Wall clock time and date at job start Tue Mar 31 2020 21:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99726 * 2 1 4 4 O 1.20819 * 120.00026 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99805 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.46961 * 299.99664 * 5 3 2 7 7 C 1.52999 * 109.47126 * 60.00117 * 5 3 2 8 8 C 1.53002 * 109.46812 * 179.97438 * 5 3 2 9 9 N 1.46894 * 109.47279 * 65.53229 * 8 5 3 10 10 C 1.48657 * 111.00231 * 79.79067 * 9 8 5 11 11 C 1.54636 * 104.63378 * 158.51657 * 10 9 8 12 12 C 1.53258 * 104.67632 * 336.31241 * 11 10 9 13 13 C 1.53603 * 111.08478 * 239.52578 * 12 11 10 14 14 C 1.54716 * 101.50912 * 262.66651 * 13 12 11 15 15 N 1.46889 * 105.51776 * 335.48822 * 14 13 12 16 16 C 1.46501 * 124.36790 * 196.86110 * 15 14 13 17 17 C 1.53000 * 109.47279 * 269.98197 * 16 15 14 18 18 C 1.50693 * 109.47091 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00461 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00066 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99945 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00470 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47105 * 59.99939 * 22 20 18 24 24 H 1.48499 * 109.47294 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47332 * 300.00354 * 22 20 18 26 26 C 1.34749 * 111.25613 * 16.82353 * 15 14 13 27 27 O 1.21285 * 125.13064 * 179.01313 * 26 15 14 28 28 C 1.48802 * 111.00216 * 195.40443 * 9 8 5 29 29 H 1.09000 * 109.47237 * 60.00004 * 1 2 3 30 30 H 1.09001 * 109.46830 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46898 * 299.99510 * 1 2 3 32 32 H 1.08999 * 109.47230 * 57.47226 * 7 5 3 33 33 H 1.08998 * 109.47127 * 177.46846 * 7 5 3 34 34 H 1.08998 * 109.47207 * 297.46629 * 7 5 3 35 35 H 1.08997 * 109.47534 * 305.52827 * 8 5 3 36 36 H 1.09003 * 109.46836 * 185.53037 * 8 5 3 37 37 H 1.09005 * 110.39977 * 39.72928 * 10 9 8 38 38 H 1.09003 * 110.40547 * 277.30782 * 10 9 8 39 39 H 1.09002 * 110.39980 * 217.51288 * 11 10 9 40 40 H 1.08998 * 110.39803 * 95.11383 * 11 10 9 41 41 H 1.08996 * 111.01967 * 20.71903 * 13 12 11 42 42 H 1.08995 * 111.01814 * 144.61341 * 13 12 11 43 43 H 1.08991 * 110.23774 * 216.47601 * 14 13 12 44 44 H 1.08997 * 110.30732 * 94.53153 * 14 13 12 45 45 H 1.09005 * 109.47284 * 29.98390 * 16 15 14 46 46 H 1.09002 * 109.46993 * 149.98016 * 16 15 14 47 47 H 1.08998 * 109.46882 * 299.99992 * 17 16 15 48 48 H 1.08998 * 109.46964 * 60.00381 * 17 16 15 49 49 H 0.97003 * 120.00328 * 179.97438 * 21 20 18 50 50 H 1.08996 * 110.45504 * 83.07754 * 28 9 8 51 51 H 1.08997 * 110.56299 * 320.56749 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7807 0.8891 7 6 4.1129 0.5817 -1.2502 8 6 4.0000 2.7422 -0.0011 9 7 3.5892 3.3747 1.2594 10 6 4.5344 3.0391 2.3567 11 6 4.3261 4.1551 3.4067 12 6 3.7563 5.3349 2.6116 13 6 4.6659 6.5675 2.7235 14 6 3.9660 7.3665 3.8485 15 7 2.5643 6.9280 3.8283 16 6 1.4619 7.6521 4.4661 17 6 1.2931 7.1597 5.9049 18 6 0.1589 7.9041 6.5607 19 1 -0.3874 8.6532 6.0067 20 6 -0.1824 7.6282 7.8678 21 7 0.4818 6.7150 8.5420 22 14 -1.5888 8.5504 8.6806 23 1 -2.8431 8.3075 7.9235 24 1 -1.7526 8.0726 10.0771 25 1 -1.2887 10.0048 8.6876 26 6 2.4231 5.7742 3.1467 27 8 1.3774 5.1804 2.9886 28 6 3.6530 4.8579 1.1575 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.6877 1.0472 -2.1393 33 1 5.1984 0.6778 -1.2736 34 1 3.8420 -0.4739 -1.2279 35 1 3.5301 3.2598 -0.8373 36 1 5.0839 2.8006 -0.1006 37 1 5.5609 3.0488 1.9902 38 1 4.2914 2.0659 2.7832 39 1 5.2770 4.4290 3.8637 40 1 3.6166 3.8323 4.1685 41 1 5.6762 6.2825 3.0170 42 1 4.6758 7.1320 1.7912 43 1 4.0295 8.4357 3.6471 44 1 4.4188 7.1374 4.8132 45 1 1.6830 8.7195 4.4709 46 1 0.5410 7.4743 3.9108 47 1 1.0721 6.0924 5.9000 48 1 2.2141 7.3376 6.4601 49 1 0.2420 6.5211 9.4617 50 1 2.7474 5.2470 0.6923 51 1 4.5329 5.1653 0.5924 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273414429.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:07 Heat of formation + Delta-G solvation = -141.552626 kcal Electronic energy + Delta-G solvation = -30649.862855 eV Core-core repulsion = 26548.073892 eV Total energy + Delta-G solvation = -4101.788963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.10888 -41.44298 -39.21291 -37.54630 -37.36987 -36.10742 -35.23862 -33.66600 -31.59155 -30.46125 -29.20222 -28.68805 -27.18976 -26.56155 -24.68301 -24.17129 -23.64688 -22.39375 -21.69418 -20.87621 -19.90142 -18.70201 -18.56918 -17.69965 -17.56961 -17.21075 -17.06454 -16.70462 -16.49010 -16.07562 -15.86995 -15.34099 -15.07143 -14.83565 -14.52350 -14.47774 -14.37420 -14.15648 -14.04553 -13.77695 -13.42961 -13.27414 -13.20307 -13.17435 -12.96032 -12.87267 -12.84622 -12.80709 -12.57554 -12.43870 -12.10601 -12.05387 -11.99753 -11.86233 -11.75874 -11.63848 -11.49732 -11.45247 -11.21673 -10.64362 -10.54211 -9.54657 -9.25019 -8.26856 -6.40461 1.35556 1.36529 1.40615 1.48117 1.64605 1.85196 2.15836 2.39367 2.94115 3.06042 3.28200 3.41906 3.59662 3.71756 3.88545 3.94942 4.11032 4.19743 4.22297 4.27500 4.28320 4.29372 4.36429 4.38810 4.51202 4.53046 4.60111 4.60610 4.65963 4.72605 4.74657 4.79928 4.82978 4.87819 4.92846 4.97255 5.02517 5.04295 5.12396 5.22753 5.29330 5.30486 5.42779 5.51130 5.58820 5.80033 5.93153 6.12573 6.18327 6.33533 6.74557 6.89661 7.28286 7.31299 8.85346 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.002725 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.618835 B =10273.649641 C =11619.012037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.453 3.547 4 O -0.524 6.524 5 C -0.072 4.072 6 H 0.118 0.882 7 C -0.135 4.135 8 C 0.060 3.940 9 N -0.536 5.536 10 C 0.039 3.961 11 C -0.102 4.102 12 C -0.095 4.095 13 C -0.102 4.102 14 C 0.092 3.908 15 N -0.625 5.625 16 C 0.143 3.857 17 C 0.027 3.973 18 C -0.548 4.548 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.933 5.933 22 Si 0.972 3.028 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.257 1.257 26 C 0.507 3.493 27 O -0.580 6.580 28 C 0.074 3.926 29 H 0.059 0.941 30 H 0.133 0.867 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.029 0.971 41 H 0.131 0.869 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.044 0.956 47 H -0.034 1.034 48 H 0.002 0.998 49 H 0.265 0.735 50 H 0.046 0.954 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.810 -10.171 -21.236 29.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.285 6.285 3 C 0.296 3.704 4 O -0.411 6.411 5 C -0.091 4.091 6 H 0.136 0.864 7 C -0.193 4.193 8 C -0.068 4.068 9 N -0.260 5.260 10 C -0.089 4.089 11 C -0.140 4.140 12 C -0.099 4.099 13 C -0.139 4.139 14 C -0.030 4.030 15 N -0.357 5.357 16 C 0.021 3.979 17 C -0.011 4.011 18 C -0.587 4.587 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.572 5.572 22 Si 0.796 3.204 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.181 1.181 26 C 0.296 3.704 27 O -0.460 6.460 28 C -0.054 4.054 29 H 0.078 0.922 30 H 0.151 0.849 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.134 0.866 40 H 0.048 0.952 41 H 0.149 0.851 42 H 0.124 0.876 43 H 0.117 0.883 44 H 0.086 0.914 45 H 0.111 0.889 46 H 0.063 0.937 47 H -0.015 1.015 48 H 0.020 0.980 49 H 0.074 0.926 50 H 0.065 0.935 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.444 -10.390 -21.020 28.639 hybrid contribution -1.268 0.568 1.004 1.714 sum 15.176 -9.822 -20.016 26.971 Atomic orbital electron populations 1.23379 0.75979 1.05210 1.01583 1.86467 1.23984 1.33695 1.84383 1.24468 0.93431 0.80823 0.71677 1.90742 1.67907 1.37446 1.44983 1.21210 0.85281 0.98742 1.03875 0.86417 1.21743 1.03098 1.00701 0.93740 1.22256 1.00220 0.92294 0.92038 1.65299 1.48457 1.06435 1.05840 1.23289 0.95827 0.98217 0.91522 1.22225 1.01283 0.93325 0.97199 1.21444 0.92573 0.98400 0.97450 1.22792 0.99147 0.92664 0.99291 1.22438 0.79033 1.01220 1.00311 1.48806 1.09963 1.24436 1.52499 1.21324 0.87726 0.95899 0.92979 1.19176 0.95934 0.93980 0.92019 1.21523 1.17107 1.21999 0.98035 0.91607 1.26059 0.99646 0.96051 0.98083 1.70116 1.42569 1.33609 1.10944 0.85399 0.78626 0.79295 0.77112 1.19687 1.20558 1.18128 1.21306 0.91160 0.80135 0.77829 1.90685 1.34581 1.59103 1.61601 1.22692 1.01302 0.88238 0.93168 0.92224 0.84895 0.93995 0.92437 0.88193 0.90702 0.91332 0.88931 0.89190 0.90783 0.86586 0.95215 0.85110 0.87632 0.88250 0.91356 0.88934 0.93721 1.01519 0.97980 0.92614 0.93525 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.87 16 2 O -0.37 -8.84 10.49 -51.45 -0.54 -9.38 16 3 C 0.45 12.10 7.12 71.24 0.51 12.61 16 4 O -0.52 -19.09 15.12 21.98 0.33 -18.76 16 5 C -0.07 -1.21 2.93 -11.54 -0.03 -1.24 16 6 H 0.12 1.74 7.58 -2.39 -0.02 1.72 16 7 C -0.14 -1.30 9.12 71.98 0.66 -0.65 16 8 C 0.06 1.04 3.82 86.30 0.33 1.37 16 9 N -0.54 -13.51 4.49 -882.07 -3.96 -17.47 16 10 C 0.04 0.76 6.11 86.52 0.53 1.29 16 11 C -0.10 -2.53 6.32 31.24 0.20 -2.33 16 12 C -0.09 -2.58 0.83 -52.66 -0.04 -2.62 16 13 C -0.10 -1.76 6.11 31.38 0.19 -1.57 16 14 C 0.09 2.35 7.37 86.89 0.64 2.99 16 15 N -0.62 -24.60 2.95 -818.13 -2.41 -27.01 16 16 C 0.14 6.64 5.88 86.38 0.51 7.15 16 17 C 0.03 1.56 5.30 29.85 0.16 1.72 16 18 C -0.55 -33.07 9.11 25.60 0.23 -32.84 16 19 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 20 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 21 N -0.93 -59.57 13.29 21.45 0.28 -59.28 16 22 Si 0.97 46.06 29.54 68.60 2.03 48.09 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 26 C 0.51 21.37 6.49 87.51 0.57 21.93 16 27 O -0.58 -31.75 17.47 -3.04 -0.05 -31.81 16 28 C 0.07 1.84 5.38 86.06 0.46 2.30 16 29 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 30 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.04 1.07 8.13 -2.39 -0.02 1.05 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 1.38 7.81 -2.39 -0.02 1.36 16 36 H 0.09 0.86 7.64 -2.39 -0.02 0.84 16 37 H 0.09 1.00 7.67 -2.38 -0.02 0.98 16 38 H 0.07 1.52 7.90 -2.39 -0.02 1.51 16 39 H 0.12 1.96 7.32 -2.39 -0.02 1.94 16 40 H 0.03 1.02 7.76 -2.39 -0.02 1.00 16 41 H 0.13 1.26 7.43 -2.39 -0.02 1.25 16 42 H 0.11 1.39 7.89 -2.39 -0.02 1.37 16 43 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.09 3.73 8.14 -2.38 -0.02 3.71 16 46 H 0.04 2.26 7.95 -2.39 -0.02 2.25 16 47 H -0.03 -2.27 8.14 -2.39 -0.02 -2.29 16 48 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 49 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 50 H 0.05 1.53 7.84 -2.39 -0.02 1.51 16 51 H 0.09 1.47 7.70 -2.39 -0.02 1.45 16 Total: -1.00 -94.07 410.63 3.14 -90.93 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.89 Total: 12.25 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 6.56 Total: 12.43 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -6.08 Total: -103.76 kcal Atomic # 8 Polarization: -59.68 SS G_CDS: -0.26 Total: -59.94 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -94.07 3.14 -90.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273414429.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.623 kcal (2) G-P(sol) polarization free energy of solvation -94.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds