Wall clock time and date at job start Tue Mar 31 2020 21:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34229 * 117.00169 * 2 1 4 4 O 1.20831 * 119.99629 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00234 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47237 * 60.00447 * 5 3 2 7 7 C 1.53003 * 109.47142 * 300.00025 * 5 3 2 8 8 C 1.53002 * 109.46987 * 179.97438 * 5 3 2 9 9 N 1.46907 * 109.47028 * 184.99954 * 8 5 3 10 10 C 1.48134 * 110.99907 * 69.87616 * 9 8 5 11 11 C 1.54076 * 107.15486 * 144.30490 * 10 9 8 12 12 C 1.54808 * 105.28444 * 358.88336 * 11 10 9 13 13 C 1.47186 * 110.99917 * 187.18046 * 9 8 5 14 14 C 1.53434 * 111.48369 * 81.72281 * 13 9 8 15 15 C 1.54743 * 101.46652 * 261.60018 * 14 13 9 16 16 N 1.46907 * 105.52429 * 335.63413 * 15 14 13 17 17 C 1.46497 * 124.37234 * 196.76504 * 16 15 14 18 18 C 1.52994 * 109.47325 * 270.02255 * 17 16 15 19 19 C 1.50704 * 109.47195 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00295 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00124 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99893 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00357 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47204 * 60.00147 * 23 21 19 25 25 H 1.48496 * 109.47698 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46968 * 300.00540 * 23 21 19 27 27 C 1.34807 * 111.24893 * 16.78750 * 16 15 14 28 28 O 1.21278 * 125.17058 * 178.85065 * 27 16 15 29 29 H 1.09004 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47619 * 299.99974 * 1 2 3 31 31 H 1.09005 * 109.47362 * 59.99840 * 1 2 3 32 32 H 1.08999 * 109.46980 * 180.02562 * 7 5 3 33 33 H 1.09000 * 109.46660 * 299.99811 * 7 5 3 34 34 H 1.08994 * 109.47247 * 60.00223 * 7 5 3 35 35 H 1.09006 * 109.47022 * 65.00398 * 8 5 3 36 36 H 1.08994 * 109.47448 * 304.99757 * 8 5 3 37 37 H 1.08998 * 109.90582 * 24.92127 * 10 9 8 38 38 H 1.09010 * 109.90312 * 263.68499 * 10 9 8 39 39 H 1.09002 * 110.29938 * 117.86656 * 11 10 9 40 40 H 1.09002 * 110.29722 * 239.90689 * 11 10 9 41 41 H 1.09003 * 110.74992 * 97.59484 * 12 11 10 42 42 H 1.08999 * 110.75268 * 220.94139 * 12 11 10 43 43 H 1.09000 * 111.03025 * 19.65261 * 14 13 9 44 44 H 1.09001 * 111.02383 * 143.55372 * 14 13 9 45 45 H 1.09006 * 110.23513 * 216.61991 * 15 14 13 46 46 H 1.08996 * 110.23808 * 94.64851 * 15 14 13 47 47 H 1.08998 * 109.47435 * 30.02800 * 17 16 15 48 48 H 1.09009 * 109.46880 * 150.02245 * 17 16 15 49 49 H 1.08994 * 109.47671 * 300.00302 * 18 17 16 50 50 H 1.08997 * 109.46807 * 60.00384 * 18 17 16 51 51 H 0.97000 * 119.99864 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8908 7 6 4.1138 0.5810 1.2483 8 6 4.0000 2.7421 -0.0011 9 7 5.4620 2.8205 -0.1224 10 6 5.9055 2.4056 -1.4735 11 6 7.1126 3.2876 -1.8463 12 6 7.3076 4.2422 -0.6433 13 6 5.9316 4.2054 0.0445 14 6 6.0436 4.5860 1.5266 15 6 4.7156 5.3483 1.7497 16 7 4.3198 5.8447 0.4249 17 6 3.3308 6.9016 0.1993 18 6 1.9404 6.2783 0.0623 19 6 0.9229 7.3656 -0.1692 20 1 1.2366 8.3980 -0.2145 21 6 -0.4085 7.0424 -0.3241 22 7 -0.7906 5.7851 -0.2694 23 14 -1.6695 8.3900 -0.6118 24 1 -1.3320 9.1263 -1.8564 25 1 -3.0191 7.7850 -0.7446 26 1 -1.6600 9.3303 0.5376 27 6 4.9839 5.2016 -0.5562 28 8 4.8373 5.3979 -1.7440 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 5.2023 0.6385 1.2481 33 1 3.7244 1.0750 2.1385 34 1 3.8048 -0.4642 1.2482 35 1 3.6869 3.2139 0.9304 36 1 3.5375 3.2574 -0.8428 37 1 5.0996 2.5570 -2.1915 38 1 6.2022 1.3567 -1.4609 39 1 8.0010 2.6722 -1.9885 40 1 6.8995 3.8576 -2.7506 41 1 8.0832 3.8680 0.0250 42 1 7.5437 5.2501 -0.9843 43 1 6.0951 3.6975 2.1559 44 1 6.9014 5.2359 1.6997 45 1 4.8701 6.1824 2.4343 46 1 3.9549 4.6735 2.1422 47 1 3.3380 7.5921 1.0427 48 1 3.5785 7.4419 -0.7146 49 1 1.9331 5.5879 -0.7810 50 1 1.6928 5.7382 0.9761 51 1 -1.7273 5.5577 -0.3781 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273414671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:30 Heat of formation + Delta-G solvation = -112.479333 kcal Electronic energy + Delta-G solvation = -32280.762256 eV Core-core repulsion = 28180.234006 eV Total energy + Delta-G solvation = -4100.528250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31759 -40.20811 -37.60639 -36.33347 -36.00629 -34.65060 -33.49282 -31.76852 -30.97207 -29.07425 -27.67842 -27.59119 -25.96056 -25.06609 -23.88875 -22.90579 -21.88487 -21.19860 -20.23844 -19.62666 -18.52433 -17.50682 -16.78731 -16.45889 -16.21164 -16.12940 -15.70443 -15.32278 -15.07182 -14.63419 -14.48621 -14.23849 -13.82864 -13.40654 -13.40161 -13.11193 -12.89490 -12.76634 -12.60785 -12.49793 -12.28262 -12.22215 -12.02134 -11.86571 -11.77673 -11.42107 -11.38414 -11.24085 -11.21237 -10.88975 -10.79796 -10.72509 -10.67046 -10.58100 -10.49697 -10.02601 -9.93787 -9.78136 -9.60910 -9.14724 -8.32382 -8.26963 -7.97708 -5.90516 -3.96254 2.49700 2.75481 2.96664 3.36537 3.40397 3.42313 3.55359 3.96028 4.37420 4.47103 4.51687 4.68968 4.76383 4.84891 4.94601 5.02113 5.11314 5.14334 5.26803 5.31254 5.32134 5.36934 5.42788 5.56532 5.59064 5.65250 5.69676 5.76373 5.78970 5.79562 5.89750 5.90951 5.93635 5.95891 6.05020 6.11615 6.16779 6.20187 6.26653 6.49024 6.60611 6.82633 6.87521 6.89176 7.03635 7.55429 7.75253 7.92754 8.02332 8.07449 8.41716 8.66273 9.10003 9.66721 11.18746 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008624 B = 0.005040 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.145497 B = 5553.859916 C = 7903.630309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.446 3.554 4 O -0.467 6.467 5 C -0.072 4.072 6 H 0.104 0.896 7 C -0.133 4.133 8 C 0.050 3.950 9 N -0.481 5.481 10 C 0.030 3.970 11 C -0.125 4.125 12 C -0.097 4.097 13 C 0.060 3.940 14 C -0.116 4.116 15 C 0.096 3.904 16 N -0.607 5.607 17 C 0.127 3.873 18 C 0.018 3.982 19 C -0.526 4.526 20 H 0.054 0.946 21 C 0.061 3.939 22 N -0.881 5.881 23 Si 0.891 3.109 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 C 0.500 3.500 28 O -0.527 6.527 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.020 0.980 50 H 0.017 0.983 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.413 -12.761 4.576 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.285 3.715 4 O -0.350 6.350 5 C -0.091 4.091 6 H 0.122 0.878 7 C -0.191 4.191 8 C -0.078 4.078 9 N -0.205 5.205 10 C -0.097 4.097 11 C -0.163 4.163 12 C -0.136 4.136 13 C -0.034 4.034 14 C -0.154 4.154 15 C -0.027 4.027 16 N -0.340 5.340 17 C 0.007 3.993 18 C -0.020 4.020 19 C -0.565 4.565 20 H 0.072 0.928 21 C -0.141 4.141 22 N -0.519 5.519 23 Si 0.718 3.282 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C 0.284 3.716 28 O -0.402 6.402 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.039 0.961 50 H 0.035 0.965 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.058 -12.723 4.330 20.183 hybrid contribution -1.720 1.291 -0.773 2.285 sum 13.338 -11.432 3.557 17.923 Atomic orbital electron populations 1.23228 0.76442 1.03027 1.03107 1.86432 1.23308 1.33758 1.84797 1.23758 0.91973 0.81768 0.73960 1.90956 1.66538 1.35483 1.42068 1.20858 0.87226 0.98415 1.02616 0.87840 1.21670 1.02604 0.99717 0.95072 1.22302 0.87115 0.94071 1.04338 1.64678 1.11516 1.16566 1.27780 1.23015 0.97530 0.99783 0.89387 1.22387 0.97644 0.97458 0.98835 1.22220 0.94240 1.00349 0.96746 1.22139 0.95715 0.88612 0.96895 1.22487 0.97385 1.01112 0.94437 1.22200 0.95958 0.98716 0.85875 1.48697 1.40860 1.38093 1.06379 1.21842 0.89221 0.87664 1.00594 1.19331 0.88558 0.96404 0.97707 1.21010 0.92064 0.93018 1.50425 0.92758 1.25005 0.98521 0.95274 0.95345 1.70033 1.16285 1.16377 1.49195 0.86691 0.80603 0.82113 0.78758 1.20253 1.21331 1.20259 1.20864 0.82078 0.82300 0.86328 1.90686 1.67624 1.66842 1.15069 0.88516 0.91777 0.91786 0.89944 0.92365 0.91951 0.89042 0.92254 0.92924 0.90013 0.91120 0.90781 0.89959 0.90723 0.88272 0.89622 0.90449 0.91112 0.91715 0.91360 0.96144 0.96512 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.55 101.05 1.07 1.52 16 2 O -0.37 -5.32 10.47 -39.25 -0.41 -5.73 16 3 C 0.45 7.50 7.26 36.00 0.26 7.76 16 4 O -0.47 -10.39 15.67 -18.75 -0.29 -10.68 16 5 C -0.07 -0.97 2.83 -91.77 -0.26 -1.22 16 6 H 0.10 1.23 7.38 -51.93 -0.38 0.85 16 7 C -0.13 -1.39 9.01 37.16 0.33 -1.06 16 8 C 0.05 0.79 2.57 -3.82 -0.01 0.78 16 9 N -0.48 -6.27 4.39 -217.93 -0.96 -7.23 16 10 C 0.03 0.38 5.54 -2.58 -0.01 0.36 16 11 C -0.13 -1.42 6.55 -25.22 -0.17 -1.59 16 12 C -0.10 -1.10 5.85 -25.32 -0.15 -1.25 16 13 C 0.06 0.81 0.64 -132.23 -0.08 0.73 16 14 C -0.12 -1.28 6.27 -25.59 -0.16 -1.44 16 15 C 0.10 1.35 6.54 -2.90 -0.02 1.33 16 16 N -0.61 -11.37 2.93 -172.55 -0.51 -11.88 16 17 C 0.13 2.81 5.88 -4.05 -0.02 2.78 16 18 C 0.02 0.49 5.30 -27.88 -0.15 0.35 16 19 C -0.53 -15.52 9.11 -34.44 -0.31 -15.83 16 20 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 22 N -0.88 -27.82 13.29 55.43 0.74 -27.09 16 23 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.50 9.40 4.81 -11.29 -0.05 9.35 16 28 O -0.53 -11.99 17.09 5.56 0.10 -11.90 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 32 H 0.08 0.76 7.75 -51.93 -0.40 0.36 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 35 H 0.09 1.58 5.73 -51.93 -0.30 1.28 16 36 H 0.06 1.24 6.72 -51.93 -0.35 0.89 16 37 H 0.05 0.78 7.56 -51.93 -0.39 0.39 16 38 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.73 8.06 -51.93 -0.42 0.32 16 42 H 0.07 0.90 8.01 -51.93 -0.42 0.48 16 43 H 0.10 0.93 8.07 -51.93 -0.42 0.51 16 44 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 1.05 6.82 -51.93 -0.35 0.70 16 47 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.07 1.59 7.95 -51.92 -0.41 1.18 16 49 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 404.57 15.07 6.10 6.10 Total: -1.00 -36.95 404.57 -8.96 -45.92 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -8.87 Total: 0.77 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 0.17 Total: 4.30 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.73 Total: -46.19 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.61 Total: -28.30 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.95 -8.96 -45.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273414671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.563 kcal (2) G-P(sol) polarization free energy of solvation -36.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds