Wall clock time and date at job start Tue Mar 31 2020 21:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34229 * 117.00169 * 2 1 4 4 O 1.20831 * 119.99629 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00234 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47237 * 60.00447 * 5 3 2 7 7 C 1.53003 * 109.47142 * 300.00025 * 5 3 2 8 8 C 1.53002 * 109.46987 * 179.97438 * 5 3 2 9 9 N 1.46907 * 109.47028 * 184.99954 * 8 5 3 10 10 C 1.48134 * 110.99907 * 69.87616 * 9 8 5 11 11 C 1.54076 * 107.15486 * 144.30490 * 10 9 8 12 12 C 1.54808 * 105.28444 * 358.88336 * 11 10 9 13 13 C 1.47186 * 110.99917 * 187.18046 * 9 8 5 14 14 C 1.53434 * 111.48369 * 81.72281 * 13 9 8 15 15 C 1.54743 * 101.46652 * 261.60018 * 14 13 9 16 16 N 1.46907 * 105.52429 * 335.63413 * 15 14 13 17 17 C 1.46497 * 124.37234 * 196.76504 * 16 15 14 18 18 C 1.52994 * 109.47325 * 270.02255 * 17 16 15 19 19 C 1.50704 * 109.47195 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00295 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00124 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99893 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00357 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47204 * 60.00147 * 23 21 19 25 25 H 1.48496 * 109.47698 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46968 * 300.00540 * 23 21 19 27 27 C 1.34807 * 111.24893 * 16.78750 * 16 15 14 28 28 O 1.21278 * 125.17058 * 178.85065 * 27 16 15 29 29 H 1.09004 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47619 * 299.99974 * 1 2 3 31 31 H 1.09005 * 109.47362 * 59.99840 * 1 2 3 32 32 H 1.08999 * 109.46980 * 180.02562 * 7 5 3 33 33 H 1.09000 * 109.46660 * 299.99811 * 7 5 3 34 34 H 1.08994 * 109.47247 * 60.00223 * 7 5 3 35 35 H 1.09006 * 109.47022 * 65.00398 * 8 5 3 36 36 H 1.08994 * 109.47448 * 304.99757 * 8 5 3 37 37 H 1.08998 * 109.90582 * 24.92127 * 10 9 8 38 38 H 1.09010 * 109.90312 * 263.68499 * 10 9 8 39 39 H 1.09002 * 110.29938 * 117.86656 * 11 10 9 40 40 H 1.09002 * 110.29722 * 239.90689 * 11 10 9 41 41 H 1.09003 * 110.74992 * 97.59484 * 12 11 10 42 42 H 1.08999 * 110.75268 * 220.94139 * 12 11 10 43 43 H 1.09000 * 111.03025 * 19.65261 * 14 13 9 44 44 H 1.09001 * 111.02383 * 143.55372 * 14 13 9 45 45 H 1.09006 * 110.23513 * 216.61991 * 15 14 13 46 46 H 1.08996 * 110.23808 * 94.64851 * 15 14 13 47 47 H 1.08998 * 109.47435 * 30.02800 * 17 16 15 48 48 H 1.09009 * 109.46880 * 150.02245 * 17 16 15 49 49 H 1.08994 * 109.47671 * 300.00302 * 18 17 16 50 50 H 1.08997 * 109.46807 * 60.00384 * 18 17 16 51 51 H 0.97000 * 119.99864 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8908 7 6 4.1138 0.5810 1.2483 8 6 4.0000 2.7421 -0.0011 9 7 5.4620 2.8205 -0.1224 10 6 5.9055 2.4056 -1.4735 11 6 7.1126 3.2876 -1.8463 12 6 7.3076 4.2422 -0.6433 13 6 5.9316 4.2054 0.0445 14 6 6.0436 4.5860 1.5266 15 6 4.7156 5.3483 1.7497 16 7 4.3198 5.8447 0.4249 17 6 3.3308 6.9016 0.1993 18 6 1.9404 6.2783 0.0623 19 6 0.9229 7.3656 -0.1692 20 1 1.2366 8.3980 -0.2145 21 6 -0.4085 7.0424 -0.3241 22 7 -0.7906 5.7851 -0.2694 23 14 -1.6695 8.3900 -0.6118 24 1 -1.3320 9.1263 -1.8564 25 1 -3.0191 7.7850 -0.7446 26 1 -1.6600 9.3303 0.5376 27 6 4.9839 5.2016 -0.5562 28 8 4.8373 5.3979 -1.7440 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 5.2023 0.6385 1.2481 33 1 3.7244 1.0750 2.1385 34 1 3.8048 -0.4642 1.2482 35 1 3.6869 3.2139 0.9304 36 1 3.5375 3.2574 -0.8428 37 1 5.0996 2.5570 -2.1915 38 1 6.2022 1.3567 -1.4609 39 1 8.0010 2.6722 -1.9885 40 1 6.8995 3.8576 -2.7506 41 1 8.0832 3.8680 0.0250 42 1 7.5437 5.2501 -0.9843 43 1 6.0951 3.6975 2.1559 44 1 6.9014 5.2359 1.6997 45 1 4.8701 6.1824 2.4343 46 1 3.9549 4.6735 2.1422 47 1 3.3380 7.5921 1.0427 48 1 3.5785 7.4419 -0.7146 49 1 1.9331 5.5879 -0.7810 50 1 1.6928 5.7382 0.9761 51 1 -1.7273 5.5577 -0.3781 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273414671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:29 Heat of formation + Delta-G solvation = -139.172047 kcal Electronic energy + Delta-G solvation = -32281.919739 eV Core-core repulsion = 28180.234006 eV Total energy + Delta-G solvation = -4101.685733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.58115 -41.59144 -38.93833 -37.69201 -37.55029 -35.94746 -35.48021 -33.52730 -32.00500 -30.83404 -28.86382 -28.72181 -27.06825 -26.99927 -25.09028 -24.27148 -23.55673 -22.29780 -21.76385 -20.86165 -19.90298 -18.85430 -18.69949 -18.00034 -17.59146 -17.32914 -17.25757 -16.74029 -16.46879 -16.34507 -15.84347 -15.48633 -15.08812 -14.87424 -14.66292 -14.53239 -14.39096 -14.20200 -14.15470 -13.84703 -13.60952 -13.48717 -13.26282 -13.14639 -12.91145 -12.88858 -12.84927 -12.68625 -12.46498 -12.38601 -12.25781 -12.06695 -11.97328 -11.87885 -11.78338 -11.72121 -11.54376 -11.46276 -11.41200 -10.94566 -10.64820 -9.65811 -9.58755 -8.24136 -6.41474 1.11537 1.31561 1.37444 1.42681 1.45333 1.62229 2.08100 2.36483 2.78924 3.05950 3.32269 3.32694 3.50210 3.66452 3.72801 3.92359 3.98192 4.07288 4.15895 4.20896 4.22315 4.23671 4.27363 4.28323 4.45137 4.53039 4.56789 4.61186 4.63558 4.69853 4.79119 4.80449 4.85251 4.97693 5.00739 5.03025 5.06567 5.11594 5.19950 5.27345 5.28752 5.31383 5.38064 5.40352 5.53052 5.66969 5.73005 5.77911 6.09230 6.23990 6.67405 6.74243 7.14577 7.28620 8.85773 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008624 B = 0.005040 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.145497 B = 5553.859916 C = 7903.630309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.447 3.553 4 O -0.536 6.536 5 C -0.066 4.066 6 H 0.125 0.875 7 C -0.122 4.122 8 C 0.066 3.934 9 N -0.452 5.452 10 C 0.025 3.975 11 C -0.124 4.124 12 C -0.091 4.091 13 C 0.056 3.944 14 C -0.097 4.097 15 C 0.085 3.915 16 N -0.617 5.617 17 C 0.141 3.859 18 C 0.038 3.962 19 C -0.551 4.551 20 H 0.068 0.932 21 C -0.001 4.001 22 N -0.925 5.925 23 Si 0.972 3.028 24 H -0.269 1.269 25 H -0.283 1.283 26 H -0.256 1.256 27 C 0.485 3.515 28 O -0.581 6.581 29 H 0.146 0.854 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.073 0.927 36 H -0.007 1.007 37 H 0.013 0.987 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.044 0.956 41 H 0.127 0.873 42 H 0.065 0.935 43 H 0.128 0.872 44 H 0.121 0.879 45 H 0.104 0.896 46 H 0.055 0.945 47 H 0.092 0.908 48 H 0.050 0.950 49 H -0.040 1.040 50 H -0.011 1.011 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.306 -13.807 6.627 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.269 6.269 3 C 0.290 3.710 4 O -0.425 6.425 5 C -0.086 4.086 6 H 0.143 0.857 7 C -0.179 4.179 8 C -0.063 4.063 9 N -0.176 5.176 10 C -0.103 4.103 11 C -0.162 4.162 12 C -0.129 4.129 13 C -0.037 4.037 14 C -0.134 4.134 15 C -0.036 4.036 16 N -0.349 5.349 17 C 0.019 3.981 18 C 0.000 4.000 19 C -0.589 4.589 20 H 0.086 0.914 21 C -0.200 4.200 22 N -0.564 5.564 23 Si 0.796 3.204 24 H -0.194 1.194 25 H -0.208 1.208 26 H -0.180 1.180 27 C 0.272 3.728 28 O -0.461 6.461 29 H 0.164 0.836 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.011 0.989 37 H 0.031 0.969 38 H 0.139 0.861 39 H 0.128 0.872 40 H 0.063 0.937 41 H 0.145 0.855 42 H 0.084 0.916 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.123 0.877 46 H 0.073 0.927 47 H 0.111 0.889 48 H 0.069 0.931 49 H -0.021 1.021 50 H 0.007 0.993 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.996 -13.805 6.423 23.573 hybrid contribution -2.704 1.543 -1.474 3.445 sum 15.292 -12.262 4.949 20.216 Atomic orbital electron populations 1.23481 0.75449 1.05695 1.01671 1.86438 1.24284 1.32250 1.83970 1.24568 0.93383 0.81315 0.71746 1.90951 1.68217 1.37788 1.45502 1.20982 0.84818 0.97165 1.05590 0.85716 1.21675 1.03797 1.00003 0.92428 1.22002 0.88642 0.95114 1.00531 1.64877 1.08790 1.15884 1.28050 1.23194 0.96860 1.02296 0.87914 1.22410 0.98421 0.97540 0.97786 1.22331 0.93299 1.00211 0.97056 1.22376 0.95546 0.86972 0.98792 1.22613 0.96297 1.02313 0.92216 1.22549 0.97494 0.99864 0.83740 1.48812 1.39834 1.37414 1.08847 1.21362 0.87132 0.88635 1.00921 1.19035 0.92299 0.94989 0.93677 1.21500 0.92972 0.93878 1.50596 0.91392 1.26123 1.01210 0.98104 0.94535 1.70236 1.16869 1.19234 1.50058 0.85405 0.77036 0.78578 0.79427 1.19380 1.20794 1.18035 1.22013 0.82527 0.82611 0.85652 1.90634 1.69434 1.68438 1.17564 0.83632 0.92913 0.93687 0.87458 0.93007 0.90107 0.90870 0.98853 0.96865 0.86139 0.87160 0.93746 0.85502 0.91583 0.85379 0.86122 0.87744 0.92668 0.88946 0.93135 1.02116 0.99297 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.55 113.37 1.20 2.00 16 2 O -0.35 -10.42 10.47 -51.41 -0.54 -10.96 16 3 C 0.45 16.04 7.26 71.24 0.52 16.55 16 4 O -0.54 -26.56 15.67 21.95 0.34 -26.22 16 5 C -0.07 -1.81 2.83 -11.54 -0.03 -1.84 16 6 H 0.13 2.88 7.38 -2.39 -0.02 2.87 16 7 C -0.12 -2.24 9.01 71.98 0.65 -1.60 16 8 C 0.07 2.23 2.57 86.30 0.22 2.45 16 9 N -0.45 -11.32 4.39 -843.39 -3.70 -15.03 16 10 C 0.02 0.59 5.54 86.43 0.48 1.07 16 11 C -0.12 -2.58 6.55 31.58 0.21 -2.37 16 12 C -0.09 -1.79 5.85 31.51 0.18 -1.61 16 13 C 0.06 1.47 0.64 2.96 0.00 1.48 16 14 C -0.10 -1.80 6.27 31.33 0.20 -1.60 16 15 C 0.09 2.35 6.54 86.90 0.57 2.92 16 16 N -0.62 -24.34 2.93 -818.19 -2.40 -26.74 16 17 C 0.14 6.67 5.88 86.38 0.51 7.18 16 18 C 0.04 2.29 5.30 29.85 0.16 2.45 16 19 C -0.55 -34.17 9.11 25.60 0.23 -33.94 16 20 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 21 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 22 N -0.93 -62.05 13.29 21.45 0.28 -61.77 16 23 Si 0.97 47.29 29.54 68.60 2.03 49.32 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 27 C 0.49 19.33 4.81 87.45 0.42 19.75 16 28 O -0.58 -29.01 17.09 -3.02 -0.05 -29.06 16 29 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 31 H 0.04 1.35 8.13 -2.38 -0.02 1.34 16 32 H 0.11 1.50 7.75 -2.39 -0.02 1.48 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.24 8.11 -2.39 -0.02 1.22 16 35 H 0.07 2.72 5.73 -2.38 -0.01 2.71 16 36 H -0.01 -0.33 6.72 -2.39 -0.02 -0.35 16 37 H 0.01 0.41 7.56 -2.39 -0.02 0.39 16 38 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.13 1.47 8.06 -2.39 -0.02 1.45 16 42 H 0.07 1.46 8.01 -2.39 -0.02 1.44 16 43 H 0.13 1.75 8.07 -2.39 -0.02 1.73 16 44 H 0.12 1.50 7.94 -2.39 -0.02 1.49 16 45 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 46 H 0.06 1.69 6.82 -2.39 -0.02 1.68 16 47 H 0.09 3.80 8.14 -2.39 -0.02 3.78 16 48 H 0.05 2.53 7.95 -2.38 -0.02 2.51 16 49 H -0.04 -2.83 8.14 -2.39 -0.02 -2.84 16 50 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 51 H 0.26 16.47 8.31 -92.71 -0.77 15.70 16 Total: -1.00 -94.08 404.57 2.83 -91.25 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.90 Total: 15.92 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 5.97 Total: 13.28 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -5.82 Total: -103.53 kcal Atomic # 8 Polarization: -65.99 SS G_CDS: -0.25 Total: -66.23 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -94.08 2.83 -91.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273414671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.925 kcal (2) G-P(sol) polarization free energy of solvation -94.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds