Wall clock time and date at job start Tue Mar 31 2020 21:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99588 * 2 1 4 4 O 1.20824 * 120.00477 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99834 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.46769 * 300.00124 * 5 3 2 7 7 C 1.53005 * 109.47239 * 59.99842 * 5 3 2 8 8 C 1.52993 * 109.47168 * 179.97438 * 5 3 2 9 9 N 1.46906 * 109.47197 * 176.04212 * 8 5 3 10 10 C 1.48053 * 110.99797 * 178.25140 * 9 8 5 11 11 C 1.54256 * 106.83234 * 146.61214 * 10 9 8 12 12 C 1.54362 * 104.82836 * 358.53896 * 11 10 9 13 13 H 1.09000 * 110.04170 * 94.67592 * 12 11 10 14 14 C 1.48932 * 110.99567 * 295.26917 * 9 8 5 15 15 H 1.08991 * 112.07693 * 78.74397 * 14 9 8 16 16 C 1.53109 * 107.98460 * 315.04452 * 14 9 8 17 17 C 1.55143 * 108.03638 * 183.83088 * 16 14 9 18 18 C 1.50308 * 109.69619 * 51.98389 * 17 16 14 19 19 O 1.21280 * 118.67568 * 159.06386 * 18 17 16 20 20 N 1.33324 * 122.64946 * 339.03705 * 18 17 16 21 21 C 1.46496 * 117.36830 * 180.29906 * 20 18 17 22 22 C 1.53002 * 109.46793 * 269.98130 * 21 20 18 23 23 C 1.50704 * 109.46894 * 179.97438 * 22 21 20 24 24 H 1.07996 * 120.00127 * 359.97438 * 23 22 21 25 25 C 1.37878 * 119.99630 * 179.97438 * 23 22 21 26 26 N 1.31510 * 120.00193 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99668 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47491 * 89.99490 * 27 25 23 29 29 H 1.48497 * 109.46829 * 209.99879 * 27 25 23 30 30 H 1.48509 * 109.46999 * 329.99730 * 27 25 23 31 31 H 1.08997 * 109.47628 * 300.00416 * 1 2 3 32 32 H 1.09005 * 109.47431 * 60.00334 * 1 2 3 33 33 H 1.09001 * 109.46988 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47094 * 180.71178 * 7 5 3 35 35 H 1.08999 * 109.46665 * 300.71071 * 7 5 3 36 36 H 1.08994 * 109.46998 * 60.70798 * 7 5 3 37 37 H 1.09005 * 109.47371 * 296.04086 * 8 5 3 38 38 H 1.08999 * 109.47352 * 56.04410 * 8 5 3 39 39 H 1.09002 * 109.98121 * 265.94781 * 10 9 8 40 40 H 1.08995 * 109.99663 * 27.26084 * 10 9 8 41 41 H 1.09006 * 110.36415 * 239.70012 * 11 10 9 42 42 H 1.09007 * 110.46531 * 117.43100 * 11 10 9 43 43 H 1.08999 * 109.51849 * 304.05145 * 16 14 9 44 44 H 1.08996 * 109.51947 * 64.22770 * 16 14 9 45 45 H 1.08999 * 109.45336 * 291.84238 * 17 16 14 46 46 H 1.08998 * 109.22744 * 171.98234 * 17 16 14 47 47 H 1.09007 * 109.46853 * 29.97430 * 21 20 18 48 48 H 1.08997 * 109.47730 * 149.97709 * 21 20 18 49 49 H 1.08997 * 109.46820 * 299.99398 * 22 21 20 50 50 H 1.08997 * 109.47327 * 59.99332 * 22 21 20 51 51 H 0.97001 * 119.99767 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9556 0.7810 0.8908 7 6 4.1139 0.5811 -1.2483 8 6 4.0000 2.7421 -0.0002 9 7 5.4638 2.8201 0.0960 10 6 5.9240 4.2267 0.0559 11 6 7.1762 4.3128 0.9527 12 6 7.3568 2.8874 1.5168 13 1 8.0563 2.3263 0.8971 14 6 5.9424 2.2813 1.3993 15 1 5.9624 1.1916 1.4096 16 6 5.0443 2.8464 2.5030 17 6 5.6006 2.3647 3.8688 18 6 7.0651 2.6895 3.9623 19 8 7.5794 2.7480 5.0591 20 7 7.8218 2.9153 2.8880 21 6 9.2379 3.2155 3.1128 22 6 9.4206 4.7267 3.2677 23 6 10.8773 5.0354 3.4996 24 1 11.6004 4.2340 3.5335 25 6 11.2868 6.3411 3.6684 26 7 10.4063 7.3171 3.6266 27 14 13.0926 6.7239 3.9551 28 1 13.7656 6.9429 2.6496 29 1 13.2130 7.9489 4.7858 30 1 13.7347 5.5841 4.6579 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 5.2029 0.6272 -1.2415 35 1 3.7943 -0.4609 -1.2545 36 1 3.7345 1.0828 -2.1385 37 1 3.6707 3.2179 -0.9240 38 1 3.5522 3.2539 0.8517 39 1 6.1780 4.5066 -0.9665 40 1 5.1447 4.8849 0.4400 41 1 7.0143 5.0238 1.7629 42 1 8.0473 4.6012 0.3642 43 1 5.0492 3.9353 2.4546 44 1 4.0268 2.4796 2.3680 45 1 5.4607 1.2874 3.9581 46 1 5.0644 2.8688 4.6728 47 1 9.5762 2.7138 4.0195 48 1 9.8233 2.8640 2.2632 49 1 9.0823 5.2283 2.3611 50 1 8.8352 5.0782 4.1173 51 1 10.6944 8.2356 3.7457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273415839.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:41 Heat of formation + Delta-G solvation = -113.855384 kcal Electronic energy + Delta-G solvation = -31144.983160 eV Core-core repulsion = 27044.395240 eV Total energy + Delta-G solvation = -4100.587920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.27452 -40.65838 -38.66860 -36.94540 -35.69155 -34.32907 -33.37185 -32.67867 -30.53150 -29.23250 -28.15459 -28.08923 -26.18072 -25.08059 -23.94480 -23.63001 -21.94303 -20.95145 -20.82327 -19.76106 -18.29009 -17.73890 -17.04232 -16.70033 -16.59233 -16.42291 -16.06663 -15.76323 -15.15662 -14.74368 -14.52494 -14.42135 -14.27183 -13.98309 -13.54707 -13.42443 -13.18565 -12.81904 -12.73331 -12.52090 -12.37000 -12.34731 -12.24456 -12.16940 -11.82530 -11.64692 -11.41310 -11.35730 -11.29046 -11.18367 -11.09465 -10.91653 -10.83884 -10.67459 -10.62302 -10.52057 -9.81603 -9.80357 -9.31679 -9.00267 -8.57924 -8.32651 -8.05032 -5.99008 -4.01141 1.85402 2.29518 3.06892 3.33076 3.37337 3.40264 3.44516 3.85758 4.22906 4.34371 4.42709 4.48329 4.59935 4.63872 4.71797 4.73640 4.79909 4.83722 4.94178 5.07760 5.14218 5.15279 5.25242 5.27376 5.37228 5.37703 5.42450 5.45223 5.58008 5.63656 5.69923 5.76830 5.80878 5.85620 5.92817 6.01643 6.06074 6.18860 6.22797 6.34311 6.57989 6.64109 6.70990 6.89660 6.95689 7.38170 7.66703 7.76927 8.02034 8.07579 8.39775 8.68208 9.05434 9.62293 11.12434 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023676 B = 0.002543 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.371347 B =11006.041065 C =11474.424917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.465 3.535 4 O -0.507 6.507 5 C -0.081 4.081 6 H 0.110 0.890 7 C -0.135 4.135 8 C 0.055 3.945 9 N -0.505 5.505 10 C 0.039 3.961 11 C -0.142 4.142 12 C 0.153 3.847 13 H 0.093 0.907 14 C 0.052 3.948 15 H 0.105 0.895 16 C -0.151 4.151 17 C -0.131 4.131 18 C 0.511 3.489 19 O -0.546 6.546 20 N -0.590 5.590 21 C 0.108 3.892 22 C 0.014 3.986 23 C -0.518 4.518 24 H 0.055 0.945 25 C 0.058 3.942 26 N -0.894 5.894 27 Si 0.893 3.107 28 H -0.281 1.281 29 H -0.287 1.287 30 H -0.273 1.273 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.021 0.979 50 H 0.019 0.981 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.988 -15.157 -11.550 26.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.308 3.692 4 O -0.394 6.394 5 C -0.100 4.100 6 H 0.128 0.872 7 C -0.193 4.193 8 C -0.073 4.073 9 N -0.229 5.229 10 C -0.089 4.089 11 C -0.181 4.181 12 C 0.047 3.953 13 H 0.111 0.889 14 C -0.057 4.057 15 H 0.123 0.877 16 C -0.190 4.190 17 C -0.172 4.172 18 C 0.299 3.701 19 O -0.424 6.424 20 N -0.321 5.321 21 C -0.013 4.013 22 C -0.024 4.024 23 C -0.557 4.557 24 H 0.074 0.926 25 C -0.143 4.143 26 N -0.533 5.533 27 Si 0.721 3.279 28 H -0.207 1.207 29 H -0.213 1.213 30 H -0.198 1.198 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.039 0.961 50 H 0.037 0.963 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.791 -14.946 -11.433 26.593 hybrid contribution 0.240 0.997 0.782 1.289 sum -18.550 -13.949 -10.651 25.537 Atomic orbital electron populations 1.23280 0.76315 1.03744 1.02601 1.86510 1.23415 1.33449 1.84013 1.23860 0.92097 0.81305 0.71959 1.90682 1.67293 1.36334 1.45098 1.21042 0.86468 0.99189 1.03300 0.87205 1.21686 1.03286 0.99673 0.94623 1.22171 0.88425 0.93538 1.03175 1.64986 1.09821 1.17265 1.30791 1.22929 0.96706 0.88189 1.01034 1.22952 0.97896 0.97503 0.99765 1.21308 0.94523 0.96354 0.83086 0.88901 1.23157 0.94116 1.00170 0.88208 0.87704 1.22639 0.99588 1.02262 0.94511 1.21944 0.93368 1.03199 0.98684 1.19911 0.88672 0.77338 0.84211 1.90741 1.73582 1.51983 1.26128 1.47188 1.11850 1.68368 1.04724 1.21953 0.77534 1.00735 1.01065 1.19410 0.96980 0.88418 0.97592 1.21110 0.92992 0.92328 1.49266 0.92630 1.24983 0.97525 0.96433 0.95354 1.69967 1.33542 0.99536 1.50282 0.86583 0.85360 0.77875 0.78114 1.20688 1.21268 1.19833 0.91855 0.91887 0.88035 0.89448 0.91874 0.92348 0.89595 0.92530 0.89735 0.93350 0.89883 0.89710 0.90467 0.90625 0.88744 0.88538 0.90692 0.91977 0.96051 0.96261 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.01 10.45 -39.26 -0.41 -3.42 16 3 C 0.47 4.42 7.26 36.01 0.26 4.68 16 4 O -0.51 -6.17 15.69 -18.75 -0.29 -6.46 16 5 C -0.08 -0.63 2.48 -91.77 -0.23 -0.86 16 6 H 0.11 0.77 6.43 -51.93 -0.33 0.44 16 7 C -0.14 -0.92 9.00 37.16 0.33 -0.58 16 8 C 0.06 0.50 2.94 -3.82 -0.01 0.49 16 9 N -0.51 -4.87 4.72 -222.32 -1.05 -5.92 16 10 C 0.04 0.43 5.98 -2.53 -0.02 0.41 16 11 C -0.14 -1.98 4.63 -25.36 -0.12 -2.10 16 12 C 0.15 2.06 3.14 -67.42 -0.21 1.85 16 13 H 0.09 1.19 8.00 -51.93 -0.42 0.77 16 14 C 0.05 0.54 2.52 -65.83 -0.17 0.37 16 15 H 0.11 0.94 7.50 -51.93 -0.39 0.55 16 16 C -0.15 -1.63 4.12 -25.54 -0.11 -1.74 16 17 C -0.13 -1.66 6.11 -26.94 -0.16 -1.83 16 18 C 0.51 9.20 7.48 -11.82 -0.09 9.12 16 19 O -0.55 -12.51 16.20 5.56 0.09 -12.42 16 20 N -0.59 -10.22 2.50 -166.30 -0.42 -10.63 16 21 C 0.11 2.28 5.06 -4.04 -0.02 2.25 16 22 C 0.01 0.36 5.04 -27.88 -0.14 0.22 16 23 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 24 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 25 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 26 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 27 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.61 7.74 -51.93 -0.40 0.21 16 35 H 0.06 0.39 8.10 -51.93 -0.42 -0.04 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.57 5.73 -51.93 -0.30 0.27 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.53 7.46 -51.93 -0.39 0.14 16 41 H 0.08 1.40 7.51 -51.93 -0.39 1.01 16 42 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 43 H 0.08 0.95 6.65 -51.93 -0.35 0.61 16 44 H 0.08 0.69 5.86 -51.93 -0.30 0.39 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.07 1.72 7.14 -51.92 -0.37 1.35 16 48 H 0.06 1.19 7.90 -51.93 -0.41 0.78 16 49 H 0.02 0.56 6.33 -51.93 -0.33 0.23 16 50 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 51 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 394.37 15.07 5.94 5.94 Total: -1.00 -34.47 394.37 -9.00 -43.47 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.56 Total: -1.24 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.02 Total: 0.12 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -0.73 Total: -42.84 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.61 Total: -22.31 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.47 -9.00 -43.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273415839.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.381 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds