Wall clock time and date at job start Tue Mar 31 2020 21:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34219 * 117.00165 * 2 1 4 4 O 1.20830 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00105 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47445 * 60.00024 * 5 3 2 7 7 C 1.52996 * 109.47078 * 299.99628 * 5 3 2 8 8 C 1.53004 * 109.47160 * 180.02562 * 5 3 2 9 9 N 1.46900 * 109.47050 * 184.06019 * 8 5 3 10 10 C 1.47660 * 111.00351 * 56.36577 * 9 8 5 11 11 C 1.54521 * 107.05863 * 123.12504 * 10 9 8 12 12 C 1.54438 * 102.63106 * 22.93169 * 11 10 9 13 13 H 1.08997 * 110.81514 * 80.38953 * 12 11 10 14 14 C 1.48275 * 111.00196 * 176.93253 * 9 8 5 15 15 H 1.09001 * 111.35296 * 91.92143 * 14 9 8 16 16 C 1.53118 * 108.11180 * 329.40968 * 14 9 8 17 17 C 1.52889 * 109.33494 * 182.69984 * 16 14 9 18 18 C 1.50350 * 109.30379 * 52.84875 * 17 16 14 19 19 O 1.21280 * 118.79698 * 158.34103 * 18 17 16 20 20 N 1.33350 * 122.40161 * 338.32190 * 18 17 16 21 21 C 1.46500 * 117.28770 * 179.78304 * 20 18 17 22 22 C 1.52993 * 109.47139 * 90.00007 * 21 20 18 23 23 C 1.50708 * 109.46951 * 179.97438 * 22 21 20 24 24 H 1.07996 * 120.00061 * 359.97438 * 23 22 21 25 25 C 1.37878 * 120.00023 * 179.97438 * 23 22 21 26 26 N 1.31516 * 119.99689 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00187 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46775 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.46897 * 119.99871 * 27 25 23 30 30 H 1.48493 * 109.47405 * 240.00597 * 27 25 23 31 31 H 1.09002 * 109.46731 * 60.00272 * 1 2 3 32 32 H 1.09000 * 109.46965 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46970 * 300.00703 * 1 2 3 34 34 H 1.08999 * 109.47224 * 60.00332 * 7 5 3 35 35 H 1.09003 * 109.47564 * 179.97438 * 7 5 3 36 36 H 1.08997 * 109.47449 * 299.99962 * 7 5 3 37 37 H 1.08998 * 109.47632 * 64.05407 * 8 5 3 38 38 H 1.09007 * 109.47122 * 304.05258 * 8 5 3 39 39 H 1.09003 * 109.91423 * 242.47983 * 10 9 8 40 40 H 1.08998 * 109.91627 * 3.57319 * 10 9 8 41 41 H 1.08996 * 110.78793 * 141.26907 * 11 10 9 42 42 H 1.08997 * 110.78315 * 264.53453 * 11 10 9 43 43 H 1.09002 * 109.49477 * 62.74617 * 16 14 9 44 44 H 1.08999 * 109.49653 * 302.66255 * 16 14 9 45 45 H 1.09004 * 109.49713 * 292.90280 * 17 16 14 46 46 H 1.09002 * 109.52822 * 172.81499 * 17 16 14 47 47 H 1.09000 * 109.47108 * 329.99324 * 21 20 18 48 48 H 1.09005 * 109.46446 * 209.99966 * 21 20 18 49 49 H 1.08996 * 109.47338 * 299.99282 * 22 21 20 50 50 H 1.09001 * 109.47391 * 60.00128 * 22 21 20 51 51 H 0.97003 * 119.99511 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9565 0.7805 -0.8891 7 6 4.1129 0.5815 1.2502 8 6 4.0002 2.7420 0.0011 9 7 5.4639 2.8198 -0.0964 10 6 5.9530 2.1089 -1.2946 11 6 6.7628 3.1280 -2.1273 12 6 7.1701 4.1791 -1.0716 13 1 8.0326 3.8386 -0.4987 14 6 5.9172 4.2295 -0.1726 15 1 6.1364 4.6300 0.8172 16 6 4.8247 5.0437 -0.8714 17 6 5.2925 6.4911 -1.0254 18 6 6.6381 6.5100 -1.6958 19 8 6.9965 7.5230 -2.2580 20 7 7.4519 5.4536 -1.6945 21 6 8.7356 5.5939 -2.3864 22 6 9.7895 6.1120 -1.4058 23 6 11.1102 6.2557 -2.1175 24 1 11.1899 6.0024 -3.1643 25 6 12.2168 6.7105 -1.4322 26 7 12.1196 7.0194 -0.1575 27 14 13.8539 6.8879 -2.3141 28 1 13.6985 6.4790 -3.7332 29 1 14.2980 8.3037 -2.2532 30 1 14.8663 6.0227 -1.6572 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 3.8039 -0.4638 1.2503 35 1 5.2014 0.6381 1.2505 36 1 3.7228 1.0758 2.1399 37 1 3.6717 3.2177 0.9251 38 1 3.5517 3.2538 -0.8504 39 1 6.5942 1.2788 -0.9978 40 1 5.1094 1.7368 -1.8758 41 1 7.6431 2.6574 -2.5650 42 1 6.1403 3.5763 -2.9016 43 1 3.9133 5.0176 -0.2741 44 1 4.6274 4.6185 -1.8555 45 1 5.3693 6.9551 -0.0420 46 1 4.5754 7.0430 -1.6331 47 1 8.6288 6.2987 -3.2110 48 1 9.0465 4.6242 -2.7752 49 1 9.4787 7.0816 -1.0171 50 1 9.8964 5.4071 -0.5813 51 1 12.8982 7.3391 0.3247 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273415840.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:44 Heat of formation + Delta-G solvation = -112.438691 kcal Electronic energy + Delta-G solvation = -30775.430092 eV Core-core repulsion = 26674.903604 eV Total energy + Delta-G solvation = -4100.526488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31478 -40.71929 -38.72805 -36.97516 -35.71631 -34.50683 -33.28289 -32.83959 -30.75391 -29.11347 -28.32604 -27.97242 -26.28620 -25.07628 -23.96242 -23.62939 -21.80826 -21.63303 -20.66828 -19.49972 -18.06400 -17.99804 -17.21719 -16.83588 -16.74281 -16.40390 -16.05721 -15.60273 -15.25140 -14.76906 -14.60589 -14.40268 -14.08963 -13.88580 -13.75569 -13.42102 -13.37413 -12.96275 -12.81002 -12.69908 -12.53047 -12.33395 -12.24591 -12.10574 -11.93783 -11.71401 -11.37178 -11.33012 -11.23464 -11.20841 -11.15483 -10.92622 -10.86879 -10.79548 -10.62810 -10.56610 -9.84708 -9.82631 -9.30984 -8.99347 -8.53697 -8.33275 -8.03958 -5.98501 -4.01079 1.82269 2.25570 3.10140 3.32763 3.33399 3.40629 3.44885 3.83069 4.17850 4.30880 4.42905 4.48479 4.52072 4.63833 4.68620 4.70243 4.75958 4.77579 4.88514 5.00125 5.08322 5.11997 5.19394 5.22894 5.33614 5.37793 5.42523 5.44352 5.55493 5.62160 5.67332 5.72021 5.78223 5.80854 5.88089 5.91138 6.00549 6.07583 6.14679 6.22434 6.57873 6.61172 6.71630 6.88238 6.92785 7.35051 7.65748 7.77162 8.02425 8.07475 8.39505 8.68727 9.05714 9.62482 11.13024 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022686 B = 0.002383 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.935725 B =11749.155607 C =12393.066585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.506 6.506 5 C -0.085 4.085 6 H 0.111 0.889 7 C -0.136 4.136 8 C 0.060 3.940 9 N -0.516 5.516 10 C 0.036 3.964 11 C -0.155 4.155 12 C 0.146 3.854 13 H 0.102 0.898 14 C 0.069 3.931 15 H 0.109 0.891 16 C -0.148 4.148 17 C -0.133 4.133 18 C 0.511 3.489 19 O -0.546 6.546 20 N -0.589 5.589 21 C 0.109 3.891 22 C 0.015 3.985 23 C -0.518 4.518 24 H 0.056 0.944 25 C 0.058 3.942 26 N -0.893 5.893 27 Si 0.894 3.106 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.284 1.284 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.075 0.925 48 H 0.061 0.939 49 H 0.021 0.979 50 H 0.015 0.985 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.739 -17.196 2.013 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.308 3.692 4 O -0.394 6.394 5 C -0.104 4.104 6 H 0.129 0.871 7 C -0.193 4.193 8 C -0.069 4.069 9 N -0.239 5.239 10 C -0.091 4.091 11 C -0.195 4.195 12 C 0.040 3.960 13 H 0.120 0.880 14 C -0.039 4.039 15 H 0.126 0.874 16 C -0.187 4.187 17 C -0.174 4.174 18 C 0.298 3.702 19 O -0.424 6.424 20 N -0.320 5.320 21 C -0.012 4.012 22 C -0.023 4.023 23 C -0.557 4.557 24 H 0.075 0.925 25 C -0.144 4.144 26 N -0.532 5.532 27 Si 0.721 3.279 28 H -0.197 1.197 29 H -0.210 1.210 30 H -0.210 1.210 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.040 0.960 50 H 0.033 0.967 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.517 -16.559 2.330 28.047 hybrid contribution 0.304 0.486 -1.071 1.215 sum -22.212 -16.073 1.259 27.447 Atomic orbital electron populations 1.23282 0.76284 1.03748 1.02615 1.86507 1.23439 1.33464 1.84020 1.23830 0.92063 0.81311 0.71983 1.90684 1.67281 1.36324 1.45079 1.21163 0.86599 0.99297 1.03362 0.87103 1.21696 1.03303 0.99680 0.94659 1.22219 0.88291 0.93174 1.03173 1.63903 1.09670 1.11666 1.38697 1.22991 0.98660 0.97478 0.90009 1.23174 1.00956 0.96943 0.98388 1.21461 0.97850 0.83750 0.92983 0.88004 1.22887 0.93673 0.87593 0.99772 0.87360 1.22279 0.99484 0.95326 1.01589 1.21606 0.95116 0.97714 1.02930 1.19982 0.86249 0.83141 0.80816 1.90736 1.75700 1.30827 1.45121 1.47085 1.19490 1.11409 1.54026 1.21928 0.81446 1.00801 0.97002 1.19339 0.91997 0.96780 0.94140 1.21130 0.93961 1.44112 0.96486 0.92547 1.25002 0.99110 0.95384 0.94880 1.69987 1.29976 1.44914 1.08337 0.86512 0.83771 0.77739 0.79830 1.19711 1.21011 1.21037 0.91893 0.88030 0.91828 0.91891 0.89438 0.92259 0.89451 0.92647 0.89558 0.92431 0.89766 0.91072 0.90050 0.91287 0.88388 0.88553 0.90679 0.92022 0.96015 0.96678 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.90 10.47 -39.23 -0.41 -3.31 16 3 C 0.47 4.26 7.25 36.00 0.26 4.53 16 4 O -0.51 -5.98 15.69 -18.75 -0.29 -6.27 16 5 C -0.08 -0.63 2.59 -91.77 -0.24 -0.87 16 6 H 0.11 0.71 6.16 -51.93 -0.32 0.39 16 7 C -0.14 -0.90 9.00 37.16 0.33 -0.57 16 8 C 0.06 0.51 2.41 -3.82 -0.01 0.50 16 9 N -0.52 -4.79 4.67 -223.03 -1.04 -5.83 16 10 C 0.04 0.31 6.06 -2.61 -0.02 0.30 16 11 C -0.16 -1.70 5.80 -25.18 -0.15 -1.85 16 12 C 0.15 1.99 3.12 -67.50 -0.21 1.78 16 13 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.07 0.77 3.54 -66.22 -0.23 0.54 16 15 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 16 C -0.15 -1.59 3.76 -26.73 -0.10 -1.69 16 17 C -0.13 -1.75 6.08 -28.11 -0.17 -1.92 16 18 C 0.51 9.40 7.47 -11.79 -0.09 9.31 16 19 O -0.55 -12.69 16.21 5.56 0.09 -12.60 16 20 N -0.59 -10.39 2.49 -166.38 -0.41 -10.80 16 21 C 0.11 2.32 5.02 -4.05 -0.02 2.30 16 22 C 0.02 0.40 5.28 -27.88 -0.15 0.26 16 23 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 24 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 25 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 26 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 27 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 28 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 30 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 34 H 0.06 0.37 8.11 -51.93 -0.42 -0.05 16 35 H 0.09 0.60 7.72 -51.93 -0.40 0.20 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.80 8.00 -51.93 -0.42 0.39 16 38 H 0.06 0.52 5.81 -51.93 -0.30 0.22 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.43 6.11 -51.93 -0.32 0.11 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.82 7.39 -51.93 -0.38 0.43 16 43 H 0.08 0.77 6.57 -51.93 -0.34 0.43 16 44 H 0.07 0.75 6.49 -51.93 -0.34 0.42 16 45 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.07 1.74 7.14 -51.93 -0.37 1.37 16 48 H 0.06 1.19 7.79 -51.93 -0.40 0.79 16 49 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 397.22 15.07 5.99 5.99 Total: -1.00 -34.99 397.22 -9.13 -44.12 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -8.63 Total: -2.00 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -0.13 Total: 0.30 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -0.72 Total: -43.14 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.61 Total: -22.18 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.99 -9.13 -44.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273415840.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.323 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds