Wall clock time and date at job start Tue Mar 31 2020 21:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34219 * 117.00165 * 2 1 4 4 O 1.20830 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00105 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47445 * 60.00024 * 5 3 2 7 7 C 1.52996 * 109.47078 * 299.99628 * 5 3 2 8 8 C 1.53004 * 109.47160 * 180.02562 * 5 3 2 9 9 N 1.46900 * 109.47050 * 184.06019 * 8 5 3 10 10 C 1.47660 * 111.00351 * 56.36577 * 9 8 5 11 11 C 1.54521 * 107.05863 * 123.12504 * 10 9 8 12 12 C 1.54438 * 102.63106 * 22.93169 * 11 10 9 13 13 H 1.08997 * 110.81514 * 80.38953 * 12 11 10 14 14 C 1.48275 * 111.00196 * 176.93253 * 9 8 5 15 15 H 1.09001 * 111.35296 * 91.92143 * 14 9 8 16 16 C 1.53118 * 108.11180 * 329.40968 * 14 9 8 17 17 C 1.52889 * 109.33494 * 182.69984 * 16 14 9 18 18 C 1.50350 * 109.30379 * 52.84875 * 17 16 14 19 19 O 1.21280 * 118.79698 * 158.34103 * 18 17 16 20 20 N 1.33350 * 122.40161 * 338.32190 * 18 17 16 21 21 C 1.46500 * 117.28770 * 179.78304 * 20 18 17 22 22 C 1.52993 * 109.47139 * 90.00007 * 21 20 18 23 23 C 1.50708 * 109.46951 * 179.97438 * 22 21 20 24 24 H 1.07996 * 120.00061 * 359.97438 * 23 22 21 25 25 C 1.37878 * 120.00023 * 179.97438 * 23 22 21 26 26 N 1.31516 * 119.99689 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00187 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46775 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.46897 * 119.99871 * 27 25 23 30 30 H 1.48493 * 109.47405 * 240.00597 * 27 25 23 31 31 H 1.09002 * 109.46731 * 60.00272 * 1 2 3 32 32 H 1.09000 * 109.46965 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46970 * 300.00703 * 1 2 3 34 34 H 1.08999 * 109.47224 * 60.00332 * 7 5 3 35 35 H 1.09003 * 109.47564 * 179.97438 * 7 5 3 36 36 H 1.08997 * 109.47449 * 299.99962 * 7 5 3 37 37 H 1.08998 * 109.47632 * 64.05407 * 8 5 3 38 38 H 1.09007 * 109.47122 * 304.05258 * 8 5 3 39 39 H 1.09003 * 109.91423 * 242.47983 * 10 9 8 40 40 H 1.08998 * 109.91627 * 3.57319 * 10 9 8 41 41 H 1.08996 * 110.78793 * 141.26907 * 11 10 9 42 42 H 1.08997 * 110.78315 * 264.53453 * 11 10 9 43 43 H 1.09002 * 109.49477 * 62.74617 * 16 14 9 44 44 H 1.08999 * 109.49653 * 302.66255 * 16 14 9 45 45 H 1.09004 * 109.49713 * 292.90280 * 17 16 14 46 46 H 1.09002 * 109.52822 * 172.81499 * 17 16 14 47 47 H 1.09000 * 109.47108 * 329.99324 * 21 20 18 48 48 H 1.09005 * 109.46446 * 209.99966 * 21 20 18 49 49 H 1.08996 * 109.47338 * 299.99282 * 22 21 20 50 50 H 1.09001 * 109.47391 * 60.00128 * 22 21 20 51 51 H 0.97003 * 119.99511 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9565 0.7805 -0.8891 7 6 4.1129 0.5815 1.2502 8 6 4.0002 2.7420 0.0011 9 7 5.4639 2.8198 -0.0964 10 6 5.9530 2.1089 -1.2946 11 6 6.7628 3.1280 -2.1273 12 6 7.1701 4.1791 -1.0716 13 1 8.0326 3.8386 -0.4987 14 6 5.9172 4.2295 -0.1726 15 1 6.1364 4.6300 0.8172 16 6 4.8247 5.0437 -0.8714 17 6 5.2925 6.4911 -1.0254 18 6 6.6381 6.5100 -1.6958 19 8 6.9965 7.5230 -2.2580 20 7 7.4519 5.4536 -1.6945 21 6 8.7356 5.5939 -2.3864 22 6 9.7895 6.1120 -1.4058 23 6 11.1102 6.2557 -2.1175 24 1 11.1899 6.0024 -3.1643 25 6 12.2168 6.7105 -1.4322 26 7 12.1196 7.0194 -0.1575 27 14 13.8539 6.8879 -2.3141 28 1 13.6985 6.4790 -3.7332 29 1 14.2980 8.3037 -2.2532 30 1 14.8663 6.0227 -1.6572 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 3.8039 -0.4638 1.2503 35 1 5.2014 0.6381 1.2505 36 1 3.7228 1.0758 2.1399 37 1 3.6717 3.2177 0.9251 38 1 3.5517 3.2538 -0.8504 39 1 6.5942 1.2788 -0.9978 40 1 5.1094 1.7368 -1.8758 41 1 7.6431 2.6574 -2.5650 42 1 6.1403 3.5763 -2.9016 43 1 3.9133 5.0176 -0.2741 44 1 4.6274 4.6185 -1.8555 45 1 5.3693 6.9551 -0.0420 46 1 4.5754 7.0430 -1.6331 47 1 8.6288 6.2987 -3.2110 48 1 9.0465 4.6242 -2.7752 49 1 9.4787 7.0816 -1.0171 50 1 9.8964 5.4071 -0.5813 51 1 12.8982 7.3391 0.3247 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273415840.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:43 Heat of formation + Delta-G solvation = -135.327027 kcal Electronic energy + Delta-G solvation = -30776.422604 eV Core-core repulsion = 26674.903604 eV Total energy + Delta-G solvation = -4101.519000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.30766 -41.54782 -39.92942 -37.69204 -36.99989 -35.81732 -34.70427 -34.25833 -32.08339 -30.63473 -29.22974 -28.56914 -27.05650 -26.85262 -24.93768 -24.62587 -23.28719 -22.76593 -21.81720 -20.27697 -19.26365 -18.75901 -18.59654 -17.92843 -17.75694 -17.52847 -17.31151 -16.71855 -16.55017 -16.23361 -15.70345 -15.58643 -15.05955 -14.90833 -14.70662 -14.47055 -14.44222 -14.22193 -14.05608 -13.69841 -13.59632 -13.48447 -13.28235 -12.95133 -12.90219 -12.82209 -12.78708 -12.70650 -12.57090 -12.32419 -12.12206 -11.94141 -11.89224 -11.81591 -11.80260 -11.68717 -11.56477 -11.38101 -11.32011 -10.60052 -10.58586 -9.61477 -9.29547 -8.22836 -6.34963 1.15489 1.38403 1.40266 1.53182 1.64154 1.66959 2.05829 2.40937 2.94037 3.10554 3.36311 3.45091 3.62519 3.67633 3.79270 3.86881 4.01480 4.09733 4.16450 4.23682 4.29185 4.30404 4.33727 4.34451 4.43172 4.45233 4.64579 4.67266 4.72940 4.77035 4.78263 4.79935 4.83708 4.87175 4.94395 4.97769 5.05227 5.09052 5.17542 5.24632 5.33029 5.35494 5.47425 5.48615 5.58483 5.80757 5.81671 6.00678 6.17314 6.60319 6.70425 6.80394 7.21728 7.34299 8.89573 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022686 B = 0.002383 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.935725 B =11749.155607 C =12393.066585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.538 6.538 5 C -0.079 4.079 6 H 0.128 0.872 7 C -0.131 4.131 8 C 0.062 3.938 9 N -0.511 5.511 10 C 0.041 3.959 11 C -0.148 4.148 12 C 0.133 3.867 13 H 0.086 0.914 14 C 0.074 3.926 15 H 0.104 0.896 16 C -0.136 4.136 17 C -0.123 4.123 18 C 0.499 3.501 19 O -0.605 6.605 20 N -0.586 5.586 21 C 0.126 3.874 22 C 0.029 3.971 23 C -0.542 4.542 24 H 0.064 0.936 25 C -0.001 4.001 26 N -0.932 5.932 27 Si 0.970 3.030 28 H -0.260 1.260 29 H -0.282 1.282 30 H -0.272 1.272 31 H 0.060 0.940 32 H 0.130 0.870 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.053 0.947 48 H 0.085 0.915 49 H -0.027 1.027 50 H -0.001 1.001 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.606 -19.711 1.519 30.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.428 6.428 5 C -0.099 4.099 6 H 0.146 0.854 7 C -0.188 4.188 8 C -0.066 4.066 9 N -0.234 5.234 10 C -0.086 4.086 11 C -0.187 4.187 12 C 0.028 3.972 13 H 0.104 0.896 14 C -0.034 4.034 15 H 0.122 0.878 16 C -0.174 4.174 17 C -0.163 4.163 18 C 0.289 3.711 19 O -0.487 6.487 20 N -0.315 5.315 21 C 0.003 3.997 22 C -0.009 4.009 23 C -0.580 4.580 24 H 0.082 0.918 25 C -0.199 4.199 26 N -0.572 5.572 27 Si 0.794 3.206 28 H -0.183 1.183 29 H -0.208 1.208 30 H -0.198 1.198 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.091 0.909 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.071 0.929 48 H 0.103 0.897 49 H -0.008 1.008 50 H 0.017 0.983 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.414 -19.144 1.851 30.301 hybrid contribution 0.534 1.242 -0.867 1.606 sum -22.880 -17.902 0.984 29.068 Atomic orbital electron populations 1.23532 0.75002 1.05636 1.02406 1.86499 1.24755 1.32848 1.83577 1.24113 0.92604 0.81125 0.71024 1.90673 1.68064 1.37318 1.46703 1.21152 0.85638 0.98574 1.04492 0.85398 1.21661 1.03134 1.00077 0.93965 1.22190 0.87472 0.94161 1.02808 1.63925 1.10261 1.10110 1.39124 1.23053 0.99236 0.96849 0.89467 1.23116 1.01403 0.96437 0.97783 1.21710 0.98661 0.82415 0.94394 0.89619 1.22772 0.92579 0.89124 0.98951 0.87781 1.22235 0.99862 0.93201 1.02143 1.21606 0.91872 0.99989 1.02855 1.21008 0.87918 0.82126 0.80030 1.90701 1.77286 1.32946 1.47763 1.47106 1.17892 1.12997 1.53522 1.21454 0.82106 1.00949 0.95179 1.19125 0.93280 0.93946 0.94572 1.21567 0.95045 1.44357 0.97037 0.91812 1.26022 1.03505 0.94713 0.95668 1.70125 1.31404 1.45586 1.10098 0.85325 0.78433 0.77761 0.79068 1.18348 1.20820 1.19753 0.92118 0.85158 0.92082 0.90949 0.89416 0.92829 0.89915 0.92979 0.88154 0.90350 0.89587 0.91244 0.87882 0.90885 0.87317 0.87275 0.92873 0.89687 1.00825 0.98255 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.36 -5.04 10.47 -51.31 -0.54 -5.58 16 3 C 0.47 7.59 7.25 71.23 0.52 8.10 16 4 O -0.54 -11.90 15.69 21.95 0.34 -11.55 16 5 C -0.08 -0.96 2.59 -11.54 -0.03 -0.99 16 6 H 0.13 1.14 6.16 -2.39 -0.01 1.12 16 7 C -0.13 -1.40 9.00 71.98 0.65 -0.75 16 8 C 0.06 0.91 2.41 86.30 0.21 1.12 16 9 N -0.51 -8.27 4.67 -859.55 -4.01 -12.28 16 10 C 0.04 0.59 6.06 86.67 0.53 1.11 16 11 C -0.15 -2.98 5.80 31.60 0.18 -2.80 16 12 C 0.13 3.58 3.12 46.26 0.14 3.72 16 13 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 14 C 0.07 1.57 3.54 45.13 0.16 1.73 16 15 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 16 C -0.14 -2.65 3.76 30.60 0.12 -2.54 16 17 C -0.12 -3.16 6.08 29.70 0.18 -2.97 16 18 C 0.50 18.95 7.47 87.77 0.66 19.60 16 19 O -0.60 -29.62 16.21 -3.03 -0.05 -29.67 16 20 N -0.59 -21.22 2.49 -799.50 -1.99 -23.21 16 21 C 0.13 5.56 5.02 86.38 0.43 5.99 16 22 C 0.03 1.60 5.28 29.85 0.16 1.76 16 23 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 24 H 0.06 3.57 7.74 -2.91 -0.02 3.54 16 25 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 26 N -0.93 -58.39 13.29 21.45 0.28 -58.11 16 27 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 28 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 29 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 30 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 31 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 32 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 34 H 0.07 0.65 8.11 -2.39 -0.02 0.63 16 35 H 0.09 0.97 7.72 -2.39 -0.02 0.95 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 1.33 8.00 -2.39 -0.02 1.32 16 38 H 0.05 0.83 5.81 -2.38 -0.01 0.82 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 0.84 6.11 -2.39 -0.01 0.83 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 1.45 7.39 -2.39 -0.02 1.44 16 43 H 0.10 1.66 6.57 -2.39 -0.02 1.65 16 44 H 0.07 1.41 6.49 -2.39 -0.02 1.40 16 45 H 0.11 2.59 8.14 -2.38 -0.02 2.58 16 46 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.05 2.58 7.14 -2.39 -0.02 2.56 16 48 H 0.08 3.32 7.79 -2.38 -0.02 3.30 16 49 H -0.03 -1.72 8.14 -2.39 -0.02 -1.74 16 50 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 51 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -79.60 397.22 2.77 -76.83 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.91 Total: 12.90 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.79 Total: 3.30 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -5.72 Total: -93.60 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -0.24 Total: -46.80 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -79.60 2.77 -76.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273415840.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.493 kcal (2) G-P(sol) polarization free energy of solvation -79.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds