Wall clock time and date at job start Tue Mar 31 2020 21:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20766 * 120.00297 * 2 1 4 4 C 1.50699 * 120.00243 * 180.02562 * 2 1 3 5 5 H 1.08997 * 109.47482 * 44.99668 * 4 2 1 6 6 C 1.53007 * 109.46946 * 284.99846 * 4 2 1 7 7 N 1.46900 * 109.47306 * 165.00019 * 4 2 1 8 8 C 1.48480 * 111.00037 * 66.04741 * 7 4 2 9 9 C 1.54183 * 111.98687 * 192.47549 * 8 7 4 10 10 O 1.39996 * 113.28621 * 318.68265 * 9 8 7 11 11 C 1.44600 * 112.92949 * 94.36475 * 10 9 8 12 12 C 1.46301 * 111.21893 * 280.80570 * 11 10 9 13 13 C 1.54661 * 112.37380 * 297.02437 * 12 11 10 14 14 C 1.51260 * 104.22695 * 214.59563 * 13 12 11 15 15 O 1.21286 * 124.93511 * 196.08154 * 14 13 12 16 16 N 1.34410 * 110.12472 * 16.08516 * 14 13 12 17 17 C 1.46496 * 124.34433 * 180.45471 * 16 14 13 18 18 C 1.53006 * 109.46995 * 90.02365 * 17 16 14 19 19 C 1.50698 * 109.47184 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99819 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00046 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00310 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00304 * 23 21 19 27 27 C 1.46771 * 111.31354 * 0.72272 * 16 14 13 28 28 C 1.44083 * 111.00066 * 297.91377 * 7 4 2 29 29 H 1.09000 * 109.47363 * 240.00422 * 1 2 3 30 30 H 1.09009 * 109.47130 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47317 * 119.99972 * 1 2 3 32 32 H 1.09000 * 109.47248 * 179.97438 * 6 4 2 33 33 H 1.08997 * 109.46884 * 300.00188 * 6 4 2 34 34 H 1.08999 * 109.46759 * 60.00151 * 6 4 2 35 35 H 1.08991 * 108.98144 * 71.82617 * 8 7 4 36 36 H 1.08997 * 108.90793 * 313.07015 * 8 7 4 37 37 H 1.08995 * 108.71824 * 197.70222 * 9 8 7 38 38 H 1.08999 * 108.62415 * 79.59036 * 9 8 7 39 39 H 1.09005 * 109.12967 * 160.36257 * 11 10 9 40 40 H 1.09005 * 109.08447 * 41.22432 * 11 10 9 41 41 H 1.09005 * 110.47951 * 95.91226 * 13 12 11 42 42 H 1.09002 * 110.59350 * 333.33886 * 13 12 11 43 43 H 1.09001 * 109.47001 * 330.02664 * 17 16 14 44 44 H 1.09001 * 109.47464 * 210.02104 * 17 16 14 45 45 H 1.08998 * 109.46509 * 60.00302 * 18 17 16 46 46 H 1.08993 * 109.46955 * 299.99862 * 18 17 16 47 47 H 0.97001 * 119.99934 * 359.97438 * 22 21 19 48 48 H 1.08997 * 110.23848 * 101.80483 * 27 16 14 49 49 H 1.09001 * 110.23888 * 223.79351 * 27 16 14 50 50 H 1.08998 * 109.72973 * 99.86234 * 28 7 4 51 51 H 1.08997 * 109.72990 * 339.17938 * 28 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.8129 -1.9828 -0.7275 6 6 2.1922 -1.9340 1.3926 7 7 3.6639 -1.0600 -0.3589 8 6 4.3478 -0.2578 0.6867 9 6 5.7129 0.2737 0.2057 10 8 6.4449 -0.6663 -0.5294 11 6 6.2500 -0.5409 -1.9567 12 6 4.9886 -1.1530 -2.3746 13 6 4.9557 -2.6758 -2.1060 14 6 4.1516 -3.2390 -3.2567 15 8 3.6590 -4.3470 -3.2832 16 7 4.0625 -2.3331 -4.2457 17 6 3.3442 -2.5509 -5.5038 18 6 1.8919 -2.0955 -5.3474 19 6 1.1532 -2.3189 -6.6417 20 1 1.6680 -2.7438 -7.4909 21 6 -0.1800 -1.9821 -6.7416 22 7 -0.8070 -1.4652 -5.7075 23 14 -1.0959 -2.2598 -8.3458 24 1 -2.5054 -1.8176 -8.1941 25 1 -1.0640 -3.7039 -8.6905 26 1 -0.4463 -1.4781 -9.4285 27 6 4.7824 -1.1000 -3.9061 28 6 3.7695 -0.5117 -1.6871 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 2.7368 -2.8782 1.3921 33 1 2.6398 -1.2563 2.1195 34 1 1.1509 -2.1158 1.6584 35 1 4.5004 -0.8805 1.5681 36 1 3.7133 0.5868 0.9552 37 1 6.2987 0.5707 1.0755 38 1 5.5445 1.1514 -0.4182 39 1 7.0740 -1.0321 -2.4743 40 1 6.2399 0.5159 -2.2236 41 1 4.4617 -2.8851 -1.1571 42 1 5.9650 -3.0874 -2.1084 43 1 3.3673 -3.6110 -5.7565 44 1 3.8212 -1.9774 -6.2985 45 1 1.8689 -1.0354 -5.0947 46 1 1.4149 -2.6690 -4.5527 47 1 -0.3315 -1.3214 -4.8743 48 1 5.7442 -1.0717 -4.4180 49 1 4.1853 -0.2285 -4.1750 50 1 3.9054 0.5683 -1.6296 51 1 2.8659 -0.7399 -2.2524 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273982171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:19 Heat of formation + Delta-G solvation = -98.108932 kcal Electronic energy + Delta-G solvation = -32394.603370 eV Core-core repulsion = 28294.698267 eV Total energy + Delta-G solvation = -4099.905103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.36512 -40.00674 -38.63117 -36.35661 -36.07093 -34.52067 -32.89136 -32.19694 -30.08400 -29.57195 -28.52546 -27.99669 -26.20068 -25.17425 -24.03078 -23.87987 -21.66895 -21.40978 -19.79922 -19.33402 -18.97618 -16.99113 -16.93041 -16.59629 -16.49647 -16.30046 -15.71320 -15.43928 -15.16820 -14.96967 -14.56377 -14.26097 -13.91744 -13.81967 -13.72808 -13.31738 -13.25935 -13.15589 -12.84405 -12.80477 -12.63680 -12.31608 -12.27700 -12.16588 -12.04775 -11.77601 -11.66597 -11.53304 -11.13064 -10.98849 -10.87721 -10.74730 -10.66988 -10.37180 -10.25623 -10.12630 -10.08641 -9.75187 -9.24043 -8.70311 -8.36913 -8.10866 -8.07528 -6.41848 -4.10784 1.72657 3.08318 3.36426 3.41871 3.44345 3.60024 3.62458 3.76370 3.85727 4.48786 4.52283 4.56802 4.60926 4.72579 4.81363 4.85829 4.93753 4.95679 5.05738 5.18352 5.23527 5.27795 5.33921 5.36967 5.39764 5.41182 5.48515 5.56044 5.58164 5.60986 5.71577 5.74478 5.77433 5.81325 5.85526 5.95446 5.98644 6.07376 6.34689 6.37957 6.64029 6.76475 6.91339 6.96045 7.10912 7.27361 7.32300 7.42965 7.73153 8.12470 8.39688 8.70611 8.81827 9.61611 10.98913 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.004063 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.675154 B = 6889.647644 C = 8252.944355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.333 3.667 3 O -0.458 6.458 4 C 0.035 3.965 5 H 0.116 0.884 6 C -0.138 4.138 7 N -0.521 5.521 8 C 0.016 3.984 9 C 0.063 3.937 10 O -0.357 6.357 11 C 0.082 3.918 12 C -0.099 4.099 13 C -0.131 4.131 14 C 0.511 3.489 15 O -0.538 6.538 16 N -0.615 5.615 17 C 0.135 3.865 18 C 0.002 3.998 19 C -0.602 4.602 20 H 0.050 0.950 21 C 0.018 3.982 22 N -0.910 5.910 23 Si 1.069 2.931 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.288 1.288 27 C 0.115 3.885 28 C 0.069 3.931 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.124 0.876 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.005 0.995 46 H 0.011 0.989 47 H 0.266 0.734 48 H 0.069 0.931 49 H 0.078 0.922 50 H 0.054 0.946 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.543 5.079 15.048 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C 0.208 3.792 3 O -0.333 6.333 4 C -0.075 4.075 5 H 0.134 0.866 6 C -0.195 4.195 7 N -0.243 5.243 8 C -0.111 4.111 9 C -0.016 4.016 10 O -0.274 6.274 11 C 0.005 3.995 12 C -0.101 4.101 13 C -0.171 4.171 14 C 0.299 3.701 15 O -0.416 6.416 16 N -0.348 5.348 17 C 0.014 3.986 18 C -0.036 4.036 19 C -0.640 4.640 20 H 0.069 0.931 21 C -0.186 4.186 22 N -0.546 5.546 23 Si 0.897 3.103 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.214 1.214 27 C -0.010 4.010 28 C -0.059 4.059 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.142 0.858 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.023 0.977 46 H 0.029 0.971 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.096 0.904 50 H 0.072 0.928 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.456 4.650 14.290 18.307 hybrid contribution 0.693 0.831 0.461 1.176 sum 11.148 5.481 14.751 19.285 Atomic orbital electron populations 1.22398 0.94335 1.05105 1.04990 1.25818 0.92897 0.91209 0.69303 1.90320 1.71630 1.35344 1.35967 1.22441 0.88626 0.95600 1.00821 0.86628 1.21770 1.02727 1.01833 0.93220 1.60788 1.11442 1.50104 1.01996 1.23448 0.95304 0.97542 0.94766 1.22315 0.91795 0.90992 0.96463 1.87825 1.65655 1.57187 1.16745 1.21461 0.96046 0.99959 0.82024 1.21083 0.96826 0.97468 0.94717 1.22405 1.01631 0.92995 1.00061 1.21012 0.80133 0.84569 0.84431 1.90694 1.49767 1.20240 1.80866 1.48542 1.52193 1.15290 1.18802 1.21611 0.93738 1.01362 0.81854 1.19504 0.90643 0.95477 0.98011 1.21923 0.97865 1.46395 0.97841 0.93135 1.25840 0.95177 0.93771 1.03824 1.70793 1.39620 1.41168 1.03063 0.83538 0.76149 0.76436 0.74145 1.20749 1.21323 1.21411 1.21985 0.97003 0.88880 0.93106 1.21814 0.98007 0.97266 0.88849 0.88902 0.90100 0.88192 0.90189 0.92164 0.91385 0.90557 0.91075 0.89647 0.93483 0.88664 0.92490 0.85761 0.88943 0.90961 0.91639 0.97665 0.97098 0.92331 0.91241 0.90373 0.92773 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.14 10.24 36.00 0.37 -1.77 16 2 C 0.33 3.96 5.76 -29.04 -0.17 3.79 16 3 O -0.46 -6.50 13.41 5.99 0.08 -6.42 16 4 C 0.03 0.39 2.53 -68.86 -0.17 0.22 16 5 H 0.12 1.46 8.01 -51.93 -0.42 1.04 16 6 C -0.14 -1.19 8.76 37.16 0.33 -0.86 16 7 N -0.52 -6.15 2.30 -227.61 -0.52 -6.68 16 8 C 0.02 0.17 4.57 -2.33 -0.01 0.16 16 9 C 0.06 0.61 6.06 37.78 0.23 0.84 16 10 O -0.36 -3.94 10.33 -32.92 -0.34 -4.28 16 11 C 0.08 0.81 4.90 33.97 0.17 0.98 16 12 C -0.10 -1.20 0.63 -155.47 -0.10 -1.30 16 13 C -0.13 -1.84 5.57 -26.73 -0.15 -1.99 16 14 C 0.51 9.58 7.98 -10.87 -0.09 9.49 16 15 O -0.54 -12.49 17.59 5.55 0.10 -12.39 16 16 N -0.61 -11.04 2.93 -172.33 -0.51 -11.54 16 17 C 0.13 2.86 5.87 -4.04 -0.02 2.84 16 18 C 0.00 0.04 4.61 -27.88 -0.13 -0.09 16 19 C -0.60 -17.10 9.11 -34.44 -0.31 -17.41 16 20 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 21 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 22 N -0.91 -27.65 13.65 55.43 0.76 -26.89 16 23 Si 1.07 25.23 29.90 -169.99 -5.08 20.15 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 27 C 0.11 1.55 6.24 -3.04 -0.02 1.53 16 28 C 0.07 0.91 3.12 -4.83 -0.02 0.89 16 29 H 0.09 0.70 7.90 -51.93 -0.41 0.29 16 30 H 0.08 0.84 8.12 -51.92 -0.42 0.42 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.49 6.59 -51.93 -0.34 0.14 16 34 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16 35 H 0.08 0.73 6.96 -51.93 -0.36 0.37 16 36 H 0.07 0.82 5.28 -51.93 -0.27 0.54 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.46 6.57 -51.93 -0.34 0.12 16 39 H 0.10 0.83 8.12 -51.93 -0.42 0.41 16 40 H 0.06 0.50 7.48 -51.93 -0.39 0.11 16 41 H 0.12 1.82 6.36 -51.93 -0.33 1.49 16 42 H 0.09 1.19 7.95 -51.93 -0.41 0.78 16 43 H 0.07 1.65 7.92 -51.93 -0.41 1.24 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.01 0.14 8.01 -51.93 -0.42 -0.28 16 46 H 0.01 0.31 8.01 -51.93 -0.42 -0.11 16 47 H 0.27 8.06 7.22 -40.82 -0.29 7.77 16 48 H 0.07 0.78 7.94 -51.93 -0.41 0.36 16 49 H 0.08 1.09 7.87 -51.93 -0.41 0.68 16 50 H 0.05 0.72 6.33 -51.93 -0.33 0.40 16 51 H 0.08 1.21 7.24 -51.93 -0.38 0.84 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -34.74 390.96 -8.31 -43.05 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.49 Total: 1.38 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.19 Total: -2.26 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.27 Total: -45.12 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.16 Total: -23.09 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.74 -8.31 -43.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273982171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.062 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds