Wall clock time and date at job start Tue Mar 31 2020 21:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20766 * 120.00297 * 2 1 4 4 C 1.50699 * 120.00243 * 180.02562 * 2 1 3 5 5 H 1.08997 * 109.47482 * 44.99668 * 4 2 1 6 6 C 1.53007 * 109.46946 * 284.99846 * 4 2 1 7 7 N 1.46900 * 109.47306 * 165.00019 * 4 2 1 8 8 C 1.48480 * 111.00037 * 66.04741 * 7 4 2 9 9 C 1.54183 * 111.98687 * 192.47549 * 8 7 4 10 10 O 1.39996 * 113.28621 * 318.68265 * 9 8 7 11 11 C 1.44600 * 112.92949 * 94.36475 * 10 9 8 12 12 C 1.46301 * 111.21893 * 280.80570 * 11 10 9 13 13 C 1.54661 * 112.37380 * 297.02437 * 12 11 10 14 14 C 1.51260 * 104.22695 * 214.59563 * 13 12 11 15 15 O 1.21286 * 124.93511 * 196.08154 * 14 13 12 16 16 N 1.34410 * 110.12472 * 16.08516 * 14 13 12 17 17 C 1.46496 * 124.34433 * 180.45471 * 16 14 13 18 18 C 1.53006 * 109.46995 * 90.02365 * 17 16 14 19 19 C 1.50698 * 109.47184 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99819 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00046 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00310 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00304 * 23 21 19 27 27 C 1.46771 * 111.31354 * 0.72272 * 16 14 13 28 28 C 1.44083 * 111.00066 * 297.91377 * 7 4 2 29 29 H 1.09000 * 109.47363 * 240.00422 * 1 2 3 30 30 H 1.09009 * 109.47130 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47317 * 119.99972 * 1 2 3 32 32 H 1.09000 * 109.47248 * 179.97438 * 6 4 2 33 33 H 1.08997 * 109.46884 * 300.00188 * 6 4 2 34 34 H 1.08999 * 109.46759 * 60.00151 * 6 4 2 35 35 H 1.08991 * 108.98144 * 71.82617 * 8 7 4 36 36 H 1.08997 * 108.90793 * 313.07015 * 8 7 4 37 37 H 1.08995 * 108.71824 * 197.70222 * 9 8 7 38 38 H 1.08999 * 108.62415 * 79.59036 * 9 8 7 39 39 H 1.09005 * 109.12967 * 160.36257 * 11 10 9 40 40 H 1.09005 * 109.08447 * 41.22432 * 11 10 9 41 41 H 1.09005 * 110.47951 * 95.91226 * 13 12 11 42 42 H 1.09002 * 110.59350 * 333.33886 * 13 12 11 43 43 H 1.09001 * 109.47001 * 330.02664 * 17 16 14 44 44 H 1.09001 * 109.47464 * 210.02104 * 17 16 14 45 45 H 1.08998 * 109.46509 * 60.00302 * 18 17 16 46 46 H 1.08993 * 109.46955 * 299.99862 * 18 17 16 47 47 H 0.97001 * 119.99934 * 359.97438 * 22 21 19 48 48 H 1.08997 * 110.23848 * 101.80483 * 27 16 14 49 49 H 1.09001 * 110.23888 * 223.79351 * 27 16 14 50 50 H 1.08998 * 109.72973 * 99.86234 * 28 7 4 51 51 H 1.08997 * 109.72990 * 339.17938 * 28 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.8129 -1.9828 -0.7275 6 6 2.1922 -1.9340 1.3926 7 7 3.6639 -1.0600 -0.3589 8 6 4.3478 -0.2578 0.6867 9 6 5.7129 0.2737 0.2057 10 8 6.4449 -0.6663 -0.5294 11 6 6.2500 -0.5409 -1.9567 12 6 4.9886 -1.1530 -2.3746 13 6 4.9557 -2.6758 -2.1060 14 6 4.1516 -3.2390 -3.2567 15 8 3.6590 -4.3470 -3.2832 16 7 4.0625 -2.3331 -4.2457 17 6 3.3442 -2.5509 -5.5038 18 6 1.8919 -2.0955 -5.3474 19 6 1.1532 -2.3189 -6.6417 20 1 1.6680 -2.7438 -7.4909 21 6 -0.1800 -1.9821 -6.7416 22 7 -0.8070 -1.4652 -5.7075 23 14 -1.0959 -2.2598 -8.3458 24 1 -2.5054 -1.8176 -8.1941 25 1 -1.0640 -3.7039 -8.6905 26 1 -0.4463 -1.4781 -9.4285 27 6 4.7824 -1.1000 -3.9061 28 6 3.7695 -0.5117 -1.6871 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 2.7368 -2.8782 1.3921 33 1 2.6398 -1.2563 2.1195 34 1 1.1509 -2.1158 1.6584 35 1 4.5004 -0.8805 1.5681 36 1 3.7133 0.5868 0.9552 37 1 6.2987 0.5707 1.0755 38 1 5.5445 1.1514 -0.4182 39 1 7.0740 -1.0321 -2.4743 40 1 6.2399 0.5159 -2.2236 41 1 4.4617 -2.8851 -1.1571 42 1 5.9650 -3.0874 -2.1084 43 1 3.3673 -3.6110 -5.7565 44 1 3.8212 -1.9774 -6.2985 45 1 1.8689 -1.0354 -5.0947 46 1 1.4149 -2.6690 -4.5527 47 1 -0.3315 -1.3214 -4.8743 48 1 5.7442 -1.0717 -4.4180 49 1 4.1853 -0.2285 -4.1750 50 1 3.9054 0.5683 -1.6296 51 1 2.8659 -0.7399 -2.2524 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273982171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:18 Heat of formation + Delta-G solvation = -121.034262 kcal Electronic energy + Delta-G solvation = -32395.597487 eV Core-core repulsion = 28294.698267 eV Total energy + Delta-G solvation = -4100.899220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.45824 -41.16882 -39.72519 -37.60989 -37.19991 -36.31976 -34.60876 -33.11408 -31.69717 -30.43759 -29.64587 -29.27241 -27.28349 -26.52753 -25.59992 -24.84357 -23.61007 -22.30549 -20.85692 -20.52030 -20.25840 -19.06191 -17.88990 -17.78522 -17.55251 -17.41929 -16.90135 -16.52242 -16.36655 -16.13856 -15.67867 -15.60068 -15.31278 -15.15806 -14.89280 -14.82445 -14.58503 -14.47016 -14.34284 -13.85055 -13.77716 -13.65977 -13.46483 -13.19089 -13.09383 -12.90080 -12.76848 -12.70691 -12.47162 -12.39517 -12.20535 -12.12582 -11.94528 -11.83686 -11.76804 -11.53115 -11.24949 -10.97587 -10.72843 -10.59728 -10.51544 -9.67211 -9.07356 -8.75415 -6.46340 0.74929 1.50590 1.58743 1.59551 1.78560 2.06387 2.51874 2.55570 2.90707 2.93543 3.10857 3.38932 3.53697 3.58075 3.69922 3.88529 3.96330 4.02299 4.11802 4.14534 4.21849 4.24100 4.34215 4.39803 4.41539 4.44458 4.48521 4.55291 4.62991 4.65391 4.71367 4.73286 4.75369 4.76947 4.78503 4.87156 4.95727 5.01384 5.07383 5.08938 5.16495 5.23296 5.25507 5.53103 5.81730 5.92201 6.02136 6.09919 6.22984 6.30951 6.35405 6.47677 7.17950 7.36728 8.64990 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.004063 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.675154 B = 6889.647644 C = 8252.944355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.333 3.667 3 O -0.482 6.482 4 C 0.033 3.967 5 H 0.093 0.907 6 C -0.131 4.131 7 N -0.524 5.524 8 C 0.018 3.982 9 C 0.061 3.939 10 O -0.364 6.364 11 C 0.081 3.919 12 C -0.082 4.082 13 C -0.115 4.115 14 C 0.500 3.500 15 O -0.593 6.593 16 N -0.617 5.617 17 C 0.148 3.852 18 C 0.014 3.986 19 C -0.620 4.620 20 H 0.057 0.943 21 C -0.035 4.035 22 N -0.932 5.932 23 Si 1.119 2.881 24 H -0.283 1.283 25 H -0.272 1.272 26 H -0.263 1.263 27 C 0.110 3.890 28 C 0.076 3.924 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.047 0.953 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.053 0.947 44 H 0.089 0.911 45 H -0.007 1.007 46 H -0.030 1.030 47 H 0.252 0.748 48 H 0.108 0.892 49 H 0.073 0.927 50 H 0.052 0.948 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.455 5.777 15.196 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C 0.210 3.790 3 O -0.359 6.359 4 C -0.077 4.077 5 H 0.111 0.889 6 C -0.188 4.188 7 N -0.247 5.247 8 C -0.109 4.109 9 C -0.017 4.017 10 O -0.281 6.281 11 C 0.004 3.996 12 C -0.084 4.084 13 C -0.155 4.155 14 C 0.290 3.710 15 O -0.474 6.474 16 N -0.349 5.349 17 C 0.026 3.974 18 C -0.024 4.024 19 C -0.658 4.658 20 H 0.075 0.925 21 C -0.233 4.233 22 N -0.569 5.569 23 Si 0.939 3.061 24 H -0.208 1.208 25 H -0.197 1.197 26 H -0.188 1.188 27 C -0.013 4.013 28 C -0.053 4.053 29 H 0.142 0.858 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.065 0.935 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.072 0.928 44 H 0.108 0.892 45 H 0.011 0.989 46 H -0.011 1.011 47 H 0.061 0.939 48 H 0.126 0.874 49 H 0.091 0.909 50 H 0.070 0.930 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.414 5.379 14.460 19.802 hybrid contribution 0.060 0.622 0.456 0.774 sum 12.474 6.001 14.916 20.350 Atomic orbital electron populations 1.22406 0.93197 1.05233 1.05794 1.26073 0.93666 0.91037 0.68257 1.90307 1.72190 1.36043 1.37328 1.22450 0.88386 0.95005 1.01863 0.88930 1.21763 1.04034 1.01610 0.91438 1.60850 1.11809 1.50202 1.01796 1.23498 0.95553 0.97214 0.94598 1.22420 0.91439 0.90602 0.97257 1.87825 1.65556 1.57639 1.17110 1.21569 0.94969 1.01096 0.81933 1.21079 0.97761 0.95999 0.93522 1.22338 1.01643 0.94117 0.97366 1.21888 0.79744 0.83886 0.85482 1.90651 1.52119 1.22698 1.81938 1.48575 1.51749 1.16955 1.17628 1.21208 0.91629 1.00350 0.84232 1.19324 0.93343 0.93964 0.95812 1.22362 0.98566 1.46091 0.98822 0.92477 1.27478 0.96673 0.92710 1.06415 1.70926 1.39778 1.42964 1.03249 0.82924 0.74938 0.77515 0.70697 1.20825 1.19711 1.18764 1.22300 0.97995 0.86461 0.94515 1.21673 0.96938 0.97236 0.89469 0.85841 0.90313 0.89497 0.90285 0.91151 0.89708 0.89362 0.92020 0.87478 0.93501 0.86325 0.90701 0.86209 0.86595 0.92834 0.89233 0.98887 1.01148 0.93902 0.87381 0.90883 0.92993 0.94340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.36 10.24 71.23 0.73 -3.63 16 2 C 0.33 8.18 5.76 29.10 0.17 8.34 16 3 O -0.48 -13.95 13.41 -1.47 -0.02 -13.97 16 4 C 0.03 0.76 2.53 44.17 0.11 0.87 16 5 H 0.09 2.57 8.01 -2.39 -0.02 2.55 16 6 C -0.13 -2.15 8.76 71.98 0.63 -1.52 16 7 N -0.52 -12.29 2.30 -874.01 -2.01 -14.30 16 8 C 0.02 0.35 4.57 86.40 0.39 0.74 16 9 C 0.06 1.03 6.06 72.38 0.44 1.47 16 10 O -0.36 -6.86 10.33 -140.69 -1.45 -8.31 16 11 C 0.08 1.33 4.90 69.92 0.34 1.68 16 12 C -0.08 -1.86 0.63 -52.81 -0.03 -1.90 16 13 C -0.11 -3.12 5.57 30.59 0.17 -2.95 16 14 C 0.50 19.15 7.98 87.89 0.70 19.85 16 15 O -0.59 -28.77 17.59 -3.05 -0.05 -28.82 16 16 N -0.62 -22.35 2.93 -817.72 -2.40 -24.75 16 17 C 0.15 6.41 5.87 86.38 0.51 6.92 16 18 C 0.01 0.73 4.61 29.85 0.14 0.87 16 19 C -0.62 -35.95 9.11 25.60 0.23 -35.72 16 20 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 21 C -0.04 -2.06 5.46 84.65 0.46 -1.59 16 22 N -0.93 -58.37 13.65 21.45 0.29 -58.08 16 23 Si 1.12 50.44 29.90 68.60 2.05 52.49 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 27 C 0.11 2.81 6.24 86.88 0.54 3.35 16 28 C 0.08 2.01 3.12 87.15 0.27 2.29 16 29 H 0.12 1.77 7.90 -2.39 -0.02 1.75 16 30 H 0.08 1.68 8.12 -2.38 -0.02 1.66 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.02 6.59 -2.39 -0.02 1.01 16 34 H 0.08 1.10 7.89 -2.39 -0.02 1.08 16 35 H 0.09 1.51 6.96 -2.39 -0.02 1.50 16 36 H 0.06 1.36 5.28 -2.39 -0.01 1.35 16 37 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 0.80 6.57 -2.39 -0.02 0.79 16 39 H 0.12 1.49 8.12 -2.38 -0.02 1.47 16 40 H 0.07 1.04 7.48 -2.38 -0.02 1.02 16 41 H 0.12 3.47 6.36 -2.38 -0.02 3.45 16 42 H 0.12 2.67 7.95 -2.39 -0.02 2.66 16 43 H 0.05 2.52 7.92 -2.39 -0.02 2.50 16 44 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 45 H -0.01 -0.40 8.01 -2.39 -0.02 -0.42 16 46 H -0.03 -1.83 8.01 -2.39 -0.02 -1.85 16 47 H 0.25 16.08 7.22 -92.71 -0.67 15.41 16 48 H 0.11 2.01 7.94 -2.39 -0.02 1.99 16 49 H 0.07 1.98 7.87 -2.39 -0.02 1.96 16 50 H 0.05 1.39 6.33 -2.39 -0.02 1.37 16 51 H 0.04 1.30 7.24 -2.39 -0.02 1.28 16 Total: -1.00 -78.98 390.96 3.23 -75.75 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 1.02 Total: 20.94 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 5.81 Total: -0.94 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -4.12 Total: -97.13 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -1.53 Total: -51.10 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 2.05 Total: 52.49 kcal Total: -78.98 3.23 -75.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273982171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.285 kcal (2) G-P(sol) polarization free energy of solvation -78.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds