Wall clock time and date at job start Tue Mar 31 2020 21:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20764 * 119.99967 * 2 1 4 4 C 1.50699 * 120.00094 * 179.97438 * 2 1 3 5 5 H 1.08994 * 109.47606 * 320.72904 * 4 2 1 6 6 C 1.53000 * 109.46856 * 80.72764 * 4 2 1 7 7 N 1.46902 * 109.47497 * 200.72364 * 4 2 1 8 8 C 1.48469 * 110.99435 * 68.41297 * 7 4 2 9 9 C 1.54190 * 111.97704 * 192.46511 * 8 7 4 10 10 O 1.39977 * 113.29654 * 318.69339 * 9 8 7 11 11 C 1.44600 * 112.92569 * 94.36172 * 10 9 8 12 12 C 1.46311 * 111.22832 * 280.80154 * 11 10 9 13 13 C 1.54657 * 112.39868 * 297.02696 * 12 11 10 14 14 C 1.51263 * 104.21255 * 214.56698 * 13 12 11 15 15 O 1.21278 * 124.93525 * 196.09520 * 14 13 12 16 16 N 1.34407 * 110.12883 * 16.11109 * 14 13 12 17 17 C 1.46500 * 124.34735 * 180.38243 * 16 14 13 18 18 C 1.53002 * 109.46701 * 90.02970 * 17 16 14 19 19 C 1.50704 * 109.46667 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00617 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99445 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00609 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99667 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46946 * 179.97438 * 23 21 19 25 25 H 1.48499 * 109.47154 * 60.00144 * 23 21 19 26 26 H 1.48496 * 109.47330 * 300.00145 * 23 21 19 27 27 C 1.46772 * 111.31070 * 0.65797 * 16 14 13 28 28 C 1.44073 * 110.99975 * 300.28951 * 7 4 2 29 29 H 1.08994 * 109.47273 * 270.00102 * 1 2 3 30 30 H 1.09007 * 109.46978 * 30.00347 * 1 2 3 31 31 H 1.09000 * 109.47201 * 149.99770 * 1 2 3 32 32 H 1.09004 * 109.47571 * 300.00193 * 6 4 2 33 33 H 1.09002 * 109.47411 * 60.00378 * 6 4 2 34 34 H 1.09006 * 109.47224 * 180.02562 * 6 4 2 35 35 H 1.09001 * 108.97806 * 71.82683 * 8 7 4 36 36 H 1.08992 * 108.98339 * 313.11382 * 8 7 4 37 37 H 1.09003 * 108.71667 * 197.70260 * 9 8 7 38 38 H 1.09004 * 108.61662 * 79.60993 * 9 8 7 39 39 H 1.08998 * 109.12899 * 160.35095 * 11 10 9 40 40 H 1.09000 * 109.07793 * 41.22158 * 11 10 9 41 41 H 1.09004 * 110.47946 * 95.88176 * 13 12 11 42 42 H 1.08994 * 110.59576 * 333.30500 * 13 12 11 43 43 H 1.09002 * 109.47097 * 330.03341 * 17 16 14 44 44 H 1.08998 * 109.47284 * 210.02836 * 17 16 14 45 45 H 1.08993 * 109.47208 * 60.00334 * 18 17 16 46 46 H 1.08998 * 109.47143 * 299.99953 * 18 17 16 47 47 H 0.97002 * 119.99516 * 0.02562 * 22 21 19 48 48 H 1.08996 * 110.23966 * 101.86230 * 27 16 14 49 49 H 1.08999 * 110.23856 * 223.84662 * 27 16 14 50 50 H 1.09003 * 109.73190 * 99.86958 * 28 7 4 51 51 H 1.08997 * 109.72938 * 339.18551 * 28 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2604 -1.3051 0.0006 5 1 1.7532 -2.0173 0.6513 6 6 2.3141 -1.8635 -1.4228 7 7 3.6271 -1.0813 0.4906 8 6 3.6244 -0.7319 1.9336 9 6 4.9925 -0.1952 2.4000 10 8 6.0760 -0.9018 1.8649 11 6 6.6044 -0.2968 0.6625 12 6 5.7796 -0.6227 -0.5011 13 6 5.7582 -2.1396 -0.8021 14 6 5.6866 -2.2179 -2.3110 15 8 5.3762 -3.2065 -2.9412 16 7 6.0173 -1.0327 -2.8518 17 6 6.0430 -0.7592 -4.2909 18 6 4.6701 -0.2532 -4.7382 19 6 4.6962 0.0276 -6.2187 20 1 5.6015 -0.1378 -6.7838 21 6 3.5646 0.4966 -6.8514 22 7 2.4622 0.6985 -6.1632 23 14 3.5972 0.8454 -8.6863 24 1 2.2646 1.3363 -9.1206 25 1 3.9283 -0.4017 -9.4214 26 1 4.6242 1.8781 -8.9758 27 6 6.3559 -0.0495 -1.8160 28 6 4.3268 -0.1379 -0.3438 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.3001 -2.0296 -1.7866 33 1 2.8215 -1.1514 -2.0737 34 1 2.8588 -2.8078 -1.4224 35 1 3.3760 -1.6210 2.5131 36 1 2.8652 0.0294 2.1125 37 1 5.0391 -0.2542 3.4874 38 1 5.0758 0.8503 2.1032 39 1 7.6180 -0.6610 0.4952 40 1 6.6305 0.7854 0.7901 41 1 4.8803 -2.6049 -0.3538 42 1 6.6687 -2.6155 -0.4382 43 1 6.2864 -1.6745 -4.8304 44 1 6.7965 -0.0008 -4.5032 45 1 4.4266 0.6620 -4.1987 46 1 3.9165 -1.0116 -4.5259 47 1 2.4454 0.5178 -5.2103 48 1 7.4376 0.0608 -1.7400 49 1 5.8931 0.9111 -2.0422 50 1 4.3160 0.8463 0.1244 51 1 3.8483 -0.0861 -1.3218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273982173.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:22 Heat of formation + Delta-G solvation = -97.147679 kcal Electronic energy + Delta-G solvation = -32750.356559 eV Core-core repulsion = 28650.493139 eV Total energy + Delta-G solvation = -4099.863420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40911 -39.88867 -38.65262 -36.36932 -36.02385 -34.45986 -32.79509 -32.26928 -30.19148 -29.62429 -28.01018 -27.75746 -26.78403 -25.42406 -23.92276 -23.36259 -21.64674 -21.45445 -19.96888 -19.24858 -18.85878 -17.16206 -16.97627 -16.66319 -16.26262 -16.04980 -15.62835 -15.48682 -15.14940 -15.02757 -14.55805 -14.26472 -14.05039 -13.77124 -13.71702 -13.29195 -13.19335 -13.10100 -12.77963 -12.70676 -12.52933 -12.45666 -12.14627 -12.10632 -11.95188 -11.78700 -11.65261 -11.42898 -11.14196 -10.89966 -10.83665 -10.69035 -10.64817 -10.33571 -10.12014 -10.08761 -10.06588 -9.80523 -9.21082 -8.67014 -8.33746 -8.17580 -8.03911 -6.38351 -4.07377 1.77471 3.11196 3.36766 3.43446 3.46196 3.61261 3.64305 3.74490 3.87402 4.52608 4.54862 4.60057 4.62139 4.72924 4.80607 4.87264 4.92951 5.01022 5.09427 5.18233 5.21312 5.25444 5.30999 5.36472 5.40259 5.41390 5.51933 5.53361 5.65982 5.70804 5.74556 5.76540 5.80516 5.81771 5.97845 6.04198 6.12999 6.30846 6.37797 6.42672 6.67360 6.77687 6.94648 6.98080 7.07769 7.31752 7.36774 7.46549 7.76681 8.15813 8.43066 8.73736 8.85159 9.65116 11.02360 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.004238 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.274132 B = 6605.648768 C = 7943.710867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.328 3.672 3 O -0.453 6.453 4 C 0.040 3.960 5 H 0.110 0.890 6 C -0.145 4.145 7 N -0.522 5.522 8 C 0.029 3.971 9 C 0.063 3.937 10 O -0.355 6.355 11 C 0.082 3.918 12 C -0.104 4.104 13 C -0.132 4.132 14 C 0.512 3.488 15 O -0.538 6.538 16 N -0.614 5.614 17 C 0.135 3.865 18 C 0.002 3.998 19 C -0.602 4.602 20 H 0.050 0.950 21 C 0.018 3.982 22 N -0.910 5.910 23 Si 1.069 2.931 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.288 1.288 27 C 0.115 3.885 28 C 0.071 3.929 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.125 0.875 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.005 0.995 46 H 0.011 0.989 47 H 0.267 0.733 48 H 0.068 0.932 49 H 0.078 0.922 50 H 0.058 0.942 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.885 -1.333 20.496 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C 0.202 3.798 3 O -0.327 6.327 4 C -0.070 4.070 5 H 0.128 0.872 6 C -0.202 4.202 7 N -0.245 5.245 8 C -0.098 4.098 9 C -0.015 4.015 10 O -0.273 6.273 11 C 0.005 3.995 12 C -0.106 4.106 13 C -0.173 4.173 14 C 0.300 3.700 15 O -0.416 6.416 16 N -0.348 5.348 17 C 0.014 3.986 18 C -0.036 4.036 19 C -0.640 4.640 20 H 0.068 0.932 21 C -0.186 4.186 22 N -0.546 5.546 23 Si 0.897 3.103 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.214 1.214 27 C -0.010 4.010 28 C -0.057 4.057 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.142 0.858 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.024 0.976 46 H 0.029 0.971 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.097 0.903 50 H 0.076 0.924 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.462 -1.322 18.855 18.958 hybrid contribution 0.206 0.553 1.177 1.317 sum 1.667 -0.769 20.033 20.117 Atomic orbital electron populations 1.22338 0.94618 1.05304 1.04193 1.25782 0.92731 0.91462 0.69855 1.90416 1.71703 1.35239 1.35296 1.22396 0.89062 0.95604 0.99931 0.87218 1.21886 1.03137 1.02851 0.92310 1.60793 1.13203 1.48475 1.01997 1.23213 0.97874 1.00333 0.88381 1.22279 0.86063 0.94973 0.98219 1.87823 1.46359 1.52903 1.40171 1.21477 0.96815 0.97306 0.83863 1.21156 0.97093 0.97246 0.95114 1.22436 1.05992 0.95584 0.93245 1.20974 0.76014 0.82651 0.90370 1.90689 1.48657 1.33827 1.68418 1.48535 1.67179 1.11782 1.07265 1.21609 1.00397 1.00595 0.75956 1.19502 0.91863 0.95314 0.96922 1.21917 1.00137 1.48792 0.93202 0.93168 1.25835 0.92279 0.93924 1.06602 1.70784 1.28306 1.45649 1.09861 0.83543 0.75944 0.76498 0.74287 1.20770 1.21352 1.21423 1.21973 0.99495 0.93355 0.86160 1.21928 0.91956 0.93418 0.98420 0.88926 0.89598 0.89366 0.91212 0.91343 0.90018 0.90168 0.94028 0.89478 0.93356 0.88687 0.92456 0.85757 0.89103 0.90987 0.91679 0.97644 0.97073 0.92261 0.91353 0.90333 0.92397 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.87 10.25 36.00 0.37 -1.50 16 2 C 0.33 3.96 5.37 -29.04 -0.16 3.80 16 3 O -0.45 -6.96 13.92 6.00 0.08 -6.88 16 4 C 0.04 0.45 2.65 -68.86 -0.18 0.27 16 5 H 0.11 0.95 8.10 -51.93 -0.42 0.53 16 6 C -0.14 -2.02 8.96 37.16 0.33 -1.68 16 7 N -0.52 -6.17 2.26 -227.61 -0.52 -6.69 16 8 C 0.03 0.29 5.64 -2.33 -0.01 0.27 16 9 C 0.06 0.58 6.06 37.78 0.23 0.81 16 10 O -0.36 -3.85 10.33 -32.87 -0.34 -4.19 16 11 C 0.08 0.83 4.90 33.98 0.17 0.99 16 12 C -0.10 -1.30 0.63 -155.49 -0.10 -1.40 16 13 C -0.13 -1.89 5.57 -26.74 -0.15 -2.04 16 14 C 0.51 9.62 7.98 -10.87 -0.09 9.53 16 15 O -0.54 -12.38 17.59 5.56 0.10 -12.28 16 16 N -0.61 -11.20 2.93 -172.36 -0.51 -11.71 16 17 C 0.13 2.91 5.87 -4.04 -0.02 2.88 16 18 C 0.00 0.05 4.61 -27.88 -0.13 -0.08 16 19 C -0.60 -17.32 9.11 -34.44 -0.31 -17.63 16 20 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 21 C 0.02 0.51 5.46 -17.82 -0.10 0.42 16 22 N -0.91 -28.13 13.65 55.43 0.76 -27.38 16 23 Si 1.07 25.56 29.90 -169.99 -5.08 20.48 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.11 1.60 6.24 -3.06 -0.02 1.59 16 28 C 0.07 0.97 2.28 -4.83 -0.01 0.96 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.68 8.06 -51.93 -0.42 0.26 16 32 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.07 1.21 6.05 -51.93 -0.31 0.89 16 34 H 0.08 1.21 7.75 -51.93 -0.40 0.81 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.42 6.68 -51.93 -0.35 0.07 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.45 6.57 -51.93 -0.34 0.11 16 39 H 0.10 0.84 8.12 -51.93 -0.42 0.42 16 40 H 0.06 0.51 7.48 -51.93 -0.39 0.12 16 41 H 0.12 1.83 5.89 -51.93 -0.31 1.53 16 42 H 0.09 1.19 7.95 -51.93 -0.41 0.77 16 43 H 0.07 1.66 7.92 -51.93 -0.41 1.25 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 46 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 47 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 48 H 0.07 0.79 7.94 -51.93 -0.41 0.38 16 49 H 0.08 1.15 7.87 -51.93 -0.41 0.74 16 50 H 0.06 0.81 5.90 -51.93 -0.31 0.51 16 51 H 0.09 1.46 4.94 -51.93 -0.26 1.21 16 LS Contribution 390.51 15.07 5.88 5.88 Total: -1.00 -35.34 390.51 -8.23 -43.57 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.43 Total: 2.00 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -0.18 Total: -2.82 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.26 Total: -45.77 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.16 Total: -23.34 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.48 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.34 -8.23 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273982173.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.579 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds