Wall clock time and date at job start Tue Mar 31 2020 21:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20764 * 119.99967 * 2 1 4 4 C 1.50699 * 120.00094 * 179.97438 * 2 1 3 5 5 H 1.08994 * 109.47606 * 320.72904 * 4 2 1 6 6 C 1.53000 * 109.46856 * 80.72764 * 4 2 1 7 7 N 1.46902 * 109.47497 * 200.72364 * 4 2 1 8 8 C 1.48469 * 110.99435 * 68.41297 * 7 4 2 9 9 C 1.54190 * 111.97704 * 192.46511 * 8 7 4 10 10 O 1.39977 * 113.29654 * 318.69339 * 9 8 7 11 11 C 1.44600 * 112.92569 * 94.36172 * 10 9 8 12 12 C 1.46311 * 111.22832 * 280.80154 * 11 10 9 13 13 C 1.54657 * 112.39868 * 297.02696 * 12 11 10 14 14 C 1.51263 * 104.21255 * 214.56698 * 13 12 11 15 15 O 1.21278 * 124.93525 * 196.09520 * 14 13 12 16 16 N 1.34407 * 110.12883 * 16.11109 * 14 13 12 17 17 C 1.46500 * 124.34735 * 180.38243 * 16 14 13 18 18 C 1.53002 * 109.46701 * 90.02970 * 17 16 14 19 19 C 1.50704 * 109.46667 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00617 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99445 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00609 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99667 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46946 * 179.97438 * 23 21 19 25 25 H 1.48499 * 109.47154 * 60.00144 * 23 21 19 26 26 H 1.48496 * 109.47330 * 300.00145 * 23 21 19 27 27 C 1.46772 * 111.31070 * 0.65797 * 16 14 13 28 28 C 1.44073 * 110.99975 * 300.28951 * 7 4 2 29 29 H 1.08994 * 109.47273 * 270.00102 * 1 2 3 30 30 H 1.09007 * 109.46978 * 30.00347 * 1 2 3 31 31 H 1.09000 * 109.47201 * 149.99770 * 1 2 3 32 32 H 1.09004 * 109.47571 * 300.00193 * 6 4 2 33 33 H 1.09002 * 109.47411 * 60.00378 * 6 4 2 34 34 H 1.09006 * 109.47224 * 180.02562 * 6 4 2 35 35 H 1.09001 * 108.97806 * 71.82683 * 8 7 4 36 36 H 1.08992 * 108.98339 * 313.11382 * 8 7 4 37 37 H 1.09003 * 108.71667 * 197.70260 * 9 8 7 38 38 H 1.09004 * 108.61662 * 79.60993 * 9 8 7 39 39 H 1.08998 * 109.12899 * 160.35095 * 11 10 9 40 40 H 1.09000 * 109.07793 * 41.22158 * 11 10 9 41 41 H 1.09004 * 110.47946 * 95.88176 * 13 12 11 42 42 H 1.08994 * 110.59576 * 333.30500 * 13 12 11 43 43 H 1.09002 * 109.47097 * 330.03341 * 17 16 14 44 44 H 1.08998 * 109.47284 * 210.02836 * 17 16 14 45 45 H 1.08993 * 109.47208 * 60.00334 * 18 17 16 46 46 H 1.08998 * 109.47143 * 299.99953 * 18 17 16 47 47 H 0.97002 * 119.99516 * 0.02562 * 22 21 19 48 48 H 1.08996 * 110.23966 * 101.86230 * 27 16 14 49 49 H 1.08999 * 110.23856 * 223.84662 * 27 16 14 50 50 H 1.09003 * 109.73190 * 99.86958 * 28 7 4 51 51 H 1.08997 * 109.72938 * 339.18551 * 28 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2604 -1.3051 0.0006 5 1 1.7532 -2.0173 0.6513 6 6 2.3141 -1.8635 -1.4228 7 7 3.6271 -1.0813 0.4906 8 6 3.6244 -0.7319 1.9336 9 6 4.9925 -0.1952 2.4000 10 8 6.0760 -0.9018 1.8649 11 6 6.6044 -0.2968 0.6625 12 6 5.7796 -0.6227 -0.5011 13 6 5.7582 -2.1396 -0.8021 14 6 5.6866 -2.2179 -2.3110 15 8 5.3762 -3.2065 -2.9412 16 7 6.0173 -1.0327 -2.8518 17 6 6.0430 -0.7592 -4.2909 18 6 4.6701 -0.2532 -4.7382 19 6 4.6962 0.0276 -6.2187 20 1 5.6015 -0.1378 -6.7838 21 6 3.5646 0.4966 -6.8514 22 7 2.4622 0.6985 -6.1632 23 14 3.5972 0.8454 -8.6863 24 1 2.2646 1.3363 -9.1206 25 1 3.9283 -0.4017 -9.4214 26 1 4.6242 1.8781 -8.9758 27 6 6.3559 -0.0495 -1.8160 28 6 4.3268 -0.1379 -0.3438 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.3001 -2.0296 -1.7866 33 1 2.8215 -1.1514 -2.0737 34 1 2.8588 -2.8078 -1.4224 35 1 3.3760 -1.6210 2.5131 36 1 2.8652 0.0294 2.1125 37 1 5.0391 -0.2542 3.4874 38 1 5.0758 0.8503 2.1032 39 1 7.6180 -0.6610 0.4952 40 1 6.6305 0.7854 0.7901 41 1 4.8803 -2.6049 -0.3538 42 1 6.6687 -2.6155 -0.4382 43 1 6.2864 -1.6745 -4.8304 44 1 6.7965 -0.0008 -4.5032 45 1 4.4266 0.6620 -4.1987 46 1 3.9165 -1.0116 -4.5259 47 1 2.4454 0.5178 -5.2103 48 1 7.4376 0.0608 -1.7400 49 1 5.8931 0.9111 -2.0422 50 1 4.3160 0.8463 0.1244 51 1 3.8483 -0.0861 -1.3218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273982173.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:21 Heat of formation + Delta-G solvation = -121.143710 kcal Electronic energy + Delta-G solvation = -32751.397105 eV Core-core repulsion = 28650.493139 eV Total energy + Delta-G solvation = -4100.903966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.51598 -41.07553 -39.72880 -37.59666 -37.22544 -36.30367 -34.55121 -33.22159 -31.69500 -30.69686 -29.41206 -28.76959 -27.72748 -26.91931 -25.68141 -24.33856 -23.61897 -22.30887 -21.02320 -20.52942 -20.09788 -19.06840 -18.14836 -17.83240 -17.52323 -17.08167 -16.68503 -16.66481 -16.34841 -16.16220 -15.70581 -15.64345 -15.30851 -15.13558 -15.07840 -14.79124 -14.68058 -14.45881 -14.20371 -13.86936 -13.75137 -13.60749 -13.45367 -13.31086 -13.13521 -12.93211 -12.82348 -12.72238 -12.49396 -12.39248 -12.15551 -12.05313 -11.95487 -11.85100 -11.74735 -11.60020 -11.09501 -10.99222 -10.72868 -10.61140 -10.53295 -9.66239 -9.13561 -8.76861 -6.47831 0.80218 1.49006 1.58455 1.61050 1.77453 2.07453 2.51440 2.54909 2.90221 2.96212 3.09768 3.40971 3.53519 3.59389 3.73820 3.88101 3.99629 4.01820 4.10979 4.14185 4.20253 4.25472 4.33707 4.41052 4.42597 4.47499 4.53153 4.55118 4.57814 4.58997 4.64007 4.67550 4.73141 4.74431 4.78193 4.84260 4.95559 5.04792 5.07032 5.10950 5.13246 5.16991 5.26990 5.53046 5.81728 5.91087 6.03134 6.08339 6.24491 6.29802 6.41872 6.45544 7.19759 7.35987 8.63079 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.004238 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.274132 B = 6605.648768 C = 7943.710867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.326 3.674 3 O -0.492 6.492 4 C 0.043 3.957 5 H 0.147 0.853 6 C -0.135 4.135 7 N -0.527 5.527 8 C 0.029 3.971 9 C 0.059 3.941 10 O -0.362 6.362 11 C 0.082 3.918 12 C -0.088 4.088 13 C -0.117 4.117 14 C 0.503 3.497 15 O -0.590 6.590 16 N -0.618 5.618 17 C 0.148 3.852 18 C 0.016 3.984 19 C -0.620 4.620 20 H 0.058 0.942 21 C -0.036 4.036 22 N -0.932 5.932 23 Si 1.120 2.880 24 H -0.283 1.283 25 H -0.270 1.270 26 H -0.262 1.262 27 C 0.109 3.891 28 C 0.082 3.918 29 H 0.124 0.876 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.021 0.979 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.040 0.960 37 H 0.113 0.887 38 H 0.046 0.954 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.054 0.946 44 H 0.088 0.912 45 H -0.013 1.013 46 H -0.029 1.029 47 H 0.250 0.750 48 H 0.107 0.893 49 H 0.067 0.933 50 H 0.051 0.949 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.023 -1.227 22.317 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.202 3.798 3 O -0.369 6.369 4 C -0.066 4.066 5 H 0.165 0.835 6 C -0.193 4.193 7 N -0.250 5.250 8 C -0.098 4.098 9 C -0.019 4.019 10 O -0.279 6.279 11 C 0.006 3.994 12 C -0.090 4.090 13 C -0.156 4.156 14 C 0.293 3.707 15 O -0.471 6.471 16 N -0.350 5.350 17 C 0.026 3.974 18 C -0.022 4.022 19 C -0.658 4.658 20 H 0.076 0.924 21 C -0.234 4.234 22 N -0.569 5.569 23 Si 0.940 3.060 24 H -0.208 1.208 25 H -0.196 1.196 26 H -0.187 1.187 27 C -0.013 4.013 28 C -0.047 4.047 29 H 0.142 0.858 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.058 0.942 37 H 0.130 0.870 38 H 0.064 0.936 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.006 0.994 46 H -0.011 1.011 47 H 0.059 0.941 48 H 0.125 0.875 49 H 0.086 0.914 50 H 0.070 0.930 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.622 -1.205 20.735 20.935 hybrid contribution -0.214 0.509 0.632 0.840 sum 2.407 -0.696 21.367 21.514 Atomic orbital electron populations 1.22365 0.92094 1.05406 1.06190 1.26247 0.94259 0.90991 0.68271 1.90404 1.72718 1.36452 1.37280 1.22444 0.89445 0.96057 0.98651 0.83510 1.21751 1.02929 1.00965 0.93640 1.60838 1.13266 1.47747 1.03113 1.23332 0.98543 1.01210 0.86718 1.22431 0.85239 0.94602 0.99587 1.87822 1.46720 1.53411 1.39968 1.21549 0.96990 0.98490 0.82414 1.21165 0.96792 0.95441 0.95575 1.22376 1.06939 0.97156 0.89169 1.21824 0.74633 0.81876 0.92352 1.90646 1.50815 1.35700 1.69970 1.48562 1.66829 1.12905 1.06674 1.21195 0.97895 1.00040 0.78264 1.19295 0.93545 0.93262 0.96076 1.22367 1.00570 1.48400 0.94488 0.92392 1.27534 0.91721 0.93037 1.11087 1.70926 1.29489 1.47438 1.09071 0.82919 0.76628 0.77701 0.68739 1.20814 1.19563 1.18716 1.22274 1.01769 0.91762 0.85545 1.21688 0.92688 0.93758 0.96586 0.85799 0.90935 0.87759 0.90095 0.95955 0.91178 0.88287 0.94202 0.86954 0.93592 0.86448 0.90863 0.85973 0.86752 0.92709 0.89416 0.99432 1.01097 0.94074 0.87521 0.91411 0.93038 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.49 10.25 71.23 0.73 -2.76 16 2 C 0.33 7.93 5.37 29.10 0.16 8.08 16 3 O -0.49 -15.71 13.92 -1.46 -0.02 -15.73 16 4 C 0.04 0.97 2.65 44.17 0.12 1.09 16 5 H 0.15 2.20 8.10 -2.39 -0.02 2.18 16 6 C -0.14 -4.05 8.96 71.98 0.65 -3.40 16 7 N -0.53 -12.10 2.26 -874.03 -1.98 -14.08 16 8 C 0.03 0.50 5.64 86.40 0.49 0.98 16 9 C 0.06 0.93 6.06 72.39 0.44 1.36 16 10 O -0.36 -6.63 10.33 -140.51 -1.45 -8.08 16 11 C 0.08 1.40 4.90 69.92 0.34 1.74 16 12 C -0.09 -2.10 0.63 -52.82 -0.03 -2.13 16 13 C -0.12 -3.24 5.57 30.59 0.17 -3.07 16 14 C 0.50 19.51 7.98 87.89 0.70 20.22 16 15 O -0.59 -28.58 17.59 -3.02 -0.05 -28.63 16 16 N -0.62 -23.18 2.93 -817.81 -2.40 -25.58 16 17 C 0.15 6.62 5.87 86.38 0.51 7.13 16 18 C 0.02 0.90 4.61 29.85 0.14 1.04 16 19 C -0.62 -36.73 9.11 25.60 0.23 -36.50 16 20 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 21 C -0.04 -2.18 5.46 84.66 0.46 -1.71 16 22 N -0.93 -59.92 13.65 21.45 0.29 -59.63 16 23 Si 1.12 51.39 29.90 68.60 2.05 53.44 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 27 C 0.11 2.99 6.24 86.86 0.54 3.54 16 28 C 0.08 2.27 2.28 87.15 0.20 2.47 16 29 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.10 1.45 8.06 -2.39 -0.02 1.44 16 32 H 0.08 2.13 8.08 -2.39 -0.02 2.11 16 33 H 0.02 0.86 6.05 -2.39 -0.01 0.85 16 34 H 0.07 2.22 7.75 -2.38 -0.02 2.20 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 36 H 0.04 0.72 6.68 -2.39 -0.02 0.70 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 0.75 6.57 -2.38 -0.02 0.73 16 39 H 0.12 1.55 8.12 -2.39 -0.02 1.53 16 40 H 0.07 1.07 7.48 -2.39 -0.02 1.05 16 41 H 0.12 3.54 5.89 -2.38 -0.01 3.53 16 42 H 0.11 2.70 7.95 -2.39 -0.02 2.68 16 43 H 0.05 2.63 7.92 -2.39 -0.02 2.61 16 44 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 45 H -0.01 -0.73 8.01 -2.39 -0.02 -0.75 16 46 H -0.03 -1.85 8.01 -2.39 -0.02 -1.86 16 47 H 0.25 16.54 7.22 -92.71 -0.67 15.87 16 48 H 0.11 2.16 7.94 -2.39 -0.02 2.14 16 49 H 0.07 2.02 7.87 -2.39 -0.02 2.00 16 50 H 0.05 1.48 5.90 -2.39 -0.01 1.46 16 51 H 0.04 1.61 4.94 -2.39 -0.01 1.60 16 Total: -1.00 -82.73 390.51 3.30 -79.43 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 1.02 Total: 20.78 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 5.84 Total: -1.93 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -4.08 Total: -99.29 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -1.53 Total: -52.44 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.44 kcal Total: -82.73 3.30 -79.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273982173.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.710 kcal (2) G-P(sol) polarization free energy of solvation -82.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds