Wall clock time and date at job start Tue Mar 31 2020 21:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20759 * 119.99735 * 2 1 4 4 C 1.50698 * 120.00228 * 180.02562 * 2 1 3 5 5 H 1.09003 * 109.46793 * 44.60791 * 4 2 1 6 6 C 1.53001 * 109.46854 * 284.61323 * 4 2 1 7 7 N 1.46899 * 109.47091 * 164.61353 * 4 2 1 8 8 C 1.40419 * 110.99940 * 73.13760 * 7 4 2 9 9 C 1.54106 * 111.98797 * 188.28828 * 8 7 4 10 10 O 1.40636 * 109.11755 * 282.11340 * 9 8 7 11 11 C 1.44065 * 116.43283 * 93.89738 * 10 9 8 12 12 C 1.53442 * 112.37889 * 318.29690 * 11 10 9 13 13 C 1.54151 * 109.52411 * 82.43623 * 12 11 10 14 14 C 1.51398 * 104.08717 * 91.96218 * 13 12 11 15 15 O 1.21283 * 124.94220 * 195.95430 * 14 13 12 16 16 N 1.34471 * 110.11044 * 15.95787 * 14 13 12 17 17 C 1.46499 * 124.34990 * 180.27286 * 16 14 13 18 18 C 1.53001 * 109.46759 * 269.97256 * 17 16 14 19 19 C 1.50703 * 109.46848 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00162 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99842 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99949 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47408 * 89.99620 * 23 21 19 25 25 H 1.48499 * 109.46836 * 210.00097 * 23 21 19 26 26 H 1.48501 * 109.47085 * 329.99778 * 23 21 19 27 27 C 1.46875 * 111.30148 * 0.24712 * 16 14 13 28 28 C 1.48047 * 110.99623 * 201.30126 * 7 4 2 29 29 H 1.09003 * 109.47236 * 240.00053 * 1 2 3 30 30 H 1.09001 * 109.47175 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.46804 * 119.99777 * 1 2 3 32 32 H 1.09003 * 109.47264 * 300.00080 * 6 4 2 33 33 H 1.09000 * 109.46919 * 60.00005 * 6 4 2 34 34 H 1.08998 * 109.46785 * 179.97438 * 6 4 2 35 35 H 1.08999 * 108.97789 * 308.93220 * 8 7 4 36 36 H 1.08999 * 108.97847 * 67.72705 * 8 7 4 37 37 H 1.09005 * 109.53102 * 42.00074 * 9 8 7 38 38 H 1.08999 * 109.52941 * 162.22278 * 9 8 7 39 39 H 1.08997 * 108.89738 * 79.04202 * 11 10 9 40 40 H 1.08998 * 108.90480 * 197.64471 * 11 10 9 41 41 H 1.09004 * 110.50343 * 210.60871 * 13 12 11 42 42 H 1.08996 * 110.50934 * 333.30833 * 13 12 11 43 43 H 1.08996 * 109.47239 * 29.97390 * 17 16 14 44 44 H 1.09005 * 109.47237 * 149.97248 * 17 16 14 45 45 H 1.08997 * 109.47099 * 299.99577 * 18 17 16 46 46 H 1.08996 * 109.47190 * 60.00134 * 18 17 16 47 47 H 0.97006 * 119.99818 * 180.02562 * 22 21 19 48 48 H 1.09002 * 110.26369 * 224.55017 * 27 16 14 49 49 H 1.08999 * 110.34193 * 102.55245 * 27 16 14 50 50 H 1.08995 * 109.61777 * 274.35761 * 28 7 4 51 51 H 1.08997 * 109.61775 * 34.89517 * 28 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.8086 -1.9852 -0.7226 6 6 2.2004 -1.9293 1.3950 7 7 3.6618 -1.0612 -0.3679 8 6 4.3566 -0.4402 0.6824 9 6 5.7666 0.0111 0.2543 10 8 6.6213 -1.1056 0.2340 11 6 6.7712 -1.7755 -1.0326 12 6 5.4391 -1.9144 -1.7813 13 6 5.1314 -0.6040 -2.5328 14 6 5.7296 -0.8181 -3.9070 15 8 5.9495 0.0606 -4.7135 16 7 5.9817 -2.1244 -4.1031 17 6 6.5679 -2.6786 -5.3260 18 6 5.4516 -3.0435 -6.3065 19 6 6.0546 -3.6131 -7.5648 20 1 7.1267 -3.7059 -7.6557 21 6 5.2374 -4.0157 -8.5998 22 7 3.9319 -3.9023 -8.4892 23 14 5.9848 -4.7224 -10.1592 24 1 6.1180 -6.1948 -10.0211 25 1 5.1055 -4.4109 -11.3146 26 1 7.3251 -4.1229 -10.3814 27 6 5.5944 -2.9240 -2.9336 28 6 4.3011 -2.2980 -0.8714 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 2.6522 -1.2491 2.1171 33 1 1.1606 -2.1101 1.6675 34 1 2.7450 -2.8734 1.3945 35 1 3.7916 0.4305 1.0153 36 1 4.4469 -1.1420 1.5115 37 1 5.7211 0.4532 -0.7411 38 1 6.1449 0.7467 0.9641 39 1 7.4667 -1.2087 -1.6515 40 1 7.1827 -2.7699 -0.8596 41 1 4.0549 -0.4490 -2.6049 42 1 5.6075 0.2416 -2.0365 43 1 7.2245 -1.9378 -5.7822 44 1 7.1427 -3.5718 -5.0809 45 1 4.7950 -3.7844 -5.8503 46 1 4.8768 -2.1504 -6.5515 47 1 3.3570 -4.1859 -9.2173 48 1 6.3731 -3.6493 -2.6975 49 1 4.6488 -3.4334 -3.1191 50 1 4.6834 -2.8799 -0.0328 51 1 3.5714 -2.8873 -1.4266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273982177.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:27 Heat of formation + Delta-G solvation = -85.016320 kcal Electronic energy + Delta-G solvation = -31522.260452 eV Core-core repulsion = 27422.923087 eV Total energy + Delta-G solvation = -4099.337364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.46206 -40.03915 -38.62452 -36.78015 -36.09820 -34.27256 -32.69047 -32.19334 -30.32446 -29.73793 -28.61565 -27.66026 -26.65348 -25.64510 -24.67439 -23.60676 -21.77297 -21.22885 -19.66631 -19.52828 -18.79223 -17.26044 -16.83165 -16.57458 -16.39932 -15.78688 -15.56712 -15.30521 -15.15771 -15.09467 -14.84613 -14.73867 -14.42225 -14.21791 -13.95643 -13.29626 -13.15830 -12.98797 -12.88965 -12.71349 -12.61241 -12.57831 -12.44183 -12.28532 -12.13662 -12.01809 -11.73210 -11.39334 -11.28975 -11.27502 -10.98896 -10.91437 -10.69956 -10.19069 -9.99187 -9.92334 -9.80476 -9.58164 -9.33004 -9.06116 -8.43537 -8.37654 -8.01043 -6.02791 -4.06110 1.72004 3.11384 3.20604 3.30835 3.37302 3.41041 3.57835 3.68004 3.89314 4.29957 4.39437 4.45301 4.48941 4.56980 4.64915 4.76476 4.83624 4.91343 4.97003 5.03143 5.07033 5.10355 5.18706 5.25026 5.29729 5.33517 5.35558 5.41665 5.53139 5.58203 5.60821 5.65865 5.71388 5.72035 5.83465 5.85068 5.99932 6.05676 6.21823 6.47081 6.68454 6.81543 6.98110 7.01536 7.21181 7.31062 7.52582 7.67548 7.86428 7.97408 8.33787 8.73089 9.00751 9.57947 11.08614 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.002916 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.725486 B = 9598.441961 C =10503.036010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.360 3.640 3 O -0.438 6.438 4 C 0.036 3.964 5 H 0.113 0.887 6 C -0.177 4.177 7 N -0.534 5.534 8 C 0.035 3.965 9 C 0.046 3.954 10 O -0.385 6.385 11 C 0.076 3.924 12 C -0.105 4.105 13 C -0.135 4.135 14 C 0.507 3.493 15 O -0.536 6.536 16 N -0.612 5.612 17 C 0.128 3.872 18 C 0.012 3.988 19 C -0.522 4.522 20 H 0.057 0.943 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.895 3.105 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C 0.119 3.881 28 C 0.081 3.919 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.033 0.967 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.016 0.984 46 H 0.021 0.979 47 H 0.261 0.739 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.055 0.945 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.909 2.281 25.073 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.233 3.767 3 O -0.310 6.310 4 C -0.073 4.073 5 H 0.130 0.870 6 C -0.236 4.236 7 N -0.257 5.257 8 C -0.095 4.095 9 C -0.031 4.031 10 O -0.303 6.303 11 C 0.000 4.000 12 C -0.107 4.107 13 C -0.175 4.175 14 C 0.294 3.706 15 O -0.413 6.413 16 N -0.346 5.346 17 C 0.008 3.992 18 C -0.026 4.026 19 C -0.561 4.561 20 H 0.075 0.925 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.005 4.005 28 C -0.046 4.046 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.133 0.867 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.035 0.965 46 H 0.039 0.961 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.073 0.927 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.455 3.500 24.273 24.925 hybrid contribution -0.037 -1.153 -0.565 1.284 sum -4.492 2.347 23.708 24.243 Atomic orbital electron populations 1.22325 0.94147 1.05120 1.04551 1.24577 0.91639 0.89879 0.70605 1.90381 1.71619 1.34758 1.34243 1.22221 0.90133 0.96849 0.98127 0.86962 1.22321 1.03199 1.01679 0.96357 1.59231 1.00871 1.26834 1.38777 1.21803 0.95904 0.99602 0.92146 1.22896 0.88532 0.88454 1.03237 1.87522 1.66441 1.44501 1.31880 1.22970 0.94435 0.97895 0.84747 1.21693 0.96222 0.97069 0.95669 1.22717 1.04542 0.97221 0.93013 1.21014 0.77909 0.82646 0.89026 1.90706 1.53983 1.46164 1.50408 1.48573 1.62119 1.07239 1.16652 1.21797 0.97457 0.97337 0.82605 1.19399 0.93381 0.96954 0.92839 1.21096 0.93146 1.41609 1.00247 0.92496 1.24999 0.94810 0.95813 0.98634 1.69973 1.02905 1.47523 1.32769 0.86553 0.79190 0.79218 0.82807 1.20646 1.21179 1.19782 1.21995 1.01519 0.93151 0.83828 1.21812 0.95232 0.90004 0.97556 0.89138 0.89882 0.88719 0.91610 0.91276 0.91217 0.88816 0.94943 0.90085 0.89391 0.92461 0.88903 0.86672 0.87985 0.91146 0.91719 0.96532 0.96094 0.92957 0.90404 0.90599 0.92680 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.09 10.25 36.01 0.37 -0.72 16 2 C 0.36 3.01 6.37 -29.04 -0.19 2.82 16 3 O -0.44 -5.32 15.07 6.00 0.09 -5.23 16 4 C 0.04 0.26 2.62 -68.87 -0.18 0.08 16 5 H 0.11 0.67 7.53 -51.93 -0.39 0.28 16 6 C -0.18 -0.96 8.27 37.16 0.31 -0.65 16 7 N -0.53 -4.95 2.37 -232.87 -0.55 -5.50 16 8 C 0.03 0.33 3.81 -6.60 -0.03 0.30 16 9 C 0.05 0.47 6.38 37.74 0.24 0.71 16 10 O -0.38 -4.34 10.19 -34.29 -0.35 -4.69 16 11 C 0.08 0.81 5.65 37.39 0.21 1.03 16 12 C -0.11 -1.16 0.60 -154.33 -0.09 -1.25 16 13 C -0.14 -1.90 4.47 -26.94 -0.12 -2.02 16 14 C 0.51 9.66 7.98 -10.78 -0.09 9.57 16 15 O -0.54 -12.75 17.60 5.56 0.10 -12.66 16 16 N -0.61 -10.96 2.94 -172.57 -0.51 -11.46 16 17 C 0.13 2.70 5.87 -4.04 -0.02 2.68 16 18 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 19 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 23 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.12 1.53 6.41 -3.32 -0.02 1.51 16 28 C 0.08 0.72 4.34 -4.36 -0.02 0.70 16 29 H 0.09 0.29 7.92 -51.93 -0.41 -0.12 16 30 H 0.08 0.50 8.12 -51.93 -0.42 0.07 16 31 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 6.53 -51.93 -0.34 0.07 16 33 H 0.07 0.26 7.92 -51.93 -0.41 -0.15 16 34 H 0.07 0.38 7.94 -51.93 -0.41 -0.03 16 35 H 0.09 0.97 5.74 -51.93 -0.30 0.67 16 36 H 0.03 0.30 6.54 -51.93 -0.34 -0.04 16 37 H 0.08 0.93 3.98 -51.93 -0.21 0.73 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.69 7.90 -51.93 -0.41 0.28 16 40 H 0.09 0.86 7.76 -51.93 -0.40 0.46 16 41 H 0.12 1.67 7.26 -51.93 -0.38 1.29 16 42 H 0.10 1.40 4.71 -51.93 -0.24 1.16 16 43 H 0.07 1.59 7.93 -51.93 -0.41 1.18 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.08 0.85 7.62 -51.93 -0.40 0.46 16 49 H 0.08 0.96 7.42 -51.93 -0.39 0.58 16 50 H 0.05 0.47 7.72 -51.93 -0.40 0.06 16 51 H 0.09 0.70 6.74 -51.93 -0.35 0.35 16 LS Contribution 389.21 15.07 5.87 5.87 Total: -1.00 -35.68 389.21 -8.09 -43.76 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.26 Total: -1.96 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.18 Total: 1.41 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.32 Total: -43.21 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.16 Total: -22.58 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.68 -8.09 -43.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273982177.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.254 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds