Wall clock time and date at job start Tue Mar 31 2020 21:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20759 * 119.99735 * 2 1 4 4 C 1.50698 * 120.00228 * 180.02562 * 2 1 3 5 5 H 1.09003 * 109.46793 * 44.60791 * 4 2 1 6 6 C 1.53001 * 109.46854 * 284.61323 * 4 2 1 7 7 N 1.46899 * 109.47091 * 164.61353 * 4 2 1 8 8 C 1.40419 * 110.99940 * 73.13760 * 7 4 2 9 9 C 1.54106 * 111.98797 * 188.28828 * 8 7 4 10 10 O 1.40636 * 109.11755 * 282.11340 * 9 8 7 11 11 C 1.44065 * 116.43283 * 93.89738 * 10 9 8 12 12 C 1.53442 * 112.37889 * 318.29690 * 11 10 9 13 13 C 1.54151 * 109.52411 * 82.43623 * 12 11 10 14 14 C 1.51398 * 104.08717 * 91.96218 * 13 12 11 15 15 O 1.21283 * 124.94220 * 195.95430 * 14 13 12 16 16 N 1.34471 * 110.11044 * 15.95787 * 14 13 12 17 17 C 1.46499 * 124.34990 * 180.27286 * 16 14 13 18 18 C 1.53001 * 109.46759 * 269.97256 * 17 16 14 19 19 C 1.50703 * 109.46848 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00162 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99842 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99949 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47408 * 89.99620 * 23 21 19 25 25 H 1.48499 * 109.46836 * 210.00097 * 23 21 19 26 26 H 1.48501 * 109.47085 * 329.99778 * 23 21 19 27 27 C 1.46875 * 111.30148 * 0.24712 * 16 14 13 28 28 C 1.48047 * 110.99623 * 201.30126 * 7 4 2 29 29 H 1.09003 * 109.47236 * 240.00053 * 1 2 3 30 30 H 1.09001 * 109.47175 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.46804 * 119.99777 * 1 2 3 32 32 H 1.09003 * 109.47264 * 300.00080 * 6 4 2 33 33 H 1.09000 * 109.46919 * 60.00005 * 6 4 2 34 34 H 1.08998 * 109.46785 * 179.97438 * 6 4 2 35 35 H 1.08999 * 108.97789 * 308.93220 * 8 7 4 36 36 H 1.08999 * 108.97847 * 67.72705 * 8 7 4 37 37 H 1.09005 * 109.53102 * 42.00074 * 9 8 7 38 38 H 1.08999 * 109.52941 * 162.22278 * 9 8 7 39 39 H 1.08997 * 108.89738 * 79.04202 * 11 10 9 40 40 H 1.08998 * 108.90480 * 197.64471 * 11 10 9 41 41 H 1.09004 * 110.50343 * 210.60871 * 13 12 11 42 42 H 1.08996 * 110.50934 * 333.30833 * 13 12 11 43 43 H 1.08996 * 109.47239 * 29.97390 * 17 16 14 44 44 H 1.09005 * 109.47237 * 149.97248 * 17 16 14 45 45 H 1.08997 * 109.47099 * 299.99577 * 18 17 16 46 46 H 1.08996 * 109.47190 * 60.00134 * 18 17 16 47 47 H 0.97006 * 119.99818 * 180.02562 * 22 21 19 48 48 H 1.09002 * 110.26369 * 224.55017 * 27 16 14 49 49 H 1.08999 * 110.34193 * 102.55245 * 27 16 14 50 50 H 1.08995 * 109.61777 * 274.35761 * 28 7 4 51 51 H 1.08997 * 109.61775 * 34.89517 * 28 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.8086 -1.9852 -0.7226 6 6 2.2004 -1.9293 1.3950 7 7 3.6618 -1.0612 -0.3679 8 6 4.3566 -0.4402 0.6824 9 6 5.7666 0.0111 0.2543 10 8 6.6213 -1.1056 0.2340 11 6 6.7712 -1.7755 -1.0326 12 6 5.4391 -1.9144 -1.7813 13 6 5.1314 -0.6040 -2.5328 14 6 5.7296 -0.8181 -3.9070 15 8 5.9495 0.0606 -4.7135 16 7 5.9817 -2.1244 -4.1031 17 6 6.5679 -2.6786 -5.3260 18 6 5.4516 -3.0435 -6.3065 19 6 6.0546 -3.6131 -7.5648 20 1 7.1267 -3.7059 -7.6557 21 6 5.2374 -4.0157 -8.5998 22 7 3.9319 -3.9023 -8.4892 23 14 5.9848 -4.7224 -10.1592 24 1 6.1180 -6.1948 -10.0211 25 1 5.1055 -4.4109 -11.3146 26 1 7.3251 -4.1229 -10.3814 27 6 5.5944 -2.9240 -2.9336 28 6 4.3011 -2.2980 -0.8714 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 2.6522 -1.2491 2.1171 33 1 1.1606 -2.1101 1.6675 34 1 2.7450 -2.8734 1.3945 35 1 3.7916 0.4305 1.0153 36 1 4.4469 -1.1420 1.5115 37 1 5.7211 0.4532 -0.7411 38 1 6.1449 0.7467 0.9641 39 1 7.4667 -1.2087 -1.6515 40 1 7.1827 -2.7699 -0.8596 41 1 4.0549 -0.4490 -2.6049 42 1 5.6075 0.2416 -2.0365 43 1 7.2245 -1.9378 -5.7822 44 1 7.1427 -3.5718 -5.0809 45 1 4.7950 -3.7844 -5.8503 46 1 4.8768 -2.1504 -6.5515 47 1 3.3570 -4.1859 -9.2173 48 1 6.3731 -3.6493 -2.6975 49 1 4.6488 -3.4334 -3.1191 50 1 4.6834 -2.8799 -0.0328 51 1 3.5714 -2.8873 -1.4266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273982177.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:26 Heat of formation + Delta-G solvation = -109.428664 kcal Electronic energy + Delta-G solvation = -31523.319051 eV Core-core repulsion = 27422.923087 eV Total energy + Delta-G solvation = -4100.395963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.44323 -40.96857 -39.68735 -37.54431 -37.52604 -35.98494 -34.41714 -32.88934 -31.80065 -30.51259 -29.74253 -28.64656 -27.47131 -27.08799 -25.83434 -24.62762 -23.27729 -22.39636 -20.64132 -20.58194 -19.82726 -18.66220 -18.16060 -17.71655 -17.24113 -16.87762 -16.71916 -16.56620 -16.33583 -16.17878 -15.99387 -15.86045 -15.51863 -14.87035 -14.81376 -14.66812 -14.54110 -14.26308 -14.11512 -13.92506 -13.60939 -13.47749 -13.30776 -13.19172 -13.06375 -12.98140 -12.85758 -12.70626 -12.58931 -12.34942 -12.19333 -12.13793 -11.94429 -11.84615 -11.77386 -11.42049 -11.18344 -10.72343 -10.61465 -10.57687 -10.31375 -9.58448 -9.10114 -8.23445 -6.35912 1.10541 1.39234 1.41848 1.52468 1.59094 2.09200 2.41381 2.62285 2.80102 3.10267 3.25989 3.36751 3.43629 3.48907 3.88035 3.96497 4.06516 4.15003 4.17717 4.19785 4.30871 4.33372 4.45388 4.49125 4.54627 4.59603 4.61469 4.66706 4.71287 4.73888 4.76685 4.81005 4.83361 4.90288 4.91992 4.94583 4.99817 5.07588 5.12686 5.19192 5.29381 5.33187 5.46607 5.59770 5.82483 6.03540 6.15683 6.24800 6.27294 6.42389 6.70784 6.79346 7.20045 7.33892 8.88659 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.002916 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.725486 B = 9598.441961 C =10503.036010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.357 3.643 3 O -0.486 6.486 4 C 0.034 3.966 5 H 0.129 0.871 6 C -0.170 4.170 7 N -0.553 5.553 8 C 0.046 3.954 9 C 0.043 3.957 10 O -0.388 6.388 11 C 0.077 3.923 12 C -0.087 4.087 13 C -0.119 4.119 14 C 0.492 3.508 15 O -0.596 6.596 16 N -0.614 5.614 17 C 0.142 3.858 18 C 0.024 3.976 19 C -0.545 4.545 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.932 5.932 23 Si 0.969 3.031 24 H -0.264 1.264 25 H -0.285 1.285 26 H -0.265 1.265 27 C 0.114 3.886 28 C 0.085 3.915 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.040 0.960 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.049 0.951 44 H 0.096 0.904 45 H 0.005 0.995 46 H -0.030 1.030 47 H 0.264 0.736 48 H 0.108 0.892 49 H 0.083 0.917 50 H 0.071 0.929 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.946 -0.285 26.676 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.234 3.766 3 O -0.361 6.361 4 C -0.075 4.075 5 H 0.147 0.853 6 C -0.228 4.228 7 N -0.276 5.276 8 C -0.083 4.083 9 C -0.034 4.034 10 O -0.307 6.307 11 C 0.001 3.999 12 C -0.088 4.088 13 C -0.158 4.158 14 C 0.282 3.718 15 O -0.478 6.478 16 N -0.345 5.345 17 C 0.020 3.980 18 C -0.014 4.014 19 C -0.584 4.584 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.571 5.571 23 Si 0.793 3.207 24 H -0.189 1.189 25 H -0.210 1.210 26 H -0.190 1.190 27 C -0.009 4.009 28 C -0.042 4.042 29 H 0.136 0.864 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.058 0.942 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.068 0.932 44 H 0.114 0.886 45 H 0.023 0.977 46 H -0.011 1.011 47 H 0.073 0.927 48 H 0.126 0.874 49 H 0.102 0.898 50 H 0.089 0.911 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.506 0.888 25.932 26.335 hybrid contribution -0.079 -0.322 -1.050 1.101 sum -4.586 0.566 24.882 25.307 Atomic orbital electron populations 1.22346 0.91869 1.05135 1.06417 1.25187 0.93068 0.89673 0.68693 1.90378 1.72707 1.36305 1.36718 1.22350 0.88691 0.96600 0.99829 0.85301 1.22269 1.04667 1.01298 0.94578 1.59129 1.02024 1.27225 1.39203 1.21634 0.94945 0.99387 0.92360 1.22953 0.89338 0.88522 1.02575 1.87521 1.66673 1.44612 1.31902 1.22999 0.93716 0.98796 0.84377 1.21653 0.97631 0.94293 0.95219 1.22631 1.03642 0.99388 0.90187 1.21954 0.77138 0.82421 0.90320 1.90655 1.56461 1.47961 1.52686 1.48638 1.61241 1.07660 1.16998 1.21392 0.95533 0.97952 0.83091 1.19209 0.94144 0.94139 0.93893 1.21552 0.93798 1.41691 1.01319 0.91590 1.25995 0.95203 0.96047 1.02424 1.70111 1.04485 1.48460 1.34079 0.85388 0.78347 0.79055 0.77901 1.18924 1.21034 1.18972 1.22353 1.02882 0.93465 0.82168 1.21806 0.94651 0.90080 0.97633 0.86378 0.90899 0.87434 0.92592 0.89136 0.90654 0.89870 0.94157 0.91723 0.88483 0.94176 0.86448 0.86996 0.87718 0.93236 0.88594 0.97653 1.01144 0.92708 0.87365 0.89848 0.91051 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.78 10.25 71.24 0.73 -1.05 16 2 C 0.36 5.60 6.37 29.10 0.19 5.79 16 3 O -0.49 -11.97 15.07 -1.45 -0.02 -11.99 16 4 C 0.03 0.41 2.62 44.17 0.12 0.52 16 5 H 0.13 1.15 7.53 -2.39 -0.02 1.13 16 6 C -0.17 -1.31 8.27 71.98 0.60 -0.72 16 7 N -0.55 -9.30 2.37 -890.68 -2.11 -11.41 16 8 C 0.05 0.81 3.81 87.85 0.33 1.15 16 9 C 0.04 0.85 6.38 72.36 0.46 1.31 16 10 O -0.39 -8.03 10.19 -145.61 -1.48 -9.51 16 11 C 0.08 1.50 5.65 72.13 0.41 1.91 16 12 C -0.09 -1.75 0.60 -52.07 -0.03 -1.78 16 13 C -0.12 -3.37 4.47 30.46 0.14 -3.23 16 14 C 0.49 19.49 7.98 87.93 0.70 20.19 16 15 O -0.60 -30.25 17.60 -3.04 -0.05 -30.30 16 16 N -0.61 -22.04 2.94 -818.44 -2.40 -24.44 16 17 C 0.14 6.05 5.87 86.38 0.51 6.56 16 18 C 0.02 1.31 5.30 29.85 0.16 1.47 16 19 C -0.55 -31.30 9.11 25.60 0.23 -31.06 16 20 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 21 C 0.00 0.09 5.46 84.66 0.46 0.55 16 22 N -0.93 -57.28 13.29 21.45 0.28 -56.99 16 23 Si 0.97 44.45 29.54 68.60 2.03 46.47 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 C 0.11 2.68 6.41 86.64 0.56 3.23 16 28 C 0.08 1.28 4.34 85.32 0.37 1.65 16 29 H 0.12 0.39 7.92 -2.39 -0.02 0.37 16 30 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 31 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.57 6.53 -2.39 -0.02 0.55 16 33 H 0.09 0.33 7.92 -2.39 -0.02 0.31 16 34 H 0.07 0.54 7.94 -2.39 -0.02 0.52 16 35 H 0.08 1.69 5.74 -2.39 -0.01 1.68 16 36 H 0.04 0.65 6.54 -2.39 -0.02 0.64 16 37 H 0.07 1.50 3.98 -2.38 -0.01 1.49 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 0.93 7.90 -2.39 -0.02 0.91 16 40 H 0.12 1.74 7.76 -2.39 -0.02 1.72 16 41 H 0.11 3.29 7.26 -2.38 -0.02 3.27 16 42 H 0.11 2.97 4.71 -2.39 -0.01 2.96 16 43 H 0.05 2.31 7.93 -2.39 -0.02 2.29 16 44 H 0.10 3.49 8.14 -2.38 -0.02 3.47 16 45 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 46 H -0.03 -1.90 8.14 -2.39 -0.02 -1.92 16 47 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 48 H 0.11 1.96 7.62 -2.39 -0.02 1.94 16 49 H 0.08 1.91 7.42 -2.39 -0.02 1.89 16 50 H 0.07 0.91 7.72 -2.39 -0.02 0.89 16 51 H 0.10 1.27 6.74 -2.39 -0.02 1.26 16 Total: -1.00 -81.92 389.21 3.09 -78.83 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.93 Total: 12.87 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 5.92 Total: 6.48 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -4.23 Total: -92.85 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -1.56 Total: -51.80 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -81.92 3.09 -78.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273982177.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.600 kcal (2) G-P(sol) polarization free energy of solvation -81.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds