Wall clock time and date at job start Tue Mar 31 2020 21:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00445 * 2 1 4 4 O 1.20829 * 119.99361 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00061 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47469 * 299.99817 * 5 3 2 7 7 C 1.52997 * 109.47327 * 59.99956 * 5 3 2 8 8 C 1.53007 * 109.47195 * 180.02562 * 5 3 2 9 9 N 1.46497 * 109.47047 * 175.00153 * 8 5 3 10 10 C 1.34777 * 119.99852 * 180.02562 * 9 8 5 11 11 O 1.21288 * 120.00179 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00224 * 179.97438 * 10 9 8 13 13 H 1.09005 * 115.56827 * 325.72094 * 12 10 9 14 14 C 1.53058 * 117.50479 * 111.43827 * 12 10 9 15 15 C 1.52730 * 117.50768 * 179.97438 * 12 10 9 16 16 C 1.53218 * 117.84488 * 144.78398 * 15 12 10 17 17 C 1.53260 * 108.62110 * 162.99665 * 16 15 12 18 18 N 1.46803 * 109.45022 * 55.59618 * 17 16 15 19 19 C 1.46906 * 111.00388 * 170.80287 * 18 17 16 20 20 C 1.50703 * 109.46573 * 65.03661 * 19 18 17 21 21 H 1.08007 * 120.00181 * 354.97203 * 20 19 18 22 22 C 1.37878 * 119.99861 * 174.96443 * 20 19 18 23 23 N 1.31515 * 119.99803 * 0.28037 * 22 20 19 24 24 Si 1.86795 * 119.99939 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47040 * 60.00786 * 24 22 20 26 26 H 1.48505 * 109.47193 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47385 * 300.00574 * 24 22 20 28 28 C 1.46808 * 111.56935 * 295.17488 * 18 17 16 29 29 C 1.53215 * 117.84929 * 0.27793 * 15 12 10 30 30 H 1.08996 * 109.47239 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47351 * 300.00539 * 1 2 3 32 32 H 1.09007 * 109.46878 * 60.00163 * 1 2 3 33 33 H 1.08998 * 109.47291 * 300.00133 * 7 5 3 34 34 H 1.09004 * 109.46948 * 60.00096 * 7 5 3 35 35 H 1.08997 * 109.47535 * 179.97438 * 7 5 3 36 36 H 1.08996 * 109.47004 * 55.00066 * 8 5 3 37 37 H 1.08998 * 109.46978 * 295.00027 * 8 5 3 38 38 H 0.96999 * 120.00226 * 359.97438 * 9 8 5 39 39 H 1.08991 * 117.50708 * 0.02562 * 14 12 10 40 40 H 1.09000 * 117.53414 * 214.93066 * 14 12 10 41 41 H 1.08991 * 109.61305 * 43.25145 * 16 15 12 42 42 H 1.09001 * 109.61336 * 282.73181 * 16 15 12 43 43 H 1.09006 * 109.47614 * 295.60428 * 17 16 15 44 44 H 1.09002 * 109.48379 * 175.59701 * 17 16 15 45 45 H 1.08994 * 109.46920 * 305.04324 * 19 18 17 46 46 H 1.08998 * 109.47048 * 185.03647 * 19 18 17 47 47 H 0.97000 * 120.00246 * 359.72546 * 23 22 20 48 48 H 1.09005 * 109.47262 * 184.81594 * 28 18 17 49 49 H 1.08997 * 109.48027 * 304.83563 * 28 18 17 50 50 H 1.09005 * 109.60856 * 316.74912 * 29 15 12 51 51 H 1.08998 * 109.61014 * 77.08973 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9557 0.7808 0.8908 7 6 4.1139 0.5809 -1.2483 8 6 4.0003 2.7419 0.0011 9 7 5.4582 2.8199 0.1220 10 6 6.0692 4.0210 0.1445 11 8 5.4121 5.0373 0.0642 12 6 7.5688 4.1014 0.2695 13 1 8.0318 3.3288 0.8834 14 6 8.3534 4.6038 -0.9449 15 6 8.2016 5.4913 0.2886 16 6 9.4352 5.7038 1.1720 17 6 10.1405 6.9895 0.7265 18 7 9.1907 8.1080 0.7690 19 6 9.8772 9.3900 0.5608 20 6 10.4512 9.4318 -0.8321 21 1 10.3903 8.5607 -1.4677 22 6 11.0540 10.5822 -1.2950 23 7 11.1329 11.6412 -0.5191 24 14 11.7661 10.6339 -3.0211 25 1 10.6889 10.3709 -4.0090 26 1 12.3540 11.9739 -3.2742 27 1 12.8218 9.5979 -3.1523 28 6 8.1033 7.9298 -0.2011 29 6 7.2699 6.7033 0.1863 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 3.8048 -0.4644 -1.2482 34 1 3.7245 1.0749 -2.1385 35 1 5.2023 0.6382 -1.2481 36 1 3.5378 3.2573 0.8429 37 1 3.6872 3.2137 -0.9303 38 1 5.9837 2.0072 0.1866 39 1 7.7848 4.8766 -1.8339 40 1 9.3326 4.1622 -1.1300 41 1 10.1135 4.8577 1.0629 42 1 9.1277 5.7975 2.2136 43 1 10.5118 6.8665 -0.2909 44 1 10.9759 7.1964 1.3955 45 1 10.6819 9.4936 1.2886 46 1 9.1668 10.2071 0.6857 47 1 10.7636 11.6142 0.3774 48 1 7.4679 8.8156 -0.2014 49 1 8.5240 7.7839 -1.1959 50 1 6.5130 6.5196 -0.5762 51 1 6.7863 6.8752 1.1479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:48 Heat of formation + Delta-G solvation = -103.569241 kcal Electronic energy + Delta-G solvation = -29534.822767 eV Core-core repulsion = 25434.680888 eV Total energy + Delta-G solvation = -4100.141879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15460 -40.39548 -38.45765 -37.21791 -36.22771 -35.57795 -33.09600 -32.72004 -30.31969 -29.64851 -28.33250 -27.34570 -25.41148 -24.72799 -23.18707 -22.94802 -22.59647 -20.93797 -20.88117 -20.12728 -18.33494 -18.13731 -17.43643 -17.07900 -16.68760 -16.53189 -15.85267 -15.61959 -14.99908 -14.67703 -14.35159 -14.25211 -14.21339 -14.03300 -13.69421 -13.57609 -13.29076 -13.13817 -12.93762 -12.78298 -12.54305 -12.51169 -12.05042 -11.98138 -11.72982 -11.68987 -11.65629 -11.39271 -11.31333 -10.92794 -10.88565 -10.60897 -10.55683 -10.31632 -10.10901 -10.07106 -9.61316 -9.58870 -9.30678 -9.22125 -9.02826 -8.33250 -7.01552 -6.32869 -4.06552 1.67226 2.02859 2.46677 3.02153 3.43162 3.44903 3.63553 3.88457 3.90824 4.21569 4.27417 4.54828 4.56385 4.61359 4.62807 4.69759 4.79617 4.84204 5.01423 5.06418 5.11317 5.13749 5.16787 5.31569 5.34466 5.40530 5.53043 5.55669 5.66325 5.79256 5.84526 5.87382 5.98349 6.10898 6.11426 6.20735 6.28249 6.45696 6.55052 6.63802 6.78498 6.84269 7.03737 7.17405 7.20013 7.27616 7.30336 7.97180 8.15961 8.20266 8.30806 8.57638 8.85203 9.66840 11.03752 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.001888 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.891369 B =14824.876641 C =14921.194972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.497 6.497 5 C -0.095 4.095 6 H 0.117 0.883 7 C -0.147 4.147 8 C 0.135 3.865 9 N -0.733 5.733 10 C 0.545 3.455 11 O -0.521 6.521 12 C -0.198 4.198 13 H 0.119 0.881 14 C -0.146 4.146 15 C -0.067 4.067 16 C -0.080 4.080 17 C 0.070 3.930 18 N -0.538 5.538 19 C 0.175 3.825 20 C -0.626 4.626 21 H 0.050 0.950 22 C 0.020 3.980 23 N -0.910 5.910 24 Si 1.065 2.935 25 H -0.289 1.289 26 H -0.282 1.282 27 H -0.289 1.289 28 C 0.068 3.932 29 C -0.075 4.075 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.399 0.601 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.063 0.937 45 H 0.017 0.983 46 H 0.022 0.978 47 H 0.269 0.731 48 H 0.063 0.937 49 H 0.036 0.964 50 H 0.082 0.918 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.175 -29.361 1.180 33.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.384 6.384 5 C -0.114 4.114 6 H 0.135 0.865 7 C -0.204 4.204 8 C 0.011 3.989 9 N -0.387 5.387 10 C 0.333 3.667 11 O -0.396 6.396 12 C -0.219 4.219 13 H 0.137 0.863 14 C -0.184 4.184 15 C -0.068 4.068 16 C -0.118 4.118 17 C -0.059 4.059 18 N -0.262 5.262 19 C 0.049 3.951 20 C -0.665 4.665 21 H 0.069 0.931 22 C -0.185 4.185 23 N -0.546 5.546 24 Si 0.893 3.107 25 H -0.215 1.215 26 H -0.207 1.207 27 H -0.216 1.216 28 C -0.060 4.060 29 C -0.112 4.112 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.234 0.766 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.035 0.965 46 H 0.040 0.960 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.054 0.946 50 H 0.100 0.900 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.329 -27.310 0.509 31.322 hybrid contribution -0.432 -1.566 0.341 1.660 sum -15.760 -28.876 0.850 32.908 Atomic orbital electron populations 1.23317 0.75884 1.03884 1.02833 1.86481 1.23728 1.33151 1.84059 1.23422 0.91533 0.81546 0.72518 1.90739 1.67035 1.36228 1.44388 1.21192 0.88218 0.98819 1.03194 0.86517 1.21824 1.02097 1.01085 0.95401 1.21086 0.80765 0.92930 1.04159 1.45915 1.06997 1.08885 1.76909 1.19818 0.88958 0.82680 0.75271 1.90733 1.66618 1.34062 1.48140 1.22292 0.91054 1.02272 1.06286 0.86292 1.23052 1.00414 1.02903 0.91983 1.21582 0.97631 0.89489 0.98115 1.21328 0.93844 0.97856 0.98785 1.21785 0.94344 0.89920 0.99809 1.62199 1.11408 1.03291 1.49331 1.19831 0.93111 0.86467 0.95694 1.22561 1.42020 1.01142 1.00768 0.93148 1.25753 0.95310 0.92362 1.05041 1.70783 1.43410 1.30451 1.09960 0.83602 0.76283 0.76007 0.74769 1.21527 1.20747 1.21571 1.21903 0.93121 0.96609 0.94399 1.21458 0.95614 0.91358 1.02789 0.87888 0.91695 0.91703 0.90724 0.91573 0.90606 0.90294 0.90395 0.76637 0.88463 0.87968 0.92253 0.91151 0.94500 0.91807 0.96471 0.95981 0.92011 0.91890 0.94591 0.89991 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 101.05 1.07 1.24 16 2 O -0.36 -2.50 10.47 -39.25 -0.41 -2.91 16 3 C 0.47 3.88 7.26 36.00 0.26 4.14 16 4 O -0.50 -5.84 15.67 -18.75 -0.29 -6.14 16 5 C -0.09 -0.55 2.86 -91.77 -0.26 -0.82 16 6 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 7 C -0.15 -0.63 9.00 37.16 0.33 -0.29 16 8 C 0.13 1.19 4.41 -4.04 -0.02 1.18 16 9 N -0.73 -6.15 5.28 -60.30 -0.32 -6.46 16 10 C 0.55 6.78 7.59 -10.99 -0.08 6.70 16 11 O -0.52 -8.68 13.13 5.55 0.07 -8.61 16 12 C -0.20 -2.28 5.93 -91.88 -0.54 -2.82 16 13 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 14 C -0.15 -1.83 9.62 -26.85 -0.26 -2.09 16 15 C -0.07 -1.01 2.01 -154.57 -0.31 -1.32 16 16 C -0.08 -1.23 5.87 -26.48 -0.16 -1.38 16 17 C 0.07 1.38 5.08 -3.74 -0.02 1.36 16 18 N -0.54 -12.08 4.78 -235.89 -1.13 -13.21 16 19 C 0.18 4.63 4.45 -4.97 -0.02 4.61 16 20 C -0.63 -17.71 7.79 -34.44 -0.27 -17.97 16 21 H 0.05 1.43 5.93 -52.48 -0.31 1.12 16 22 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 23 N -0.91 -27.97 13.65 55.43 0.76 -27.22 16 24 Si 1.06 25.59 29.90 -169.99 -5.08 20.51 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.07 1.46 4.99 -3.74 -0.02 1.44 16 29 C -0.07 -1.35 4.32 -26.49 -0.11 -1.46 16 30 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 32 H 0.06 0.33 8.13 -51.92 -0.42 -0.09 16 33 H 0.07 0.26 8.11 -51.93 -0.42 -0.16 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.24 7.18 -51.93 -0.37 -0.14 16 36 H 0.08 0.86 7.96 -51.93 -0.41 0.44 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 2.01 7.66 -40.82 -0.31 1.70 16 39 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.78 6.96 -51.93 -0.36 0.42 16 44 H 0.06 1.26 8.01 -51.93 -0.42 0.85 16 45 H 0.02 0.48 8.03 -51.93 -0.42 0.06 16 46 H 0.02 0.62 7.81 -51.93 -0.41 0.22 16 47 H 0.27 8.27 7.19 -40.82 -0.29 7.97 16 48 H 0.06 1.41 8.08 -51.93 -0.42 0.99 16 49 H 0.04 0.82 6.85 -51.93 -0.36 0.47 16 50 H 0.08 1.52 6.00 -51.93 -0.31 1.20 16 51 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 LS Contribution 404.78 15.07 6.10 6.10 Total: -1.00 -35.25 404.78 -9.49 -44.74 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.68 Total: 0.20 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.51 Total: -7.01 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.69 Total: -46.89 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.63 Total: -17.66 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.51 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.25 -9.49 -44.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.826 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds