Wall clock time and date at job start Tue Mar 31 2020 21:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00445 * 2 1 4 4 O 1.20829 * 119.99361 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00061 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47469 * 299.99817 * 5 3 2 7 7 C 1.52997 * 109.47327 * 59.99956 * 5 3 2 8 8 C 1.53007 * 109.47195 * 180.02562 * 5 3 2 9 9 N 1.46497 * 109.47047 * 175.00153 * 8 5 3 10 10 C 1.34777 * 119.99852 * 180.02562 * 9 8 5 11 11 O 1.21288 * 120.00179 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00224 * 179.97438 * 10 9 8 13 13 H 1.09005 * 115.56827 * 325.72094 * 12 10 9 14 14 C 1.53058 * 117.50479 * 111.43827 * 12 10 9 15 15 C 1.52730 * 117.50768 * 179.97438 * 12 10 9 16 16 C 1.53218 * 117.84488 * 144.78398 * 15 12 10 17 17 C 1.53260 * 108.62110 * 162.99665 * 16 15 12 18 18 N 1.46803 * 109.45022 * 55.59618 * 17 16 15 19 19 C 1.46906 * 111.00388 * 170.80287 * 18 17 16 20 20 C 1.50703 * 109.46573 * 65.03661 * 19 18 17 21 21 H 1.08007 * 120.00181 * 354.97203 * 20 19 18 22 22 C 1.37878 * 119.99861 * 174.96443 * 20 19 18 23 23 N 1.31515 * 119.99803 * 0.28037 * 22 20 19 24 24 Si 1.86795 * 119.99939 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47040 * 60.00786 * 24 22 20 26 26 H 1.48505 * 109.47193 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47385 * 300.00574 * 24 22 20 28 28 C 1.46808 * 111.56935 * 295.17488 * 18 17 16 29 29 C 1.53215 * 117.84929 * 0.27793 * 15 12 10 30 30 H 1.08996 * 109.47239 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47351 * 300.00539 * 1 2 3 32 32 H 1.09007 * 109.46878 * 60.00163 * 1 2 3 33 33 H 1.08998 * 109.47291 * 300.00133 * 7 5 3 34 34 H 1.09004 * 109.46948 * 60.00096 * 7 5 3 35 35 H 1.08997 * 109.47535 * 179.97438 * 7 5 3 36 36 H 1.08996 * 109.47004 * 55.00066 * 8 5 3 37 37 H 1.08998 * 109.46978 * 295.00027 * 8 5 3 38 38 H 0.96999 * 120.00226 * 359.97438 * 9 8 5 39 39 H 1.08991 * 117.50708 * 0.02562 * 14 12 10 40 40 H 1.09000 * 117.53414 * 214.93066 * 14 12 10 41 41 H 1.08991 * 109.61305 * 43.25145 * 16 15 12 42 42 H 1.09001 * 109.61336 * 282.73181 * 16 15 12 43 43 H 1.09006 * 109.47614 * 295.60428 * 17 16 15 44 44 H 1.09002 * 109.48379 * 175.59701 * 17 16 15 45 45 H 1.08994 * 109.46920 * 305.04324 * 19 18 17 46 46 H 1.08998 * 109.47048 * 185.03647 * 19 18 17 47 47 H 0.97000 * 120.00246 * 359.72546 * 23 22 20 48 48 H 1.09005 * 109.47262 * 184.81594 * 28 18 17 49 49 H 1.08997 * 109.48027 * 304.83563 * 28 18 17 50 50 H 1.09005 * 109.60856 * 316.74912 * 29 15 12 51 51 H 1.08998 * 109.61014 * 77.08973 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9557 0.7808 0.8908 7 6 4.1139 0.5809 -1.2483 8 6 4.0003 2.7419 0.0011 9 7 5.4582 2.8199 0.1220 10 6 6.0692 4.0210 0.1445 11 8 5.4121 5.0373 0.0642 12 6 7.5688 4.1014 0.2695 13 1 8.0318 3.3288 0.8834 14 6 8.3534 4.6038 -0.9449 15 6 8.2016 5.4913 0.2886 16 6 9.4352 5.7038 1.1720 17 6 10.1405 6.9895 0.7265 18 7 9.1907 8.1080 0.7690 19 6 9.8772 9.3900 0.5608 20 6 10.4512 9.4318 -0.8321 21 1 10.3903 8.5607 -1.4677 22 6 11.0540 10.5822 -1.2950 23 7 11.1329 11.6412 -0.5191 24 14 11.7661 10.6339 -3.0211 25 1 10.6889 10.3709 -4.0090 26 1 12.3540 11.9739 -3.2742 27 1 12.8218 9.5979 -3.1523 28 6 8.1033 7.9298 -0.2011 29 6 7.2699 6.7033 0.1863 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 3.8048 -0.4644 -1.2482 34 1 3.7245 1.0749 -2.1385 35 1 5.2023 0.6382 -1.2481 36 1 3.5378 3.2573 0.8429 37 1 3.6872 3.2137 -0.9303 38 1 5.9837 2.0072 0.1866 39 1 7.7848 4.8766 -1.8339 40 1 9.3326 4.1622 -1.1300 41 1 10.1135 4.8577 1.0629 42 1 9.1277 5.7975 2.2136 43 1 10.5118 6.8665 -0.2909 44 1 10.9759 7.1964 1.3955 45 1 10.6819 9.4936 1.2886 46 1 9.1668 10.2071 0.6857 47 1 10.7636 11.6142 0.3774 48 1 7.4679 8.8156 -0.2014 49 1 8.5240 7.7839 -1.1959 50 1 6.5130 6.5196 -0.5762 51 1 6.7863 6.8752 1.1479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:47 Heat of formation + Delta-G solvation = -128.191945 kcal Electronic energy + Delta-G solvation = -29535.890488 eV Core-core repulsion = 25434.680888 eV Total energy + Delta-G solvation = -4101.209600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83441 -41.42806 -39.73151 -37.95981 -37.38837 -36.67347 -34.87710 -33.76170 -31.83163 -31.24608 -28.81873 -28.04920 -27.31405 -25.48317 -24.95530 -24.16628 -23.86096 -22.52516 -21.58753 -21.04736 -19.82735 -18.78312 -18.66682 -18.21630 -17.72499 -17.23675 -16.82700 -16.52998 -16.41138 -15.96974 -15.84348 -15.66964 -15.54902 -15.07345 -14.70013 -14.66550 -14.33953 -14.17340 -14.00143 -13.81636 -13.63969 -13.43943 -13.37468 -13.16638 -13.00490 -12.93330 -12.71682 -12.53654 -12.28418 -12.25754 -12.17676 -12.00704 -11.94481 -11.85732 -11.53284 -11.44393 -11.26604 -10.88771 -10.75417 -10.58739 -10.42304 -10.15878 -8.99681 -8.62123 -6.42655 1.04842 1.45616 1.48052 1.48670 1.56241 1.75638 2.25579 2.53002 2.84627 3.12419 3.33137 3.33902 3.63146 3.70806 3.74469 3.80469 3.89977 4.00142 4.12186 4.13531 4.28407 4.29500 4.39825 4.43066 4.56076 4.61427 4.67607 4.68518 4.70051 4.79218 4.82942 4.86051 4.90745 4.92974 4.93422 5.02022 5.04868 5.08869 5.19829 5.20995 5.24871 5.31322 5.33659 5.40232 5.50401 5.83417 5.97532 6.43289 6.47962 6.50838 6.54189 6.59989 7.28877 7.40480 8.68478 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.001888 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.891369 B =14824.876641 C =14921.194972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.467 3.533 4 O -0.542 6.542 5 C -0.083 4.083 6 H 0.149 0.851 7 C -0.144 4.144 8 C 0.138 3.862 9 N -0.707 5.707 10 C 0.538 3.462 11 O -0.572 6.572 12 C -0.163 4.163 13 H 0.164 0.836 14 C -0.135 4.135 15 C -0.105 4.105 16 C -0.064 4.064 17 C 0.068 3.932 18 N -0.540 5.540 19 C 0.183 3.817 20 C -0.628 4.628 21 H 0.050 0.950 22 C -0.033 4.033 23 N -0.934 5.934 24 Si 1.115 2.885 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.267 1.267 28 C 0.074 3.926 29 C -0.057 4.057 30 H 0.135 0.865 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.421 0.579 39 H 0.085 0.915 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.021 0.979 44 H 0.058 0.942 45 H 0.001 0.999 46 H -0.007 1.007 47 H 0.255 0.745 48 H 0.036 0.964 49 H 0.018 0.982 50 H 0.075 0.925 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.150 -34.047 0.563 36.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C 0.311 3.689 4 O -0.432 6.432 5 C -0.102 4.102 6 H 0.167 0.833 7 C -0.201 4.201 8 C 0.014 3.986 9 N -0.361 5.361 10 C 0.325 3.675 11 O -0.451 6.451 12 C -0.183 4.183 13 H 0.182 0.818 14 C -0.172 4.172 15 C -0.106 4.106 16 C -0.102 4.102 17 C -0.060 4.060 18 N -0.264 5.264 19 C 0.056 3.944 20 C -0.667 4.667 21 H 0.068 0.932 22 C -0.232 4.232 23 N -0.571 5.571 24 Si 0.936 3.064 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.192 1.192 28 C -0.054 4.054 29 C -0.094 4.094 30 H 0.153 0.847 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.260 0.740 39 H 0.103 0.897 40 H 0.148 0.852 41 H 0.119 0.881 42 H 0.089 0.911 43 H 0.039 0.961 44 H 0.076 0.924 45 H 0.019 0.981 46 H 0.011 0.989 47 H 0.065 0.935 48 H 0.055 0.945 49 H 0.036 0.964 50 H 0.094 0.906 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.305 -32.101 -0.088 35.144 hybrid contribution -0.876 -0.146 0.572 1.056 sum -15.181 -32.247 0.484 35.645 Atomic orbital electron populations 1.23565 0.74827 1.05847 1.02387 1.86478 1.24819 1.32247 1.83505 1.23943 0.92502 0.81255 0.71177 1.90731 1.68160 1.37677 1.46601 1.21181 0.86603 0.96821 1.05599 0.83321 1.21854 1.03125 1.01417 0.93666 1.20934 0.80748 0.94953 1.01993 1.45625 1.06891 1.08701 1.74904 1.20142 0.89547 0.82965 0.74804 1.90730 1.67695 1.36112 1.50579 1.22348 0.90194 1.00235 1.05558 0.81825 1.23130 1.01747 1.01313 0.91049 1.21408 0.97900 0.90068 1.01188 1.21220 0.94116 0.96321 0.98541 1.21900 0.94198 0.91005 0.98944 1.62177 1.11958 1.02728 1.49496 1.19574 0.92016 0.88046 0.94743 1.22780 1.41483 1.01088 1.01334 0.93194 1.27323 0.95366 0.91952 1.08513 1.70915 1.44904 1.31492 1.09772 0.82970 0.76553 0.76580 0.70314 1.19979 1.20781 1.19164 1.21853 0.92741 0.97515 0.93319 1.21171 0.95364 0.91476 1.01413 0.84703 0.92168 0.92243 0.89261 0.92943 0.88656 0.92674 0.92696 0.74008 0.89654 0.85232 0.88103 0.91082 0.96078 0.92388 0.98052 0.98898 0.93526 0.94496 0.96377 0.90645 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.43 16 2 O -0.35 -4.34 10.47 -51.40 -0.54 -4.88 16 3 C 0.47 7.32 7.26 71.23 0.52 7.84 16 4 O -0.54 -13.10 15.67 21.95 0.34 -12.75 16 5 C -0.08 -0.77 2.86 -11.54 -0.03 -0.80 16 6 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 7 C -0.14 -0.77 9.00 71.98 0.65 -0.12 16 8 C 0.14 2.32 4.41 86.38 0.38 2.70 16 9 N -0.71 -9.79 5.28 -463.06 -2.45 -12.24 16 10 C 0.54 12.23 7.59 87.66 0.67 12.89 16 11 O -0.57 -19.20 13.13 -3.05 -0.04 -19.24 16 12 C -0.16 -3.07 5.93 -11.61 -0.07 -3.14 16 13 H 0.16 1.72 8.14 -2.38 -0.02 1.70 16 14 C -0.14 -2.91 9.62 30.52 0.29 -2.61 16 15 C -0.10 -2.92 2.01 -52.22 -0.11 -3.03 16 16 C -0.06 -1.79 5.87 30.75 0.18 -1.61 16 17 C 0.07 2.64 5.08 86.41 0.44 3.08 16 18 N -0.54 -25.10 4.78 -900.21 -4.30 -29.40 16 19 C 0.18 10.20 4.45 85.56 0.38 10.58 16 20 C -0.63 -36.50 7.79 25.60 0.20 -36.30 16 21 H 0.05 2.87 5.93 -2.91 -0.02 2.85 16 22 C -0.03 -1.95 5.46 84.65 0.46 -1.49 16 23 N -0.93 -59.08 13.65 21.45 0.29 -58.79 16 24 Si 1.11 51.42 29.90 68.60 2.05 53.47 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 C 0.07 3.32 4.99 86.41 0.43 3.75 16 29 C -0.06 -2.08 4.32 30.75 0.13 -1.95 16 30 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 32 H 0.06 0.58 8.13 -2.38 -0.02 0.56 16 33 H 0.09 0.28 8.11 -2.39 -0.02 0.26 16 34 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.09 0.16 7.18 -2.39 -0.02 0.14 16 36 H 0.05 1.22 7.96 -2.39 -0.02 1.20 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.42 2.15 7.66 -92.71 -0.71 1.44 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.10 2.02 8.08 -2.39 -0.02 2.00 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.02 0.88 6.96 -2.38 -0.02 0.87 16 44 H 0.06 2.29 8.01 -2.39 -0.02 2.27 16 45 H 0.00 0.08 8.03 -2.39 -0.02 0.06 16 46 H -0.01 -0.43 7.81 -2.39 -0.02 -0.45 16 47 H 0.26 16.44 7.19 -92.71 -0.67 15.78 16 48 H 0.04 1.78 8.08 -2.38 -0.02 1.76 16 49 H 0.02 0.86 6.85 -2.39 -0.02 0.84 16 50 H 0.08 2.89 6.00 -2.38 -0.01 2.88 16 51 H 0.05 1.96 8.11 -2.39 -0.02 1.94 16 Total: -1.00 -83.00 404.78 1.40 -81.61 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.32 Total: 11.00 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 5.72 Total: -8.78 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -6.46 Total: -100.42 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.23 Total: -36.88 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.47 kcal Total: -83.00 1.40 -81.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.585 kcal (2) G-P(sol) polarization free energy of solvation -83.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds