Wall clock time and date at job start Tue Mar 31 2020 21:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34222 * 116.99843 * 2 1 4 4 O 1.20819 * 120.00287 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99849 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47145 * 300.00215 * 5 3 2 7 7 C 1.53001 * 109.47054 * 59.99820 * 5 3 2 8 8 C 1.53001 * 109.47289 * 179.97438 * 5 3 2 9 9 N 1.46501 * 109.47293 * 174.99831 * 8 5 3 10 10 C 1.46816 * 124.35844 * 89.99997 * 9 8 5 11 11 C 1.54590 * 105.56514 * 163.00241 * 10 9 8 12 12 C 1.54355 * 101.55439 * 25.00059 * 11 10 9 13 13 C 1.52541 * 110.08070 * 94.64682 * 12 11 10 14 14 C 1.53144 * 109.32081 * 178.06120 * 13 12 11 15 15 N 1.46848 * 109.46262 * 301.74603 * 14 13 12 16 16 C 1.46899 * 111.00035 * 186.34248 * 15 14 13 17 17 C 1.50695 * 109.47510 * 65.65333 * 16 15 14 18 18 H 1.08009 * 119.99852 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00415 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99890 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00540 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46687 * 59.99916 * 21 19 17 23 23 H 1.48490 * 109.47460 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47084 * 300.00600 * 21 19 17 25 25 C 1.46849 * 111.30339 * 62.16528 * 15 14 13 26 26 C 1.52534 * 110.05895 * 216.67695 * 12 11 10 27 27 C 1.34566 * 124.35814 * 269.95941 * 9 8 5 28 28 O 1.21284 * 125.03512 * 0.71727 * 27 9 8 29 29 H 1.08996 * 109.47260 * 299.99735 * 1 2 3 30 30 H 1.08998 * 109.46933 * 59.99904 * 1 2 3 31 31 H 1.08997 * 109.47071 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47190 * 300.00043 * 7 5 3 33 33 H 1.09005 * 109.47163 * 60.00657 * 7 5 3 34 34 H 1.09002 * 109.47034 * 180.02562 * 7 5 3 35 35 H 1.09000 * 109.46691 * 54.99766 * 8 5 3 36 36 H 1.08996 * 109.46859 * 295.00329 * 8 5 3 37 37 H 1.09002 * 110.24344 * 282.05277 * 10 9 8 38 38 H 1.08998 * 110.24295 * 43.95709 * 10 9 8 39 39 H 1.09009 * 110.98490 * 143.11823 * 11 10 9 40 40 H 1.09004 * 110.99126 * 266.92759 * 11 10 9 41 41 H 1.08995 * 109.50207 * 298.01898 * 13 12 11 42 42 H 1.09002 * 109.49758 * 58.11277 * 13 12 11 43 43 H 1.09002 * 109.46988 * 181.74242 * 14 13 12 44 44 H 1.09005 * 109.47220 * 61.74305 * 14 13 12 45 45 H 1.09004 * 109.47344 * 185.65754 * 16 15 14 46 46 H 1.09005 * 109.46850 * 305.65669 * 16 15 14 47 47 H 0.97002 * 119.99646 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.47691 * 177.82934 * 25 15 14 49 49 H 1.09002 * 109.46960 * 57.82608 * 25 15 14 50 50 H 1.08991 * 109.50028 * 301.87279 * 26 12 11 51 51 H 1.09002 * 109.50014 * 61.93915 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7805 0.8891 7 6 4.1129 0.5815 -1.2502 8 6 4.0002 2.7420 -0.0011 9 7 5.4582 2.8202 0.1188 10 6 6.3837 2.8342 -1.0209 11 6 7.7261 3.3555 -0.4587 12 6 7.6051 2.9757 1.0325 13 6 8.2741 1.6284 1.2857 14 6 8.1866 1.2916 2.7771 15 7 8.8331 2.3544 3.5575 16 6 8.9022 1.9950 4.9802 17 6 9.8122 0.8066 5.1546 18 1 10.2918 0.3628 4.2945 19 6 10.0336 0.2864 6.4121 20 7 9.4501 0.8271 7.4594 21 14 11.1622 -1.1863 6.6284 22 1 12.5214 -0.8446 6.1371 23 1 11.2320 -1.5496 8.0665 24 1 10.6302 -2.3358 5.8531 25 6 8.1518 3.6420 3.3723 26 6 8.2383 4.0581 1.9010 27 6 6.1215 2.8893 1.2875 28 8 5.6028 2.8832 2.3839 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.8038 -0.4638 -1.2502 33 1 3.7229 1.0758 -2.1400 34 1 5.2014 0.6381 -1.2504 35 1 3.5382 3.2577 0.8408 36 1 3.6863 3.2133 -0.9324 37 1 6.5072 1.8270 -1.4188 38 1 6.0149 3.5036 -1.7980 39 1 8.5691 2.8460 -0.9257 40 1 7.8078 4.4355 -0.5818 41 1 7.7668 0.8559 0.7079 42 1 9.3207 1.6797 0.9852 43 1 8.6911 0.3439 2.9657 44 1 7.1399 1.2108 3.0705 45 1 9.2930 2.8385 5.5494 46 1 7.9044 1.7445 5.3405 47 1 9.6062 0.4613 8.3442 48 1 8.6309 4.3992 3.9929 49 1 7.1053 3.5442 3.6614 50 1 9.2836 4.1850 1.6198 51 1 7.7060 4.9982 1.7565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:22 Heat of formation + Delta-G solvation = -116.417127 kcal Electronic energy + Delta-G solvation = -31127.019147 eV Core-core repulsion = 27026.320142 eV Total energy + Delta-G solvation = -4100.699006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.32175 -40.72174 -37.67425 -36.87249 -36.49126 -35.12035 -33.17488 -31.98437 -30.40194 -29.70040 -28.12680 -27.00522 -26.81758 -25.05248 -23.87941 -22.77804 -21.92580 -21.39928 -20.58524 -19.96565 -18.40907 -18.01066 -17.23841 -16.70054 -16.35096 -16.16101 -15.97660 -15.46185 -15.01870 -14.41755 -14.36598 -14.12496 -14.00476 -13.89434 -13.63176 -13.39068 -13.30255 -13.18749 -12.83586 -12.65395 -12.44609 -12.35006 -12.08587 -12.04353 -11.82526 -11.71500 -11.59058 -11.51647 -11.34153 -11.12055 -11.02172 -10.72387 -10.68687 -10.58495 -10.49542 -10.08084 -9.99570 -9.56294 -9.32378 -9.04349 -8.83837 -8.34339 -7.00931 -5.93810 -3.95043 1.88649 2.23556 2.69925 2.99488 3.37726 3.41631 3.44237 4.23766 4.25408 4.37773 4.48491 4.50231 4.55856 4.66261 4.77402 4.85634 4.86908 4.93197 5.07425 5.12890 5.15778 5.19892 5.27026 5.32441 5.40307 5.41331 5.48048 5.61624 5.67671 5.69098 5.76231 5.84541 5.97696 6.01382 6.05672 6.09776 6.22320 6.24204 6.44221 6.51143 6.68816 6.80280 6.81886 7.08342 7.40556 7.44882 7.53619 7.89469 8.22296 8.27145 8.36178 8.69009 9.12625 9.68411 11.17073 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012414 B = 0.002958 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.967983 B = 9463.168811 C =10646.870569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.472 3.528 4 O -0.508 6.508 5 C -0.105 4.105 6 H 0.116 0.884 7 C -0.145 4.145 8 C 0.145 3.855 9 N -0.624 5.624 10 C 0.101 3.899 11 C -0.126 4.126 12 C -0.087 4.087 13 C -0.093 4.093 14 C 0.060 3.940 15 N -0.534 5.534 16 C 0.195 3.805 17 C -0.505 4.505 18 H 0.062 0.938 19 C 0.054 3.946 20 N -0.899 5.899 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.042 3.958 26 C -0.089 4.089 27 C 0.528 3.472 28 O -0.506 6.506 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.028 0.972 45 H 0.028 0.972 46 H -0.010 1.010 47 H 0.261 0.739 48 H 0.064 0.936 49 H 0.050 0.950 50 H 0.077 0.923 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.194 1.942 -23.399 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.315 3.685 4 O -0.395 6.395 5 C -0.125 4.125 6 H 0.134 0.866 7 C -0.202 4.202 8 C 0.023 3.977 9 N -0.360 5.360 10 C -0.021 4.021 11 C -0.164 4.164 12 C -0.091 4.091 13 C -0.131 4.131 14 C -0.068 4.068 15 N -0.259 5.259 16 C 0.070 3.930 17 C -0.544 4.544 18 H 0.080 0.920 19 C -0.147 4.147 20 N -0.539 5.539 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.087 4.087 26 C -0.127 4.127 27 C 0.316 3.684 28 O -0.380 6.380 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.008 0.992 47 H 0.070 0.930 48 H 0.082 0.918 49 H 0.068 0.932 50 H 0.096 0.904 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.327 2.271 -22.765 25.988 hybrid contribution -0.597 -0.882 0.527 1.188 sum -12.924 1.389 -22.238 25.758 Atomic orbital electron populations 1.23290 0.76198 1.03810 1.02607 1.86516 1.23514 1.33321 1.83900 1.23614 0.91678 0.81390 0.71845 1.90674 1.67230 1.36296 1.45303 1.21550 0.87333 1.00318 1.03297 0.86625 1.21871 1.02388 1.01026 0.94941 1.21096 0.79263 0.93014 1.04366 1.48325 1.05385 1.74528 1.07725 1.22215 0.89588 1.01499 0.88843 1.22767 0.96846 1.02239 0.94538 1.21113 0.92554 0.99637 0.95802 1.21488 1.00574 0.92708 0.98308 1.21959 0.97361 0.96693 0.90801 1.62034 1.50505 1.00619 1.12706 1.19654 0.95613 0.96372 0.81375 1.21140 1.27200 1.13209 0.92822 0.92001 1.24999 0.96334 0.97409 0.95966 1.69965 1.43782 1.41386 0.98726 0.86585 0.81254 0.82870 0.76810 1.20212 1.21438 1.20350 1.22170 0.98635 0.93477 0.94384 1.21394 1.00614 0.95151 0.95555 1.20860 0.89518 0.74544 0.83487 1.90725 1.74017 1.48476 1.24770 0.91747 0.91897 0.87988 0.91030 0.92052 0.90434 0.88996 0.89567 0.90956 0.90556 0.88888 0.89943 0.92358 0.90062 0.89909 0.95360 0.95384 0.99175 0.92965 0.91792 0.93213 0.90435 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.61 10.47 -39.24 -0.41 -4.03 16 3 C 0.47 5.28 7.26 36.01 0.26 5.54 16 4 O -0.51 -6.78 15.67 -18.74 -0.29 -7.08 16 5 C -0.10 -1.04 3.04 -91.77 -0.28 -1.32 16 6 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 7 C -0.15 -1.05 8.80 37.16 0.33 -0.72 16 8 C 0.15 1.53 4.70 -4.04 -0.02 1.51 16 9 N -0.62 -6.86 2.71 -172.47 -0.47 -7.33 16 10 C 0.10 0.76 6.69 -3.03 -0.02 0.74 16 11 C -0.13 -1.07 6.22 -25.19 -0.16 -1.23 16 12 C -0.09 -1.16 0.55 -155.38 -0.09 -1.24 16 13 C -0.09 -1.36 4.77 -26.89 -0.13 -1.48 16 14 C 0.06 1.22 5.08 -3.78 -0.02 1.20 16 15 N -0.53 -12.01 4.63 -235.97 -1.09 -13.11 16 16 C 0.20 5.36 4.72 -4.98 -0.02 5.34 16 17 C -0.51 -14.55 8.42 -34.44 -0.29 -14.84 16 18 H 0.06 1.74 7.12 -52.48 -0.37 1.36 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 21 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.04 0.83 5.24 -3.78 -0.02 0.81 16 26 C -0.09 -1.32 4.78 -26.89 -0.13 -1.45 16 27 C 0.53 7.89 6.33 -11.04 -0.07 7.82 16 28 O -0.51 -9.88 13.85 5.55 0.08 -9.80 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.53 5.44 -51.93 -0.28 0.25 16 35 H 0.09 1.19 7.75 -51.93 -0.40 0.79 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.45 6.18 -51.93 -0.32 0.13 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.65 7.87 -51.92 -0.41 0.24 16 40 H 0.08 0.63 7.89 -51.93 -0.41 0.22 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.08 1.80 6.68 -51.93 -0.35 1.45 16 44 H 0.03 0.63 6.68 -51.93 -0.35 0.28 16 45 H 0.03 0.82 7.98 -51.93 -0.41 0.41 16 46 H -0.01 -0.29 8.13 -51.93 -0.42 -0.71 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.06 1.26 8.01 -51.93 -0.42 0.85 16 49 H 0.05 1.09 5.78 -51.93 -0.30 0.79 16 50 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 51 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 395.56 15.07 5.96 5.96 Total: -1.00 -35.37 395.56 -8.84 -44.21 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -8.65 Total: -2.44 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 0.32 Total: 3.47 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.82 Total: -47.30 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.63 Total: -20.91 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.37 -8.84 -44.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.204 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds