Wall clock time and date at job start Tue Mar 31 2020 21:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34222 * 116.99843 * 2 1 4 4 O 1.20819 * 120.00287 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99849 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47145 * 300.00215 * 5 3 2 7 7 C 1.53001 * 109.47054 * 59.99820 * 5 3 2 8 8 C 1.53001 * 109.47289 * 179.97438 * 5 3 2 9 9 N 1.46501 * 109.47293 * 174.99831 * 8 5 3 10 10 C 1.46816 * 124.35844 * 89.99997 * 9 8 5 11 11 C 1.54590 * 105.56514 * 163.00241 * 10 9 8 12 12 C 1.54355 * 101.55439 * 25.00059 * 11 10 9 13 13 C 1.52541 * 110.08070 * 94.64682 * 12 11 10 14 14 C 1.53144 * 109.32081 * 178.06120 * 13 12 11 15 15 N 1.46848 * 109.46262 * 301.74603 * 14 13 12 16 16 C 1.46899 * 111.00035 * 186.34248 * 15 14 13 17 17 C 1.50695 * 109.47510 * 65.65333 * 16 15 14 18 18 H 1.08009 * 119.99852 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00415 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99890 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00540 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46687 * 59.99916 * 21 19 17 23 23 H 1.48490 * 109.47460 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47084 * 300.00600 * 21 19 17 25 25 C 1.46849 * 111.30339 * 62.16528 * 15 14 13 26 26 C 1.52534 * 110.05895 * 216.67695 * 12 11 10 27 27 C 1.34566 * 124.35814 * 269.95941 * 9 8 5 28 28 O 1.21284 * 125.03512 * 0.71727 * 27 9 8 29 29 H 1.08996 * 109.47260 * 299.99735 * 1 2 3 30 30 H 1.08998 * 109.46933 * 59.99904 * 1 2 3 31 31 H 1.08997 * 109.47071 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47190 * 300.00043 * 7 5 3 33 33 H 1.09005 * 109.47163 * 60.00657 * 7 5 3 34 34 H 1.09002 * 109.47034 * 180.02562 * 7 5 3 35 35 H 1.09000 * 109.46691 * 54.99766 * 8 5 3 36 36 H 1.08996 * 109.46859 * 295.00329 * 8 5 3 37 37 H 1.09002 * 110.24344 * 282.05277 * 10 9 8 38 38 H 1.08998 * 110.24295 * 43.95709 * 10 9 8 39 39 H 1.09009 * 110.98490 * 143.11823 * 11 10 9 40 40 H 1.09004 * 110.99126 * 266.92759 * 11 10 9 41 41 H 1.08995 * 109.50207 * 298.01898 * 13 12 11 42 42 H 1.09002 * 109.49758 * 58.11277 * 13 12 11 43 43 H 1.09002 * 109.46988 * 181.74242 * 14 13 12 44 44 H 1.09005 * 109.47220 * 61.74305 * 14 13 12 45 45 H 1.09004 * 109.47344 * 185.65754 * 16 15 14 46 46 H 1.09005 * 109.46850 * 305.65669 * 16 15 14 47 47 H 0.97002 * 119.99646 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.47691 * 177.82934 * 25 15 14 49 49 H 1.09002 * 109.46960 * 57.82608 * 25 15 14 50 50 H 1.08991 * 109.50028 * 301.87279 * 26 12 11 51 51 H 1.09002 * 109.50014 * 61.93915 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7805 0.8891 7 6 4.1129 0.5815 -1.2502 8 6 4.0002 2.7420 -0.0011 9 7 5.4582 2.8202 0.1188 10 6 6.3837 2.8342 -1.0209 11 6 7.7261 3.3555 -0.4587 12 6 7.6051 2.9757 1.0325 13 6 8.2741 1.6284 1.2857 14 6 8.1866 1.2916 2.7771 15 7 8.8331 2.3544 3.5575 16 6 8.9022 1.9950 4.9802 17 6 9.8122 0.8066 5.1546 18 1 10.2918 0.3628 4.2945 19 6 10.0336 0.2864 6.4121 20 7 9.4501 0.8271 7.4594 21 14 11.1622 -1.1863 6.6284 22 1 12.5214 -0.8446 6.1371 23 1 11.2320 -1.5496 8.0665 24 1 10.6302 -2.3358 5.8531 25 6 8.1518 3.6420 3.3723 26 6 8.2383 4.0581 1.9010 27 6 6.1215 2.8893 1.2875 28 8 5.6028 2.8832 2.3839 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.8038 -0.4638 -1.2502 33 1 3.7229 1.0758 -2.1400 34 1 5.2014 0.6381 -1.2504 35 1 3.5382 3.2577 0.8408 36 1 3.6863 3.2133 -0.9324 37 1 6.5072 1.8270 -1.4188 38 1 6.0149 3.5036 -1.7980 39 1 8.5691 2.8460 -0.9257 40 1 7.8078 4.4355 -0.5818 41 1 7.7668 0.8559 0.7079 42 1 9.3207 1.6797 0.9852 43 1 8.6911 0.3439 2.9657 44 1 7.1399 1.2108 3.0705 45 1 9.2930 2.8385 5.5494 46 1 7.9044 1.7445 5.3405 47 1 9.6062 0.4613 8.3442 48 1 8.6309 4.3992 3.9929 49 1 7.1053 3.5442 3.6614 50 1 9.2836 4.1850 1.6198 51 1 7.7060 4.9982 1.7565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:21 Heat of formation + Delta-G solvation = -140.917879 kcal Electronic energy + Delta-G solvation = -31128.081580 eV Core-core repulsion = 27026.320142 eV Total energy + Delta-G solvation = -4101.761438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.33424 -41.63460 -39.03004 -37.87444 -37.55000 -36.28355 -34.90067 -33.52139 -31.83845 -30.80539 -28.78002 -28.75767 -27.59386 -26.42948 -24.87230 -24.25645 -23.57691 -22.27918 -21.89672 -21.13580 -19.52801 -18.86756 -18.46725 -18.06703 -17.52475 -17.32528 -17.05076 -16.72533 -16.33018 -15.96564 -15.74163 -15.32808 -15.16530 -15.02473 -14.77535 -14.45425 -14.43212 -14.11712 -14.01564 -13.70944 -13.63162 -13.47713 -13.41139 -13.15034 -13.03693 -12.86775 -12.70776 -12.64550 -12.53885 -12.40419 -12.30466 -12.16305 -12.00131 -11.96337 -11.87993 -11.54775 -11.51828 -11.18419 -10.95562 -10.64652 -10.48064 -9.72041 -8.94451 -8.20154 -6.32053 1.00882 1.39997 1.41928 1.45201 1.52962 1.62435 2.15610 2.40430 3.11148 3.26087 3.43495 3.46748 3.55321 3.71137 3.77833 3.81788 4.05619 4.11250 4.14268 4.23884 4.26551 4.35630 4.40189 4.45990 4.57166 4.63592 4.64384 4.66176 4.68231 4.69136 4.83808 4.87191 4.90277 4.93436 4.99419 5.07217 5.13505 5.16938 5.20220 5.23698 5.26600 5.31115 5.36439 5.41477 5.60937 5.65863 6.04792 6.11381 6.36114 6.55726 6.66034 6.84907 7.21147 7.37922 8.91662 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012414 B = 0.002958 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.967983 B = 9463.168811 C =10646.870569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.535 6.535 5 C -0.101 4.101 6 H 0.092 0.908 7 C -0.138 4.138 8 C 0.147 3.853 9 N -0.613 5.613 10 C 0.094 3.906 11 C -0.111 4.111 12 C -0.090 4.090 13 C -0.081 4.081 14 C 0.061 3.939 15 N -0.529 5.529 16 C 0.210 3.790 17 C -0.521 4.521 18 H 0.070 0.930 19 C -0.006 4.006 20 N -0.941 5.941 21 Si 0.977 3.023 22 H -0.262 1.262 23 H -0.285 1.285 24 H -0.265 1.265 25 C 0.039 3.961 26 C -0.080 4.080 27 C 0.515 3.485 28 O -0.570 6.570 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.062 0.938 44 H -0.004 1.004 45 H -0.002 1.002 46 H -0.058 1.058 47 H 0.264 0.736 48 H 0.052 0.948 49 H 0.019 0.981 50 H 0.096 0.904 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.704 0.901 -28.079 30.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.121 4.121 6 H 0.110 0.890 7 C -0.195 4.195 8 C 0.024 3.976 9 N -0.346 5.346 10 C -0.026 4.026 11 C -0.149 4.149 12 C -0.094 4.094 13 C -0.118 4.118 14 C -0.068 4.068 15 N -0.253 5.253 16 C 0.083 3.917 17 C -0.559 4.559 18 H 0.088 0.912 19 C -0.203 4.203 20 N -0.581 5.581 21 Si 0.801 3.199 22 H -0.186 1.186 23 H -0.210 1.210 24 H -0.190 1.190 25 C -0.090 4.090 26 C -0.118 4.118 27 C 0.304 3.696 28 O -0.449 6.449 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.150 0.850 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.141 0.859 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.119 0.881 43 H 0.081 0.919 44 H 0.014 0.986 45 H 0.016 0.984 46 H -0.040 1.040 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.038 0.962 50 H 0.115 0.885 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.839 1.228 -27.534 29.616 hybrid contribution -1.201 -0.531 2.033 2.421 sum -12.040 0.696 -25.501 28.209 Atomic orbital electron populations 1.23573 0.74651 1.05795 1.02583 1.86506 1.25116 1.32694 1.83467 1.23859 0.92158 0.81298 0.71043 1.90658 1.67908 1.37153 1.46741 1.21510 0.86661 0.99987 1.03986 0.89012 1.21878 1.02897 1.00928 0.93755 1.21084 0.79008 0.93354 1.04157 1.48390 1.05877 1.72541 1.07823 1.22628 0.88162 1.03927 0.87899 1.22815 0.98430 1.03787 0.89843 1.21129 0.90819 0.98111 0.99321 1.21435 1.02398 0.94533 0.93472 1.21988 0.94700 0.95257 0.94808 1.62047 1.51338 1.02373 1.09541 1.19309 0.92703 0.95218 0.84424 1.21439 1.27381 1.13621 0.93452 0.91178 1.26080 0.97970 1.00856 0.95387 1.70135 1.45344 1.43265 0.99386 0.85323 0.79117 0.78516 0.76980 1.18645 1.21027 1.18974 1.22251 0.96275 0.91894 0.98558 1.21353 1.02302 0.96514 0.91611 1.21318 0.90703 0.74084 0.83538 1.90704 1.75233 1.51451 1.27477 0.92591 0.91158 0.85049 0.90817 0.90138 0.89334 0.92573 0.86757 0.88464 0.87225 0.85926 0.88337 0.89559 0.88122 0.91907 0.98603 0.98430 1.04003 0.92744 0.92924 0.96234 0.88525 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -7.17 10.47 -51.34 -0.54 -7.70 16 3 C 0.47 10.55 7.26 71.24 0.52 11.07 16 4 O -0.53 -14.50 15.67 21.99 0.34 -14.16 16 5 C -0.10 -1.95 3.04 -11.54 -0.04 -1.99 16 6 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 7 C -0.14 -1.57 8.80 71.98 0.63 -0.94 16 8 C 0.15 2.97 4.70 86.38 0.41 3.38 16 9 N -0.61 -12.20 2.71 -818.08 -2.22 -14.42 16 10 C 0.09 0.91 6.69 86.86 0.58 1.49 16 11 C -0.11 -1.28 6.22 31.60 0.20 -1.08 16 12 C -0.09 -2.18 0.55 -52.75 -0.03 -2.21 16 13 C -0.08 -2.18 4.77 30.49 0.15 -2.04 16 14 C 0.06 2.56 5.08 86.36 0.44 3.00 16 15 N -0.53 -25.07 4.63 -900.46 -4.17 -29.25 16 16 C 0.21 12.47 4.72 85.56 0.40 12.88 16 17 C -0.52 -31.18 8.42 25.60 0.22 -30.97 16 18 H 0.07 3.99 7.12 -2.91 -0.02 3.97 16 19 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 20 N -0.94 -60.29 13.29 21.45 0.28 -60.01 16 21 Si 0.98 45.67 29.54 68.60 2.03 47.70 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 25 C 0.04 1.62 5.24 86.36 0.45 2.07 16 26 C -0.08 -2.28 4.78 30.49 0.15 -2.14 16 27 C 0.51 15.33 6.33 87.72 0.55 15.89 16 28 O -0.57 -24.04 13.85 -3.04 -0.04 -24.08 16 29 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 30 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 31 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.84 8.11 -2.39 -0.02 0.82 16 33 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.09 0.82 5.44 -2.39 -0.01 0.81 16 35 H 0.06 1.55 7.75 -2.39 -0.02 1.53 16 36 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 0.56 6.18 -2.39 -0.01 0.54 16 38 H 0.11 0.47 8.14 -2.39 -0.02 0.46 16 39 H 0.12 0.81 7.87 -2.38 -0.02 0.80 16 40 H 0.10 0.91 7.89 -2.38 -0.02 0.89 16 41 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.06 2.83 6.68 -2.39 -0.02 2.81 16 44 H 0.00 -0.21 6.68 -2.38 -0.02 -0.23 16 45 H 0.00 -0.15 7.98 -2.38 -0.02 -0.17 16 46 H -0.06 -3.88 8.13 -2.38 -0.02 -3.90 16 47 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 48 H 0.05 2.24 8.01 -2.39 -0.02 2.22 16 49 H 0.02 0.95 5.78 -2.39 -0.01 0.93 16 50 H 0.10 2.42 8.14 -2.39 -0.02 2.41 16 51 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -86.74 395.56 2.88 -83.86 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.91 Total: 7.95 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 6.29 Total: 10.10 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -6.11 Total: -103.68 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -0.24 Total: -45.94 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -86.74 2.88 -83.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.058 kcal (2) G-P(sol) polarization free energy of solvation -86.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds