Wall clock time and date at job start Tue Mar 31 2020 21:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00040 * 2 1 4 4 O 1.20822 * 120.00332 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99942 * 180.27394 * 3 2 1 6 6 H 1.09000 * 109.46966 * 299.72502 * 5 3 2 7 7 C 1.52999 * 109.47159 * 59.72052 * 5 3 2 8 8 C 1.52993 * 109.47397 * 179.72302 * 5 3 2 9 9 N 1.46503 * 109.47510 * 175.00096 * 8 5 3 10 10 C 1.46906 * 124.35474 * 90.00003 * 9 8 5 11 11 C 1.53848 * 105.35137 * 196.41140 * 10 9 8 12 12 C 1.53958 * 102.44886 * 335.27789 * 11 10 9 13 13 C 1.34504 * 124.34792 * 269.70000 * 9 8 5 14 14 O 1.21275 * 124.94835 * 359.64410 * 13 9 8 15 15 C 1.52240 * 110.58066 * 93.11319 * 11 10 9 16 16 C 1.53238 * 109.41954 * 180.72535 * 15 11 10 17 17 C 1.53141 * 109.05983 * 303.57047 * 16 15 11 18 18 C 1.53034 * 109.34434 * 58.33679 * 17 16 15 19 19 N 1.45964 * 110.73781 * 217.17721 * 11 10 9 20 20 C 1.46901 * 110.99989 * 52.66947 * 19 11 10 21 21 C 1.50701 * 109.47373 * 175.92496 * 20 19 11 22 22 H 1.08002 * 120.00021 * 5.15944 * 21 20 19 23 23 C 1.37871 * 120.00090 * 185.16552 * 21 20 19 24 24 N 1.31516 * 120.00148 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00008 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46983 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46902 * 119.99873 * 25 23 21 28 28 H 1.48492 * 109.47366 * 240.00008 * 25 23 21 29 29 H 1.09001 * 109.47343 * 300.00124 * 1 2 3 30 30 H 1.08998 * 109.46923 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47294 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46814 * 60.00357 * 7 5 3 33 33 H 1.09001 * 109.47199 * 180.02562 * 7 5 3 34 34 H 1.08992 * 109.47502 * 300.00233 * 7 5 3 35 35 H 1.09007 * 109.47268 * 295.00388 * 8 5 3 36 36 H 1.09003 * 109.47148 * 54.99736 * 8 5 3 37 37 H 1.09003 * 110.26858 * 315.38296 * 10 9 8 38 38 H 1.09004 * 110.27017 * 77.35306 * 10 9 8 39 39 H 1.09003 * 110.50675 * 142.78267 * 12 11 10 40 40 H 1.09005 * 110.50908 * 265.34412 * 12 11 10 41 41 H 1.09004 * 109.47456 * 300.70765 * 15 11 10 42 42 H 1.08993 * 109.47973 * 60.73310 * 15 11 10 43 43 H 1.09000 * 109.53831 * 183.69889 * 16 15 11 44 44 H 1.08999 * 109.61354 * 63.48744 * 16 15 11 45 45 H 1.09004 * 109.49539 * 298.37608 * 17 16 15 46 46 H 1.08998 * 109.51651 * 178.31094 * 17 16 15 47 47 H 1.08999 * 109.47030 * 180.16472 * 18 17 16 48 48 H 1.08997 * 109.47202 * 60.16881 * 18 17 16 49 49 H 1.08998 * 109.47193 * 295.92219 * 20 19 11 50 50 H 1.08995 * 109.47072 * 55.92431 * 20 19 11 51 51 H 0.97001 * 120.00031 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0062 6 1 3.9596 0.7830 0.8835 7 6 4.1083 0.5779 -1.2558 8 6 4.0002 2.7419 -0.0119 9 7 5.4586 2.8204 0.1024 10 6 6.3804 2.8317 -1.0414 11 6 7.7632 2.5013 -0.4534 12 6 7.6169 2.9513 1.0117 13 6 6.1254 2.8973 1.2680 14 8 5.6077 2.9174 2.3645 15 6 8.0330 1.0049 -0.5285 16 6 9.4069 0.7038 0.0797 17 6 10.4691 1.5307 -0.6505 18 6 10.1265 3.0172 -0.5285 19 7 8.8076 3.2668 -1.1270 20 6 8.4921 4.7015 -1.1264 21 6 9.6360 5.4677 -1.7392 22 1 10.4726 4.9370 -2.1691 23 6 9.6145 6.8462 -1.7510 24 7 8.5956 7.4926 -1.2279 25 14 11.0328 7.7959 -2.5100 26 1 12.0472 6.8421 -3.0263 27 1 10.5265 8.6324 -3.6278 28 1 11.6519 8.6682 -1.4801 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.7151 1.0697 -2.1455 33 1 5.1969 0.6345 -1.2601 34 1 3.7993 -0.4673 -1.2518 35 1 3.6829 3.2111 -0.9433 36 1 3.5413 3.2598 0.8304 37 1 6.0886 2.0742 -1.7689 38 1 6.3923 3.8171 -1.5072 39 1 8.1462 2.2679 1.6757 40 1 7.9880 3.9685 1.1376 41 1 7.2639 0.4686 0.0275 42 1 8.0184 0.6847 -1.5702 43 1 9.6305 -0.3572 -0.0322 44 1 9.4043 0.9662 1.1376 45 1 10.4905 1.2476 -1.7029 46 1 11.4458 1.3448 -0.2039 47 1 10.8797 3.6077 -1.0501 48 1 10.1074 3.3005 0.5238 49 1 7.5863 4.8747 -1.7074 50 1 8.3365 5.0389 -0.1017 51 1 8.5807 8.4624 -1.2359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031134.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:54 Heat of formation + Delta-G solvation = -109.916483 kcal Electronic energy + Delta-G solvation = -31614.586111 eV Core-core repulsion = 27514.168994 eV Total energy + Delta-G solvation = -4100.417117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.15740 -40.59796 -38.22932 -36.91594 -35.99791 -34.20505 -33.83973 -31.99135 -31.23226 -28.49094 -27.92322 -27.30463 -26.92614 -25.10106 -24.06867 -23.77257 -21.63291 -21.07050 -20.53632 -19.15665 -18.22911 -17.82499 -17.10890 -16.80427 -16.56860 -16.12924 -15.67201 -15.43606 -14.92622 -14.54904 -14.40374 -14.19941 -13.94610 -13.86139 -13.71875 -13.52645 -13.31527 -12.88827 -12.67577 -12.56860 -12.43736 -12.33406 -12.20882 -11.92961 -11.79466 -11.56717 -11.44326 -11.37801 -11.12998 -11.04420 -10.92466 -10.75899 -10.72290 -10.58262 -10.29650 -10.22807 -9.99395 -9.70875 -9.51455 -9.14512 -8.59381 -8.41412 -7.32367 -6.11962 -4.14015 1.99572 2.35203 2.87761 3.24681 3.25929 3.34202 3.37164 4.30670 4.40657 4.45378 4.61449 4.69984 4.72208 4.83441 4.91400 4.93978 5.03998 5.08733 5.12380 5.23765 5.25165 5.30218 5.37173 5.46010 5.49346 5.55107 5.56024 5.75262 5.80332 5.85355 5.92029 5.96364 6.03681 6.07158 6.15359 6.16063 6.22789 6.23954 6.38232 6.38719 6.68409 6.70396 6.74099 7.19174 7.27721 7.34456 7.51345 7.68699 7.93715 8.06865 8.41598 8.43267 8.93585 9.50986 10.98667 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.003221 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.990149 B = 8690.013333 C = 9736.554192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.504 6.504 5 C -0.100 4.100 6 H 0.112 0.888 7 C -0.149 4.149 8 C 0.143 3.857 9 N -0.614 5.614 10 C 0.098 3.902 11 C 0.110 3.890 12 C -0.191 4.191 13 C 0.526 3.474 14 O -0.542 6.542 15 C -0.099 4.099 16 C -0.120 4.120 17 C -0.119 4.119 18 C 0.064 3.936 19 N -0.520 5.520 20 C 0.185 3.815 21 C -0.515 4.515 22 H 0.067 0.933 23 C 0.058 3.942 24 N -0.893 5.893 25 Si 0.896 3.104 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.285 1.285 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.092 0.908 48 H 0.025 0.975 49 H 0.035 0.965 50 H 0.002 0.998 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.202 -17.350 0.179 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.313 3.687 4 O -0.391 6.391 5 C -0.121 4.121 6 H 0.130 0.870 7 C -0.206 4.206 8 C 0.020 3.980 9 N -0.348 5.348 10 C -0.024 4.024 11 C 0.018 3.982 12 C -0.233 4.233 13 C 0.315 3.685 14 O -0.420 6.420 15 C -0.137 4.137 16 C -0.157 4.157 17 C -0.157 4.157 18 C -0.064 4.064 19 N -0.243 5.243 20 C 0.060 3.940 21 C -0.554 4.554 22 H 0.085 0.915 23 C -0.144 4.144 24 N -0.532 5.532 25 Si 0.724 3.276 26 H -0.196 1.196 27 H -0.210 1.210 28 H -0.211 1.211 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.135 0.865 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.110 0.890 48 H 0.043 0.957 49 H 0.053 0.947 50 H 0.019 0.981 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.821 -17.005 0.269 19.159 hybrid contribution 0.316 1.069 0.484 1.216 sum -8.505 -15.935 0.752 18.079 Atomic orbital electron populations 1.23272 0.76380 1.03641 1.02635 1.86506 1.23376 1.33478 1.84087 1.23673 0.91739 0.81336 0.71939 1.90688 1.67182 1.36262 1.45009 1.21529 0.87091 1.00412 1.03044 0.86985 1.21925 1.02798 1.00688 0.95155 1.21097 0.79422 0.92743 1.04736 1.48269 1.05464 1.73137 1.07904 1.22556 0.87528 1.04271 0.88046 1.21249 0.92204 0.94779 0.89924 1.23170 0.93602 1.05992 1.00521 1.21025 0.90020 0.74055 0.83416 1.90670 1.74872 1.51105 1.25342 1.21441 0.97036 0.93514 1.01677 1.21614 0.95136 0.99354 0.99614 1.21663 0.97355 0.95909 1.00790 1.22006 0.92487 0.94533 0.97343 1.61836 0.99924 1.11088 1.51486 1.19917 0.97604 0.80351 0.96090 1.21201 1.05260 0.90736 1.38189 0.91517 1.24984 0.96128 0.97819 0.95460 1.69959 1.30098 1.08121 1.45032 0.86471 0.82282 0.79931 0.78923 1.19630 1.21009 1.21113 0.91874 0.91836 0.88112 0.91792 0.90039 0.91206 0.89236 0.89059 0.90029 0.88546 0.88465 0.86528 0.92227 0.90749 0.92308 0.92341 0.91429 0.92359 0.88981 0.95678 0.94729 0.98058 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.76 10.46 -39.25 -0.41 -4.17 16 3 C 0.47 5.72 7.26 36.01 0.26 5.98 16 4 O -0.50 -7.44 15.67 -18.75 -0.29 -7.73 16 5 C -0.10 -1.13 3.03 -91.77 -0.28 -1.41 16 6 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 7 C -0.15 -1.35 8.51 37.16 0.32 -1.04 16 8 C 0.14 1.94 4.71 -4.04 -0.02 1.92 16 9 N -0.61 -9.22 2.71 -172.60 -0.47 -9.69 16 10 C 0.10 1.45 5.81 -3.38 -0.02 1.43 16 11 C 0.11 1.69 0.61 -131.56 -0.08 1.61 16 12 C -0.19 -3.19 4.57 -27.02 -0.12 -3.32 16 13 C 0.53 9.25 8.04 -10.75 -0.09 9.17 16 14 O -0.54 -11.15 17.59 5.56 0.10 -11.05 16 15 C -0.10 -1.22 4.75 -27.00 -0.13 -1.35 16 16 C -0.12 -1.43 5.80 -26.54 -0.15 -1.59 16 17 C -0.12 -1.60 6.07 -26.64 -0.16 -1.77 16 18 C 0.06 1.11 4.94 -3.77 -0.02 1.09 16 19 N -0.52 -9.59 4.60 -220.37 -1.01 -10.60 16 20 C 0.18 4.28 4.18 -4.98 -0.02 4.26 16 21 C -0.52 -13.25 8.30 -34.44 -0.29 -13.53 16 22 H 0.07 1.69 6.30 -52.49 -0.33 1.36 16 23 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 24 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 25 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.75 5.64 -51.93 -0.29 0.46 16 34 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.41 7.73 -51.93 -0.40 1.01 16 37 H 0.08 0.99 5.62 -51.93 -0.29 0.70 16 38 H 0.10 1.68 5.37 -51.93 -0.28 1.40 16 39 H 0.10 1.49 6.24 -51.93 -0.32 1.16 16 40 H 0.12 2.28 5.63 -51.93 -0.29 1.99 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.72 6.57 -51.93 -0.34 0.37 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 1.77 5.91 -51.93 -0.31 1.47 16 48 H 0.02 0.45 7.21 -51.93 -0.37 0.07 16 49 H 0.03 0.86 5.91 -51.93 -0.31 0.55 16 50 H 0.00 0.05 5.88 -51.93 -0.31 -0.26 16 51 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -31.05 387.74 -8.41 -39.46 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -8.05 Total: 2.67 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 0.17 Total: 4.25 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.75 Total: -44.92 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.61 Total: -22.95 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.05 -8.41 -39.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031134.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.460 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds