Wall clock time and date at job start Tue Mar 31 2020 21:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00040 * 2 1 4 4 O 1.20822 * 120.00332 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99942 * 180.27394 * 3 2 1 6 6 H 1.09000 * 109.46966 * 299.72502 * 5 3 2 7 7 C 1.52999 * 109.47159 * 59.72052 * 5 3 2 8 8 C 1.52993 * 109.47397 * 179.72302 * 5 3 2 9 9 N 1.46503 * 109.47510 * 175.00096 * 8 5 3 10 10 C 1.46906 * 124.35474 * 90.00003 * 9 8 5 11 11 C 1.53848 * 105.35137 * 196.41140 * 10 9 8 12 12 C 1.53958 * 102.44886 * 335.27789 * 11 10 9 13 13 C 1.34504 * 124.34792 * 269.70000 * 9 8 5 14 14 O 1.21275 * 124.94835 * 359.64410 * 13 9 8 15 15 C 1.52240 * 110.58066 * 93.11319 * 11 10 9 16 16 C 1.53238 * 109.41954 * 180.72535 * 15 11 10 17 17 C 1.53141 * 109.05983 * 303.57047 * 16 15 11 18 18 C 1.53034 * 109.34434 * 58.33679 * 17 16 15 19 19 N 1.45964 * 110.73781 * 217.17721 * 11 10 9 20 20 C 1.46901 * 110.99989 * 52.66947 * 19 11 10 21 21 C 1.50701 * 109.47373 * 175.92496 * 20 19 11 22 22 H 1.08002 * 120.00021 * 5.15944 * 21 20 19 23 23 C 1.37871 * 120.00090 * 185.16552 * 21 20 19 24 24 N 1.31516 * 120.00148 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00008 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46983 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46902 * 119.99873 * 25 23 21 28 28 H 1.48492 * 109.47366 * 240.00008 * 25 23 21 29 29 H 1.09001 * 109.47343 * 300.00124 * 1 2 3 30 30 H 1.08998 * 109.46923 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47294 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46814 * 60.00357 * 7 5 3 33 33 H 1.09001 * 109.47199 * 180.02562 * 7 5 3 34 34 H 1.08992 * 109.47502 * 300.00233 * 7 5 3 35 35 H 1.09007 * 109.47268 * 295.00388 * 8 5 3 36 36 H 1.09003 * 109.47148 * 54.99736 * 8 5 3 37 37 H 1.09003 * 110.26858 * 315.38296 * 10 9 8 38 38 H 1.09004 * 110.27017 * 77.35306 * 10 9 8 39 39 H 1.09003 * 110.50675 * 142.78267 * 12 11 10 40 40 H 1.09005 * 110.50908 * 265.34412 * 12 11 10 41 41 H 1.09004 * 109.47456 * 300.70765 * 15 11 10 42 42 H 1.08993 * 109.47973 * 60.73310 * 15 11 10 43 43 H 1.09000 * 109.53831 * 183.69889 * 16 15 11 44 44 H 1.08999 * 109.61354 * 63.48744 * 16 15 11 45 45 H 1.09004 * 109.49539 * 298.37608 * 17 16 15 46 46 H 1.08998 * 109.51651 * 178.31094 * 17 16 15 47 47 H 1.08999 * 109.47030 * 180.16472 * 18 17 16 48 48 H 1.08997 * 109.47202 * 60.16881 * 18 17 16 49 49 H 1.08998 * 109.47193 * 295.92219 * 20 19 11 50 50 H 1.08995 * 109.47072 * 55.92431 * 20 19 11 51 51 H 0.97001 * 120.00031 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0062 6 1 3.9596 0.7830 0.8835 7 6 4.1083 0.5779 -1.2558 8 6 4.0002 2.7419 -0.0119 9 7 5.4586 2.8204 0.1024 10 6 6.3804 2.8317 -1.0414 11 6 7.7632 2.5013 -0.4534 12 6 7.6169 2.9513 1.0117 13 6 6.1254 2.8973 1.2680 14 8 5.6077 2.9174 2.3645 15 6 8.0330 1.0049 -0.5285 16 6 9.4069 0.7038 0.0797 17 6 10.4691 1.5307 -0.6505 18 6 10.1265 3.0172 -0.5285 19 7 8.8076 3.2668 -1.1270 20 6 8.4921 4.7015 -1.1264 21 6 9.6360 5.4677 -1.7392 22 1 10.4726 4.9370 -2.1691 23 6 9.6145 6.8462 -1.7510 24 7 8.5956 7.4926 -1.2279 25 14 11.0328 7.7959 -2.5100 26 1 12.0472 6.8421 -3.0263 27 1 10.5265 8.6324 -3.6278 28 1 11.6519 8.6682 -1.4801 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.7151 1.0697 -2.1455 33 1 5.1969 0.6345 -1.2601 34 1 3.7993 -0.4673 -1.2518 35 1 3.6829 3.2111 -0.9433 36 1 3.5413 3.2598 0.8304 37 1 6.0886 2.0742 -1.7689 38 1 6.3923 3.8171 -1.5072 39 1 8.1462 2.2679 1.6757 40 1 7.9880 3.9685 1.1376 41 1 7.2639 0.4686 0.0275 42 1 8.0184 0.6847 -1.5702 43 1 9.6305 -0.3572 -0.0322 44 1 9.4043 0.9662 1.1376 45 1 10.4905 1.2476 -1.7029 46 1 11.4458 1.3448 -0.2039 47 1 10.8797 3.6077 -1.0501 48 1 10.1074 3.3005 0.5238 49 1 7.5863 4.8747 -1.7074 50 1 8.3365 5.0389 -0.1017 51 1 8.5807 8.4624 -1.2359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031134.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:54 Heat of formation + Delta-G solvation = -129.496819 kcal Electronic energy + Delta-G solvation = -31615.435178 eV Core-core repulsion = 27514.168994 eV Total energy + Delta-G solvation = -4101.266184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.41961 -41.60949 -39.60429 -37.90087 -37.23004 -35.52388 -35.29012 -33.67499 -32.43631 -29.74270 -28.79710 -28.68200 -28.31293 -26.26788 -25.60165 -24.77293 -23.17304 -22.30434 -21.54229 -20.47368 -19.46762 -18.82383 -18.60641 -18.03081 -17.55500 -17.49483 -17.05092 -16.80441 -16.37092 -15.86662 -15.72625 -15.43415 -15.31202 -15.04218 -14.90764 -14.66377 -14.28036 -14.11650 -13.99318 -13.79878 -13.73724 -13.41373 -13.34841 -13.21828 -13.04009 -12.78477 -12.77511 -12.56964 -12.45933 -12.37869 -12.24322 -12.03233 -11.94160 -11.84006 -11.57474 -11.47267 -11.40626 -11.05463 -10.94109 -10.84529 -10.58242 -9.78212 -8.92104 -8.18842 -6.26723 1.04965 1.34805 1.41385 1.43354 1.51262 1.55081 2.08830 2.41194 3.03011 3.16120 3.40660 3.46529 3.61519 3.76142 3.81716 3.84735 3.89957 4.13197 4.19501 4.28768 4.30781 4.33656 4.34442 4.42896 4.49175 4.52178 4.63922 4.69184 4.69674 4.77171 4.78794 4.86545 4.93505 5.03377 5.04688 5.11259 5.20153 5.22430 5.30506 5.32761 5.35218 5.39769 5.44592 5.53300 5.64814 5.69783 5.94305 6.08909 6.34120 6.59990 6.72152 6.92191 7.01597 7.42950 8.92284 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.003221 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.990149 B = 8690.013333 C = 9736.554192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.475 3.525 4 O -0.538 6.538 5 C -0.092 4.092 6 H 0.113 0.887 7 C -0.143 4.143 8 C 0.140 3.860 9 N -0.603 5.603 10 C 0.101 3.899 11 C 0.111 3.889 12 C -0.185 4.185 13 C 0.522 3.478 14 O -0.577 6.577 15 C -0.093 4.093 16 C -0.117 4.117 17 C -0.110 4.110 18 C 0.062 3.938 19 N -0.516 5.516 20 C 0.200 3.800 21 C -0.520 4.520 22 H 0.070 0.930 23 C 0.003 3.997 24 N -0.934 5.934 25 Si 0.961 3.039 26 H -0.259 1.259 27 H -0.282 1.282 28 H -0.285 1.285 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.135 0.865 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.011 0.989 49 H 0.016 0.984 50 H -0.031 1.031 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.605 -20.738 -1.160 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.318 3.682 4 O -0.427 6.427 5 C -0.112 4.112 6 H 0.131 0.869 7 C -0.200 4.200 8 C 0.018 3.982 9 N -0.335 5.335 10 C -0.021 4.021 11 C 0.020 3.980 12 C -0.227 4.227 13 C 0.311 3.689 14 O -0.458 6.458 15 C -0.131 4.131 16 C -0.154 4.154 17 C -0.147 4.147 18 C -0.066 4.066 19 N -0.239 5.239 20 C 0.074 3.926 21 C -0.559 4.559 22 H 0.088 0.912 23 C -0.195 4.195 24 N -0.574 5.574 25 Si 0.787 3.213 26 H -0.183 1.183 27 H -0.208 1.208 28 H -0.212 1.212 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.029 0.971 49 H 0.034 0.966 50 H -0.013 1.013 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.219 -20.439 -1.103 22.057 hybrid contribution 0.052 2.112 0.926 2.307 sum -8.166 -18.327 -0.177 20.065 Atomic orbital electron populations 1.23583 0.74685 1.05876 1.02491 1.86491 1.25004 1.32217 1.83480 1.23769 0.91970 0.81382 0.71055 1.90682 1.67922 1.37421 1.46723 1.21395 0.86845 0.98447 1.04523 0.86912 1.21930 1.02814 1.01479 0.93789 1.21152 0.78187 0.94818 1.04037 1.48249 1.06158 1.71826 1.07234 1.22562 0.87438 1.03785 0.88276 1.21461 0.91446 0.96737 0.88396 1.23085 0.93195 1.04270 1.02125 1.21159 0.90451 0.73841 0.83495 1.90644 1.75484 1.52954 1.26686 1.21479 0.98101 0.90262 1.03267 1.21629 0.93990 1.00853 0.98973 1.21600 0.98900 0.92570 1.01679 1.22033 0.91092 0.97535 0.95913 1.61774 1.01433 1.08314 1.52377 1.19535 0.96117 0.83366 0.93541 1.21588 1.05787 0.91173 1.37314 0.91161 1.25839 0.98533 0.99051 0.96095 1.70099 1.32243 1.08215 1.46868 0.85444 0.79414 0.78544 0.77897 1.18251 1.20837 1.21162 0.92357 0.91748 0.84694 0.91264 0.89655 0.89359 0.88459 0.91565 0.86292 0.91651 0.86909 0.90141 0.90263 0.89011 0.89085 0.92741 0.90868 0.90595 0.91436 0.97051 0.96622 1.01327 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.77 10.46 -51.37 -0.54 -7.31 16 3 C 0.47 11.07 7.26 71.24 0.52 11.59 16 4 O -0.54 -15.91 15.67 21.98 0.34 -15.57 16 5 C -0.09 -1.94 3.03 -11.54 -0.04 -1.98 16 6 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 7 C -0.14 -2.15 8.51 71.98 0.61 -1.54 16 8 C 0.14 3.83 4.71 86.38 0.41 4.24 16 9 N -0.60 -18.16 2.71 -818.53 -2.22 -20.38 16 10 C 0.10 2.93 5.81 86.59 0.50 3.43 16 11 C 0.11 3.32 0.61 4.06 0.00 3.32 16 12 C -0.19 -6.31 4.57 30.40 0.14 -6.17 16 13 C 0.52 18.76 8.04 87.93 0.71 19.46 16 14 O -0.58 -24.49 17.59 -3.01 -0.05 -24.54 16 15 C -0.09 -1.97 4.75 30.42 0.14 -1.83 16 16 C -0.12 -2.34 5.80 30.72 0.18 -2.16 16 17 C -0.11 -2.64 6.07 30.65 0.19 -2.45 16 18 C 0.06 2.13 4.94 86.30 0.43 2.55 16 19 N -0.52 -19.09 4.60 -851.11 -3.91 -23.00 16 20 C 0.20 9.70 4.18 85.56 0.36 10.06 16 21 C -0.52 -27.47 8.30 25.60 0.21 -27.26 16 22 H 0.07 3.59 6.30 -2.91 -0.02 3.57 16 23 C 0.00 0.16 5.46 84.65 0.46 0.62 16 24 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 25 Si 0.96 43.07 29.54 68.60 2.03 45.09 16 26 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 28 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 29 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 30 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 31 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.22 5.64 -2.39 -0.01 1.21 16 34 H 0.09 1.05 8.11 -2.39 -0.02 1.04 16 35 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.07 2.16 7.73 -2.39 -0.02 2.14 16 37 H 0.12 2.56 5.62 -2.39 -0.01 2.55 16 38 H 0.07 2.36 5.37 -2.38 -0.01 2.35 16 39 H 0.11 3.42 6.24 -2.39 -0.01 3.40 16 40 H 0.08 3.39 5.63 -2.38 -0.01 3.38 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.05 1.16 6.57 -2.39 -0.02 1.14 16 45 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.07 2.62 5.91 -2.39 -0.01 2.61 16 48 H 0.01 0.41 7.21 -2.39 -0.02 0.40 16 49 H 0.02 0.83 5.91 -2.39 -0.01 0.81 16 50 H -0.03 -1.68 5.88 -2.39 -0.01 -1.70 16 51 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -71.17 387.74 2.88 -68.29 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.94 Total: 18.84 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 6.02 Total: 13.43 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -5.85 Total: -98.24 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -0.25 Total: -47.42 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -71.17 2.88 -68.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031134.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.210 kcal (2) G-P(sol) polarization free energy of solvation -71.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds