Wall clock time and date at job start Tue Mar 31 2020 21:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 116.99985 * 2 1 4 4 O 1.20825 * 120.00028 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00014 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.46960 * 300.00287 * 5 3 2 7 7 C 1.52999 * 109.46867 * 59.99998 * 5 3 2 8 8 C 1.53003 * 109.47034 * 179.97438 * 5 3 2 9 9 N 1.46509 * 109.46825 * 174.99982 * 8 5 3 10 10 C 1.46911 * 124.35119 * 269.72628 * 9 8 5 11 11 C 1.53996 * 105.26875 * 163.44411 * 10 9 8 12 12 C 1.53993 * 102.36824 * 25.06909 * 11 10 9 13 13 C 1.34496 * 124.34887 * 90.02769 * 9 8 5 14 14 O 1.21283 * 124.94719 * 0.38756 * 13 9 8 15 15 C 1.52232 * 110.85463 * 267.21628 * 11 10 9 16 16 C 1.53247 * 109.42015 * 293.33423 * 15 11 10 17 17 C 1.53133 * 109.05974 * 303.57546 * 16 15 11 18 18 C 1.53038 * 109.34773 * 58.33591 * 17 16 15 19 19 N 1.45966 * 110.65416 * 143.01142 * 11 10 9 20 20 C 1.46903 * 110.99808 * 300.08109 * 19 11 10 21 21 C 1.50700 * 109.46765 * 184.64683 * 20 19 11 22 22 H 1.08007 * 120.00105 * 0.02562 * 21 20 19 23 23 C 1.37883 * 119.99734 * 179.97438 * 21 20 19 24 24 N 1.31509 * 119.99957 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99622 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47226 * 60.00526 * 25 23 21 27 27 H 1.48504 * 109.46970 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47107 * 299.99995 * 25 23 21 29 29 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46813 * 299.99889 * 1 2 3 31 31 H 1.08996 * 109.47084 * 59.99838 * 1 2 3 32 32 H 1.08999 * 109.47134 * 179.97438 * 7 5 3 33 33 H 1.08997 * 109.47156 * 299.99777 * 7 5 3 34 34 H 1.09004 * 109.47395 * 60.00375 * 7 5 3 35 35 H 1.08997 * 109.47246 * 294.99847 * 8 5 3 36 36 H 1.08995 * 109.47280 * 54.99946 * 8 5 3 37 37 H 1.09000 * 110.26858 * 282.54361 * 10 9 8 38 38 H 1.09001 * 110.27283 * 44.60045 * 10 9 8 39 39 H 1.09003 * 110.50642 * 217.00315 * 12 11 10 40 40 H 1.09003 * 110.50850 * 94.29729 * 12 11 10 41 41 H 1.09002 * 109.48093 * 53.31456 * 15 11 10 42 42 H 1.09000 * 109.48222 * 173.35022 * 15 11 10 43 43 H 1.09002 * 109.53880 * 183.69725 * 16 15 11 44 44 H 1.09003 * 109.60752 * 63.49467 * 16 15 11 45 45 H 1.09000 * 109.49086 * 298.36866 * 17 16 15 46 46 H 1.09007 * 109.49120 * 178.29665 * 17 16 15 47 47 H 1.08995 * 109.47284 * 180.16374 * 18 17 16 48 48 H 1.08999 * 109.47118 * 60.16242 * 18 17 16 49 49 H 1.08995 * 109.47394 * 304.64468 * 20 19 11 50 50 H 1.08995 * 109.47379 * 64.64803 * 20 19 11 51 51 H 0.97003 * 120.00091 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9564 0.7805 0.8891 7 6 4.1129 0.5815 -1.2502 8 6 4.0002 2.7421 -0.0011 9 7 5.4583 2.8202 0.1187 10 6 6.1820 2.9005 1.3947 11 6 7.6404 2.5390 1.0571 12 6 7.7360 2.9118 -0.4340 13 6 6.3059 2.8335 -0.9254 14 8 5.9732 2.7896 -2.0909 15 6 7.8884 1.0496 1.2512 16 6 7.7738 0.7037 2.7397 17 6 8.7554 1.5720 3.5318 18 6 8.4403 3.0489 3.2836 19 7 8.5666 3.3424 1.8491 20 6 8.3778 4.7754 1.5863 21 6 9.4231 5.5646 2.3317 22 1 10.1547 5.0529 2.9395 23 6 9.4460 6.9400 2.2369 24 7 8.5555 7.5630 1.4964 25 14 10.7412 7.9183 3.1615 26 1 12.0927 7.5048 2.7059 27 1 10.5505 9.3669 2.8958 28 1 10.6095 7.6612 4.6181 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 5.2013 0.6389 -1.2509 33 1 3.8038 -0.4637 -1.2503 34 1 3.7228 1.0758 -2.1400 35 1 3.6864 3.2134 -0.9325 36 1 3.5383 3.2578 0.8407 37 1 6.1245 3.9113 1.7984 38 1 5.7720 2.1847 2.1071 39 1 8.3627 2.1967 -0.9670 40 1 8.1250 3.9233 -0.5506 41 1 7.1480 0.4814 0.6880 42 1 8.8875 0.7980 0.8954 43 1 8.0154 -0.3487 2.8891 44 1 6.7574 0.8966 3.0829 45 1 9.7738 1.3579 3.2076 46 1 8.6583 1.3531 4.5953 47 1 9.1397 3.6689 3.8443 48 1 7.4226 3.2631 3.6100 49 1 8.4737 4.9645 0.5171 50 1 7.3860 5.0787 1.9214 51 1 8.5714 8.5306 1.4300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:57 Heat of formation + Delta-G solvation = -111.024472 kcal Electronic energy + Delta-G solvation = -31688.040710 eV Core-core repulsion = 27587.575547 eV Total energy + Delta-G solvation = -4100.465163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.16501 -40.60919 -38.30472 -36.90346 -35.76451 -34.30968 -33.83702 -32.04247 -31.40027 -28.26876 -27.91823 -27.22436 -26.77567 -25.50968 -24.00476 -23.60936 -21.70981 -21.03110 -20.50556 -19.41323 -18.09530 -17.85283 -17.13384 -16.76455 -16.59380 -16.15635 -15.61617 -15.36084 -15.05659 -14.42591 -14.28822 -14.26491 -14.04355 -14.02002 -13.77798 -13.32361 -13.20120 -12.83903 -12.73986 -12.55135 -12.51361 -12.35003 -12.14538 -12.00350 -11.81991 -11.55656 -11.33563 -11.32868 -11.21606 -11.06350 -10.89149 -10.79984 -10.74245 -10.55262 -10.44950 -10.25743 -10.06187 -9.57286 -9.44138 -9.19941 -8.57164 -8.49328 -7.35499 -6.10183 -4.12128 1.96841 2.33713 2.88844 3.25268 3.29121 3.34463 3.36207 4.30490 4.39824 4.46984 4.57117 4.69277 4.77428 4.81548 4.89659 4.94631 5.02451 5.05693 5.10329 5.23271 5.24534 5.26139 5.39082 5.44129 5.52110 5.59313 5.64842 5.69642 5.79727 5.86377 5.94228 5.95118 5.99729 6.05291 6.14045 6.16580 6.18878 6.30462 6.35044 6.37772 6.64533 6.65920 6.68600 7.18597 7.24991 7.29543 7.48952 7.70267 7.97250 8.07112 8.41095 8.44496 8.94335 9.52373 11.00334 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.003174 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.450641 B = 8818.650797 C = 9424.121003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.505 6.505 5 C -0.100 4.100 6 H 0.111 0.889 7 C -0.137 4.137 8 C 0.142 3.858 9 N -0.613 5.613 10 C 0.066 3.934 11 C 0.111 3.889 12 C -0.155 4.155 13 C 0.524 3.476 14 O -0.537 6.537 15 C -0.098 4.098 16 C -0.119 4.119 17 C -0.119 4.119 18 C 0.063 3.937 19 N -0.517 5.517 20 C 0.186 3.814 21 C -0.513 4.513 22 H 0.064 0.936 23 C 0.058 3.942 24 N -0.895 5.895 25 Si 0.897 3.103 26 H -0.276 1.276 27 H -0.288 1.288 28 H -0.277 1.277 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.128 0.872 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.023 0.977 49 H 0.039 0.961 50 H -0.003 1.003 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.086 -17.361 0.632 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.313 3.687 4 O -0.392 6.392 5 C -0.120 4.120 6 H 0.129 0.871 7 C -0.195 4.195 8 C 0.018 3.982 9 N -0.347 5.347 10 C -0.058 4.058 11 C 0.019 3.981 12 C -0.195 4.195 13 C 0.313 3.687 14 O -0.414 6.414 15 C -0.136 4.136 16 C -0.157 4.157 17 C -0.157 4.157 18 C -0.065 4.065 19 N -0.240 5.240 20 C 0.062 3.938 21 C -0.552 4.552 22 H 0.082 0.918 23 C -0.144 4.144 24 N -0.534 5.534 25 Si 0.725 3.275 26 H -0.201 1.201 27 H -0.214 1.214 28 H -0.203 1.203 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.146 0.854 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.107 0.893 48 H 0.041 0.959 49 H 0.057 0.943 50 H 0.014 0.986 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.131 -17.010 -0.185 19.799 hybrid contribution -0.547 1.017 0.870 1.446 sum -10.677 -15.992 0.685 19.241 Atomic orbital electron populations 1.23275 0.76366 1.03661 1.02632 1.86511 1.23382 1.33457 1.84059 1.23692 0.91754 0.81337 0.71930 1.90688 1.67193 1.36274 1.45057 1.21517 0.86994 1.00417 1.03071 0.87142 1.21742 1.02507 0.99996 0.95211 1.21114 0.79621 0.92714 1.04704 1.48247 1.05158 1.73214 1.08045 1.23150 0.93993 1.03118 0.85561 1.21291 0.88726 0.94696 0.93402 1.22678 0.94039 1.06985 0.95802 1.21092 0.88732 0.74065 0.84766 1.90681 1.82224 1.50830 1.17681 1.21432 1.02283 0.93381 0.96539 1.21622 0.99504 0.99246 0.95306 1.21655 0.99812 0.95490 0.98753 1.21994 0.99806 0.94918 0.89751 1.61892 1.47925 1.08812 1.05399 1.19923 0.95961 0.80303 0.97644 1.21081 1.14279 0.90799 1.28994 0.91752 1.24975 0.96019 0.97847 0.95552 1.69935 1.35034 1.09093 1.39297 0.86569 0.82005 0.78796 0.80102 1.20115 1.21383 1.20294 0.88093 0.91858 0.91852 0.90742 0.91623 0.91674 0.89108 0.89452 0.89673 0.90917 0.88117 0.85404 0.92199 0.90600 0.92235 0.92533 0.91279 0.92337 0.89277 0.95920 0.94345 0.98571 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.72 10.47 -39.25 -0.41 -4.13 16 3 C 0.47 5.66 7.25 36.01 0.26 5.92 16 4 O -0.50 -7.36 15.67 -18.75 -0.29 -7.66 16 5 C -0.10 -1.12 3.04 -91.77 -0.28 -1.40 16 6 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 7 C -0.14 -1.56 8.28 37.16 0.31 -1.25 16 8 C 0.14 1.92 4.74 -4.04 -0.02 1.90 16 9 N -0.61 -9.17 2.79 -172.51 -0.48 -9.65 16 10 C 0.07 0.99 5.10 -3.30 -0.02 0.97 16 11 C 0.11 1.71 0.60 -131.46 -0.08 1.63 16 12 C -0.16 -2.57 5.87 -27.01 -0.16 -2.73 16 13 C 0.52 8.92 6.60 -10.76 -0.07 8.84 16 14 O -0.54 -10.40 16.47 5.55 0.09 -10.31 16 15 C -0.10 -1.23 4.76 -27.00 -0.13 -1.36 16 16 C -0.12 -1.36 5.80 -26.53 -0.15 -1.51 16 17 C -0.12 -1.55 6.07 -26.64 -0.16 -1.72 16 18 C 0.06 1.06 5.05 -3.77 -0.02 1.04 16 19 N -0.52 -9.60 4.53 -220.26 -1.00 -10.60 16 20 C 0.19 4.33 4.10 -4.97 -0.02 4.31 16 21 C -0.51 -13.32 8.42 -34.44 -0.29 -13.61 16 22 H 0.06 1.64 6.71 -52.48 -0.35 1.29 16 23 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 24 N -0.89 -25.52 13.29 55.43 0.74 -24.79 16 25 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.07 0.94 6.13 -51.93 -0.32 0.62 16 33 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.38 7.92 -51.93 -0.41 0.96 16 36 H 0.09 1.15 7.96 -51.93 -0.41 0.74 16 37 H 0.09 1.51 5.72 -51.93 -0.30 1.21 16 38 H 0.07 0.93 6.25 -51.93 -0.32 0.60 16 39 H 0.10 1.49 7.88 -51.93 -0.41 1.08 16 40 H 0.13 2.47 5.27 -51.93 -0.27 2.20 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.62 6.58 -51.93 -0.34 0.28 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 47 H 0.09 1.67 6.34 -51.93 -0.33 1.35 16 48 H 0.02 0.38 7.24 -51.93 -0.38 0.00 16 49 H 0.04 0.98 5.50 -51.93 -0.29 0.69 16 50 H 0.00 -0.08 6.15 -51.93 -0.32 -0.40 16 51 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -30.56 389.24 -8.60 -39.17 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -8.23 Total: 2.46 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 0.14 Total: 3.85 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.74 Total: -45.04 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.61 Total: -22.09 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.56 -8.60 -39.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.857 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds