Wall clock time and date at job start Tue Mar 31 2020 21:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 116.99985 * 2 1 4 4 O 1.20825 * 120.00028 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00014 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.46960 * 300.00287 * 5 3 2 7 7 C 1.52999 * 109.46867 * 59.99998 * 5 3 2 8 8 C 1.53003 * 109.47034 * 179.97438 * 5 3 2 9 9 N 1.46509 * 109.46825 * 174.99982 * 8 5 3 10 10 C 1.46911 * 124.35119 * 269.72628 * 9 8 5 11 11 C 1.53996 * 105.26875 * 163.44411 * 10 9 8 12 12 C 1.53993 * 102.36824 * 25.06909 * 11 10 9 13 13 C 1.34496 * 124.34887 * 90.02769 * 9 8 5 14 14 O 1.21283 * 124.94719 * 0.38756 * 13 9 8 15 15 C 1.52232 * 110.85463 * 267.21628 * 11 10 9 16 16 C 1.53247 * 109.42015 * 293.33423 * 15 11 10 17 17 C 1.53133 * 109.05974 * 303.57546 * 16 15 11 18 18 C 1.53038 * 109.34773 * 58.33591 * 17 16 15 19 19 N 1.45966 * 110.65416 * 143.01142 * 11 10 9 20 20 C 1.46903 * 110.99808 * 300.08109 * 19 11 10 21 21 C 1.50700 * 109.46765 * 184.64683 * 20 19 11 22 22 H 1.08007 * 120.00105 * 0.02562 * 21 20 19 23 23 C 1.37883 * 119.99734 * 179.97438 * 21 20 19 24 24 N 1.31509 * 119.99957 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99622 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47226 * 60.00526 * 25 23 21 27 27 H 1.48504 * 109.46970 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47107 * 299.99995 * 25 23 21 29 29 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46813 * 299.99889 * 1 2 3 31 31 H 1.08996 * 109.47084 * 59.99838 * 1 2 3 32 32 H 1.08999 * 109.47134 * 179.97438 * 7 5 3 33 33 H 1.08997 * 109.47156 * 299.99777 * 7 5 3 34 34 H 1.09004 * 109.47395 * 60.00375 * 7 5 3 35 35 H 1.08997 * 109.47246 * 294.99847 * 8 5 3 36 36 H 1.08995 * 109.47280 * 54.99946 * 8 5 3 37 37 H 1.09000 * 110.26858 * 282.54361 * 10 9 8 38 38 H 1.09001 * 110.27283 * 44.60045 * 10 9 8 39 39 H 1.09003 * 110.50642 * 217.00315 * 12 11 10 40 40 H 1.09003 * 110.50850 * 94.29729 * 12 11 10 41 41 H 1.09002 * 109.48093 * 53.31456 * 15 11 10 42 42 H 1.09000 * 109.48222 * 173.35022 * 15 11 10 43 43 H 1.09002 * 109.53880 * 183.69725 * 16 15 11 44 44 H 1.09003 * 109.60752 * 63.49467 * 16 15 11 45 45 H 1.09000 * 109.49086 * 298.36866 * 17 16 15 46 46 H 1.09007 * 109.49120 * 178.29665 * 17 16 15 47 47 H 1.08995 * 109.47284 * 180.16374 * 18 17 16 48 48 H 1.08999 * 109.47118 * 60.16242 * 18 17 16 49 49 H 1.08995 * 109.47394 * 304.64468 * 20 19 11 50 50 H 1.08995 * 109.47379 * 64.64803 * 20 19 11 51 51 H 0.97003 * 120.00091 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9564 0.7805 0.8891 7 6 4.1129 0.5815 -1.2502 8 6 4.0002 2.7421 -0.0011 9 7 5.4583 2.8202 0.1187 10 6 6.1820 2.9005 1.3947 11 6 7.6404 2.5390 1.0571 12 6 7.7360 2.9118 -0.4340 13 6 6.3059 2.8335 -0.9254 14 8 5.9732 2.7896 -2.0909 15 6 7.8884 1.0496 1.2512 16 6 7.7738 0.7037 2.7397 17 6 8.7554 1.5720 3.5318 18 6 8.4403 3.0489 3.2836 19 7 8.5666 3.3424 1.8491 20 6 8.3778 4.7754 1.5863 21 6 9.4231 5.5646 2.3317 22 1 10.1547 5.0529 2.9395 23 6 9.4460 6.9400 2.2369 24 7 8.5555 7.5630 1.4964 25 14 10.7412 7.9183 3.1615 26 1 12.0927 7.5048 2.7059 27 1 10.5505 9.3669 2.8958 28 1 10.6095 7.6612 4.6181 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 5.2013 0.6389 -1.2509 33 1 3.8038 -0.4637 -1.2503 34 1 3.7228 1.0758 -2.1400 35 1 3.6864 3.2134 -0.9325 36 1 3.5383 3.2578 0.8407 37 1 6.1245 3.9113 1.7984 38 1 5.7720 2.1847 2.1071 39 1 8.3627 2.1967 -0.9670 40 1 8.1250 3.9233 -0.5506 41 1 7.1480 0.4814 0.6880 42 1 8.8875 0.7980 0.8954 43 1 8.0154 -0.3487 2.8891 44 1 6.7574 0.8966 3.0829 45 1 9.7738 1.3579 3.2076 46 1 8.6583 1.3531 4.5953 47 1 9.1397 3.6689 3.8443 48 1 7.4226 3.2631 3.6100 49 1 8.4737 4.9645 0.5171 50 1 7.3860 5.0787 1.9214 51 1 8.5714 8.5306 1.4300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:56 Heat of formation + Delta-G solvation = -130.088434 kcal Electronic energy + Delta-G solvation = -31688.867385 eV Core-core repulsion = 27587.575547 eV Total energy + Delta-G solvation = -4101.291838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.40370 -41.60867 -39.64095 -37.83848 -37.01310 -35.52234 -35.39562 -33.71489 -32.62198 -29.39008 -28.92571 -28.73584 -28.01113 -26.71308 -25.52823 -24.61522 -23.22196 -22.23612 -21.52967 -20.67300 -19.32754 -18.85651 -18.61170 -18.04448 -17.50047 -17.48903 -16.99984 -16.78764 -16.36640 -15.93758 -15.63461 -15.38947 -15.28159 -15.07526 -15.03862 -14.42431 -14.24461 -14.12813 -14.00530 -13.92029 -13.62401 -13.56585 -13.35167 -13.19128 -12.94598 -12.87186 -12.73240 -12.60163 -12.51097 -12.41765 -12.29089 -12.02661 -11.94445 -11.84142 -11.59452 -11.52325 -11.40544 -11.11398 -10.88824 -10.75036 -10.53538 -9.85434 -8.91290 -8.18237 -6.26543 1.03769 1.37760 1.42588 1.44655 1.52202 1.54566 2.10319 2.41276 3.03010 3.16273 3.38929 3.45184 3.65979 3.72854 3.79189 3.83615 3.90147 4.12345 4.18674 4.28462 4.30155 4.30938 4.34777 4.43105 4.48117 4.51860 4.61347 4.67867 4.70082 4.75969 4.77944 4.84881 4.86189 5.00446 5.06436 5.09812 5.17631 5.21424 5.28637 5.30567 5.34407 5.38601 5.44119 5.51652 5.63959 5.69715 5.96906 6.10726 6.38532 6.59392 6.71803 6.90862 7.07035 7.42787 8.92169 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.003174 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.450641 B = 8818.650797 C = 9424.121003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.476 3.524 4 O -0.537 6.537 5 C -0.090 4.090 6 H 0.139 0.861 7 C -0.131 4.131 8 C 0.140 3.860 9 N -0.604 5.604 10 C 0.073 3.927 11 C 0.112 3.888 12 C -0.156 4.156 13 C 0.523 3.477 14 O -0.564 6.564 15 C -0.093 4.093 16 C -0.114 4.114 17 C -0.111 4.111 18 C 0.061 3.939 19 N -0.521 5.521 20 C 0.203 3.797 21 C -0.520 4.520 22 H 0.067 0.933 23 C 0.003 3.997 24 N -0.934 5.934 25 Si 0.962 3.038 26 H -0.269 1.269 27 H -0.290 1.290 28 H -0.266 1.266 29 H 0.135 0.865 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.062 0.938 48 H 0.021 0.979 49 H 0.012 0.988 50 H -0.029 1.029 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.158 -20.681 2.297 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.319 3.681 4 O -0.427 6.427 5 C -0.110 4.110 6 H 0.156 0.844 7 C -0.188 4.188 8 C 0.017 3.983 9 N -0.337 5.337 10 C -0.051 4.051 11 C 0.021 3.979 12 C -0.195 4.195 13 C 0.313 3.687 14 O -0.444 6.444 15 C -0.131 4.131 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.066 4.066 19 N -0.244 5.244 20 C 0.077 3.923 21 C -0.559 4.559 22 H 0.085 0.915 23 C -0.195 4.195 24 N -0.575 5.575 25 Si 0.788 3.212 26 H -0.194 1.194 27 H -0.215 1.215 28 H -0.191 1.191 29 H 0.153 0.847 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.080 0.920 48 H 0.039 0.961 49 H 0.030 0.970 50 H -0.012 1.012 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.208 -20.374 1.511 22.839 hybrid contribution -0.594 2.034 0.329 2.144 sum -10.802 -18.341 1.840 21.365 Atomic orbital electron populations 1.23585 0.74658 1.05882 1.02501 1.86494 1.25008 1.32174 1.83450 1.23721 0.91876 0.81397 0.71074 1.90685 1.67894 1.37429 1.46716 1.21396 0.86866 0.98425 1.04309 0.84367 1.21672 1.01636 1.01167 0.94302 1.21150 0.78540 0.94846 1.03753 1.48223 1.05683 1.72215 1.07567 1.23064 0.94053 1.02140 0.85837 1.21445 0.88274 0.96465 0.91753 1.22630 0.94118 1.05445 0.97347 1.21121 0.89102 0.73851 0.84659 1.90661 1.82636 1.52299 1.18787 1.21451 1.03135 0.90322 0.98189 1.21628 0.99487 1.00462 0.93518 1.21604 1.00217 0.92453 1.00590 1.22037 0.99018 0.97622 0.87957 1.61784 1.49328 1.06187 1.07138 1.19509 0.93871 0.83430 0.95497 1.21479 1.14487 0.91321 1.28573 0.91531 1.25837 0.98040 0.99135 0.96473 1.70079 1.37072 1.09139 1.41162 0.85537 0.79473 0.76986 0.79248 1.19412 1.21533 1.19115 0.84707 0.91834 0.92244 0.91750 0.89222 0.93574 0.91297 0.89110 0.93029 0.87502 0.86359 0.88868 0.90091 0.90403 0.89186 0.91481 0.91627 0.90111 0.91953 0.96067 0.97018 1.01190 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.50 10.47 -51.38 -0.54 -7.04 16 3 C 0.48 10.72 7.25 71.24 0.52 11.24 16 4 O -0.54 -15.47 15.67 21.97 0.34 -15.13 16 5 C -0.09 -1.86 3.04 -11.54 -0.04 -1.89 16 6 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 7 C -0.13 -2.73 8.28 71.98 0.60 -2.14 16 8 C 0.14 3.78 4.74 86.38 0.41 4.19 16 9 N -0.60 -18.04 2.79 -818.24 -2.28 -20.32 16 10 C 0.07 2.15 5.10 86.64 0.44 2.59 16 11 C 0.11 3.38 0.60 4.12 0.00 3.38 16 12 C -0.16 -5.26 5.87 30.41 0.18 -5.08 16 13 C 0.52 18.13 6.60 87.93 0.58 18.72 16 14 O -0.56 -22.46 16.47 -3.04 -0.05 -22.51 16 15 C -0.09 -2.02 4.76 30.42 0.14 -1.87 16 16 C -0.11 -2.05 5.80 30.72 0.18 -1.87 16 17 C -0.11 -2.54 6.07 30.65 0.19 -2.36 16 18 C 0.06 2.01 5.05 86.30 0.44 2.45 16 19 N -0.52 -19.56 4.53 -850.76 -3.85 -23.42 16 20 C 0.20 9.94 4.10 85.56 0.35 10.29 16 21 C -0.52 -27.87 8.42 25.60 0.22 -27.66 16 22 H 0.07 3.46 6.71 -2.91 -0.02 3.44 16 23 C 0.00 0.18 5.46 84.66 0.46 0.64 16 24 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 25 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 29 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 31 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 32 H 0.06 1.50 6.13 -2.39 -0.01 1.49 16 33 H 0.09 1.44 8.11 -2.39 -0.02 1.42 16 34 H 0.05 1.13 8.14 -2.38 -0.02 1.12 16 35 H 0.07 2.18 7.92 -2.39 -0.02 2.16 16 36 H 0.09 2.39 7.96 -2.39 -0.02 2.37 16 37 H 0.05 1.90 5.72 -2.39 -0.01 1.89 16 38 H 0.11 2.40 6.25 -2.39 -0.01 2.39 16 39 H 0.12 3.49 7.88 -2.39 -0.02 3.47 16 40 H 0.09 3.88 5.27 -2.39 -0.01 3.87 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.11 6.58 -2.39 -0.02 1.09 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.06 2.36 6.34 -2.39 -0.02 2.34 16 48 H 0.02 0.69 7.24 -2.39 -0.02 0.68 16 49 H 0.01 0.65 5.50 -2.39 -0.01 0.64 16 50 H -0.03 -1.57 6.15 -2.39 -0.01 -1.59 16 51 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -70.11 389.24 2.72 -67.39 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.93 Total: 18.68 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 5.86 Total: 12.15 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -5.85 Total: -98.94 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -0.24 Total: -44.68 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -70.11 2.72 -67.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.699 kcal (2) G-P(sol) polarization free energy of solvation -70.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds