Wall clock time and date at job start Tue Mar 31 2020 21:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20758 * 120.00090 * 2 1 4 4 C 1.50698 * 119.99509 * 180.02562 * 2 1 3 5 5 H 1.08997 * 109.47283 * 319.99662 * 4 2 1 6 6 C 1.52999 * 109.47366 * 80.00029 * 4 2 1 7 7 N 1.46510 * 109.46793 * 199.99638 * 4 2 1 8 8 C 1.46814 * 124.34918 * 119.99675 * 7 4 2 9 9 C 1.54269 * 105.46707 * 196.81514 * 8 7 4 10 10 C 1.54535 * 101.91624 * 334.77259 * 9 8 7 11 11 C 1.34431 * 124.34755 * 299.70386 * 7 4 2 12 12 O 1.21274 * 124.94596 * 359.66287 * 11 7 4 13 13 C 1.54317 * 108.66565 * 89.08755 * 9 8 7 14 14 O 1.40385 * 108.82747 * 48.49461 * 13 9 8 15 15 C 1.44189 * 117.19527 * 92.89548 * 14 13 9 16 16 C 1.53825 * 112.87556 * 317.88057 * 15 14 13 17 17 N 1.44343 * 112.18402 * 318.43018 * 16 15 14 18 18 C 1.46905 * 110.99910 * 215.87093 * 17 16 15 19 19 C 1.53004 * 109.46931 * 301.78570 * 18 17 16 20 20 C 1.50692 * 109.46856 * 184.98586 * 19 18 17 21 21 H 1.07996 * 120.00469 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99887 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00037 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00060 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47087 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46938 * 119.99940 * 24 22 20 27 27 H 1.48495 * 109.47247 * 240.00340 * 24 22 20 28 28 C 1.46546 * 112.92906 * 213.75954 * 9 8 7 29 29 H 1.09003 * 109.47085 * 270.00423 * 1 2 3 30 30 H 1.08999 * 109.47046 * 29.99588 * 1 2 3 31 31 H 1.08994 * 109.47448 * 149.99940 * 1 2 3 32 32 H 1.09005 * 109.47019 * 299.99539 * 6 4 2 33 33 H 1.08997 * 109.46999 * 179.97438 * 6 4 2 34 34 H 1.09002 * 109.46869 * 59.99278 * 6 4 2 35 35 H 1.08997 * 110.24768 * 315.82289 * 8 7 4 36 36 H 1.09009 * 110.24582 * 77.81899 * 8 7 4 37 37 H 1.09001 * 110.49010 * 143.30914 * 10 9 8 38 38 H 1.09007 * 110.48816 * 265.83395 * 10 9 8 39 39 H 1.09002 * 109.58289 * 168.29559 * 13 9 8 40 40 H 1.08998 * 109.58070 * 288.69507 * 13 9 8 41 41 H 1.09000 * 108.80286 * 197.00169 * 15 14 13 42 42 H 1.09000 * 108.79884 * 78.75154 * 15 14 13 43 43 H 1.08993 * 108.93836 * 197.73331 * 16 15 14 44 44 H 1.08994 * 108.94084 * 79.12494 * 16 15 14 45 45 H 1.08997 * 109.47153 * 61.78457 * 18 17 16 46 46 H 1.09000 * 109.46807 * 181.78629 * 18 17 16 47 47 H 1.09000 * 109.47134 * 304.98445 * 19 18 17 48 48 H 1.08997 * 109.46716 * 64.98640 * 19 18 17 49 49 H 0.96993 * 119.99547 * 179.97438 * 23 22 20 50 50 H 1.08993 * 108.90554 * 58.51181 * 28 9 8 51 51 H 1.09000 * 108.90381 * 177.03825 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 1 1.7603 -2.0137 0.6597 6 6 2.2985 -1.8715 -1.4214 7 7 3.6287 -1.0793 0.4719 8 6 4.2128 -1.7212 1.6561 9 6 5.4613 -0.8845 2.0040 10 6 5.8197 -0.2621 0.6356 11 6 4.5126 -0.2620 -0.1265 12 8 4.2933 0.3833 -1.1296 13 6 5.0435 0.2515 2.9612 14 8 4.2671 -0.2916 3.9972 15 6 4.9562 -0.6814 5.2022 16 6 6.2861 -1.4027 4.9239 17 7 6.1789 -2.3414 3.8326 18 6 7.0055 -3.5308 4.0782 19 6 8.4637 -3.1081 4.2680 20 6 9.3294 -4.3347 4.3978 21 1 8.8841 -5.3174 4.3501 22 6 10.6899 -4.2023 4.5784 23 7 11.2320 -3.0055 4.6380 24 14 11.7630 -5.7228 4.7400 25 1 10.9165 -6.9389 4.6403 26 1 12.7737 -5.7332 3.6521 27 1 12.4517 -5.7051 6.0555 28 6 6.5524 -1.6904 2.5585 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 1.2805 -2.0395 -1.7729 33 1 2.8438 -2.8152 -1.4218 34 1 2.7986 -1.1629 -2.0816 35 1 3.5035 -1.7027 2.4835 36 1 4.4986 -2.7477 1.4263 37 1 6.1893 0.7552 0.7642 38 1 6.5603 -0.8740 0.1205 39 1 5.9330 0.7223 3.3798 40 1 4.4583 0.9920 2.4160 41 1 4.3103 -1.3449 5.7773 42 1 5.1579 0.2103 5.7957 43 1 6.5928 -1.9382 5.8223 44 1 7.0464 -0.6611 4.6792 45 1 6.6544 -4.0381 4.9767 46 1 6.9311 -4.2070 3.2265 47 1 8.7878 -2.5241 3.4066 48 1 8.5521 -2.5037 5.1708 49 1 12.1890 -2.9125 4.7655 50 1 6.8260 -2.4592 1.8360 51 1 7.4149 -1.0466 2.7303 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038086.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:00 Heat of formation + Delta-G solvation = -102.104797 kcal Electronic energy + Delta-G solvation = -31639.965007 eV Core-core repulsion = 27539.886631 eV Total energy + Delta-G solvation = -4100.078376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27847 -39.67568 -38.51395 -36.49737 -36.20425 -34.64118 -33.02221 -31.62222 -30.16481 -29.72788 -28.60601 -27.11851 -26.39126 -25.63800 -24.39259 -23.63741 -21.87570 -20.93410 -19.90750 -19.24571 -18.73326 -16.98215 -16.59710 -16.52725 -16.31559 -16.18033 -15.65200 -15.19340 -15.02355 -14.73382 -14.60418 -14.44816 -14.09820 -13.83630 -13.80141 -13.56816 -13.19193 -13.11055 -12.87932 -12.56011 -12.48801 -12.42574 -12.33478 -12.02826 -11.95514 -11.87212 -11.73653 -11.35204 -11.17149 -10.99096 -10.89900 -10.76463 -10.60247 -10.40790 -9.98948 -9.95510 -9.86907 -9.51791 -9.30904 -9.24324 -8.58189 -8.45901 -7.72156 -6.11090 -4.14433 1.82828 2.71295 2.92343 3.23873 3.32171 3.35507 3.75487 3.83052 4.26440 4.38048 4.42599 4.55384 4.74223 4.75799 4.83701 4.84117 4.95908 5.08059 5.14932 5.20956 5.25351 5.26948 5.32150 5.45324 5.46292 5.50324 5.59188 5.66484 5.66938 5.69576 5.78234 5.84971 5.90828 5.93702 5.97101 6.11659 6.18294 6.22570 6.26149 6.55036 6.55889 6.75665 7.17312 7.31909 7.36180 7.38925 7.50089 7.57968 7.71930 7.88828 8.30478 8.32640 8.92834 9.50840 10.99819 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.002818 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.995449 B = 9935.397712 C =10463.800410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.336 3.664 3 O -0.426 6.426 4 C 0.111 3.889 5 H 0.114 0.886 6 C -0.160 4.160 7 N -0.615 5.615 8 C 0.129 3.871 9 C -0.088 4.088 10 C -0.146 4.146 11 C 0.527 3.473 12 O -0.522 6.522 13 C 0.082 3.918 14 O -0.377 6.377 15 C 0.072 3.928 16 C 0.022 3.978 17 N -0.528 5.528 18 C 0.060 3.940 19 C -0.009 4.009 20 C -0.521 4.521 21 H 0.057 0.943 22 C 0.058 3.942 23 N -0.894 5.894 24 Si 0.891 3.109 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.070 3.930 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.083 0.917 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.017 0.983 48 H 0.016 0.984 49 H 0.260 0.740 50 H 0.076 0.924 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.158 3.744 -5.776 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.207 3.793 3 O -0.296 6.296 4 C 0.007 3.993 5 H 0.132 0.868 6 C -0.218 4.218 7 N -0.350 5.350 8 C 0.008 3.992 9 C -0.090 4.090 10 C -0.187 4.187 11 C 0.315 3.685 12 O -0.398 6.398 13 C 0.005 3.995 14 O -0.295 6.295 15 C -0.005 4.005 16 C -0.107 4.107 17 N -0.251 5.251 18 C -0.067 4.067 19 C -0.047 4.047 20 C -0.560 4.560 21 H 0.075 0.925 22 C -0.143 4.143 23 N -0.533 5.533 24 Si 0.719 3.281 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.058 4.058 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.035 0.965 48 H 0.034 0.966 49 H 0.070 0.930 50 H 0.095 0.905 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.531 4.549 -6.340 21.964 hybrid contribution 1.973 -0.680 0.363 2.119 sum -18.558 3.869 -5.977 19.877 Atomic orbital electron populations 1.22270 0.94039 1.04744 1.04670 1.24995 0.91948 0.90606 0.71706 1.90472 1.71585 1.34485 1.33064 1.21366 0.82962 0.96796 0.98221 0.86813 1.22052 1.03022 1.02188 0.94576 1.48265 1.11159 1.46103 1.29508 1.22048 0.95139 0.95581 0.86476 1.21037 0.96146 0.97108 0.94706 1.22406 0.96742 1.04112 0.95429 1.20688 0.85961 0.77860 0.83952 1.90677 1.80732 1.43260 1.25101 1.22374 0.95763 0.93314 0.88093 1.87356 1.35673 1.81488 1.25003 1.23110 0.94326 0.97383 0.85702 1.22403 0.95918 0.95796 0.96604 1.61618 1.55233 1.07296 1.00939 1.22465 0.93411 0.89961 1.00815 1.19708 0.90524 0.97297 0.97176 1.21177 0.92166 0.92817 1.49807 0.92509 1.25024 0.98269 0.95860 0.95196 1.69962 1.11604 1.21775 1.49988 0.86543 0.80532 0.83292 0.77693 1.19664 1.20998 1.21001 1.20880 0.94418 0.97553 0.92956 0.88567 0.89714 0.89700 0.91015 0.91012 0.90624 0.88659 0.90965 0.88032 0.87518 0.92860 0.90019 0.89438 0.93459 0.89900 0.93999 0.91747 0.91720 0.96501 0.96589 0.92996 0.90544 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.29 10.25 36.01 0.37 -0.92 16 2 C 0.34 3.66 6.42 -29.03 -0.19 3.48 16 3 O -0.43 -6.70 14.88 -15.19 -0.23 -6.93 16 4 C 0.11 1.08 3.20 -69.08 -0.22 0.86 16 5 H 0.11 0.78 8.07 -51.93 -0.42 0.36 16 6 C -0.16 -1.41 9.17 37.16 0.34 -1.07 16 7 N -0.62 -7.53 2.76 -166.23 -0.46 -7.99 16 8 C 0.13 1.53 6.06 -3.21 -0.02 1.51 16 9 C -0.09 -1.12 0.63 -155.43 -0.10 -1.22 16 10 C -0.15 -1.86 5.78 -26.78 -0.15 -2.01 16 11 C 0.53 7.73 6.61 -10.84 -0.07 7.66 16 12 O -0.52 -9.40 14.76 -15.63 -0.23 -9.63 16 13 C 0.08 1.06 5.15 37.85 0.19 1.26 16 14 O -0.38 -5.05 8.73 -33.82 -0.30 -5.35 16 15 C 0.07 0.89 7.01 37.59 0.26 1.16 16 16 C 0.02 0.33 4.01 -4.76 -0.02 0.31 16 17 N -0.53 -8.18 4.42 -239.22 -1.06 -9.24 16 18 C 0.06 1.11 5.00 -3.82 -0.02 1.09 16 19 C -0.01 -0.21 4.43 -27.88 -0.12 -0.33 16 20 C -0.52 -13.90 9.11 -34.44 -0.31 -14.22 16 21 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 22 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 23 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 24 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.07 1.03 2.80 -6.37 -0.02 1.01 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.33 8.00 -51.93 -0.42 -0.08 16 32 H 0.07 0.43 8.02 -51.93 -0.42 0.01 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.90 6.76 -51.93 -0.35 0.55 16 35 H 0.10 1.17 6.65 -51.93 -0.35 0.82 16 36 H 0.07 0.84 7.96 -51.92 -0.41 0.43 16 37 H 0.10 1.24 7.85 -51.93 -0.41 0.83 16 38 H 0.11 1.27 7.94 -51.92 -0.41 0.86 16 39 H 0.05 0.68 7.17 -51.93 -0.37 0.31 16 40 H 0.08 1.10 7.84 -51.93 -0.41 0.70 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 1.29 7.09 -51.93 -0.37 0.92 16 44 H 0.04 0.67 6.73 -51.93 -0.35 0.32 16 45 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 46 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 47 H 0.02 0.42 6.84 -51.93 -0.35 0.07 16 48 H 0.02 0.40 7.03 -51.93 -0.37 0.04 16 49 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.08 1.15 7.69 -51.93 -0.40 0.75 16 51 H 0.05 0.81 6.81 -51.93 -0.35 0.46 16 LS Contribution 392.04 15.07 5.91 5.91 Total: -1.00 -33.38 392.04 -9.46 -42.84 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -8.64 Total: -0.45 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -0.17 Total: 0.07 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.78 Total: -42.40 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.75 Total: -21.91 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.38 -9.46 -42.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038086.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.269 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds