Wall clock time and date at job start Tue Mar 31 2020 21:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20758 * 120.00090 * 2 1 4 4 C 1.50698 * 119.99509 * 180.02562 * 2 1 3 5 5 H 1.08997 * 109.47283 * 319.99662 * 4 2 1 6 6 C 1.52999 * 109.47366 * 80.00029 * 4 2 1 7 7 N 1.46510 * 109.46793 * 199.99638 * 4 2 1 8 8 C 1.46814 * 124.34918 * 119.99675 * 7 4 2 9 9 C 1.54269 * 105.46707 * 196.81514 * 8 7 4 10 10 C 1.54535 * 101.91624 * 334.77259 * 9 8 7 11 11 C 1.34431 * 124.34755 * 299.70386 * 7 4 2 12 12 O 1.21274 * 124.94596 * 359.66287 * 11 7 4 13 13 C 1.54317 * 108.66565 * 89.08755 * 9 8 7 14 14 O 1.40385 * 108.82747 * 48.49461 * 13 9 8 15 15 C 1.44189 * 117.19527 * 92.89548 * 14 13 9 16 16 C 1.53825 * 112.87556 * 317.88057 * 15 14 13 17 17 N 1.44343 * 112.18402 * 318.43018 * 16 15 14 18 18 C 1.46905 * 110.99910 * 215.87093 * 17 16 15 19 19 C 1.53004 * 109.46931 * 301.78570 * 18 17 16 20 20 C 1.50692 * 109.46856 * 184.98586 * 19 18 17 21 21 H 1.07996 * 120.00469 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99887 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00037 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00060 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47087 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46938 * 119.99940 * 24 22 20 27 27 H 1.48495 * 109.47247 * 240.00340 * 24 22 20 28 28 C 1.46546 * 112.92906 * 213.75954 * 9 8 7 29 29 H 1.09003 * 109.47085 * 270.00423 * 1 2 3 30 30 H 1.08999 * 109.47046 * 29.99588 * 1 2 3 31 31 H 1.08994 * 109.47448 * 149.99940 * 1 2 3 32 32 H 1.09005 * 109.47019 * 299.99539 * 6 4 2 33 33 H 1.08997 * 109.46999 * 179.97438 * 6 4 2 34 34 H 1.09002 * 109.46869 * 59.99278 * 6 4 2 35 35 H 1.08997 * 110.24768 * 315.82289 * 8 7 4 36 36 H 1.09009 * 110.24582 * 77.81899 * 8 7 4 37 37 H 1.09001 * 110.49010 * 143.30914 * 10 9 8 38 38 H 1.09007 * 110.48816 * 265.83395 * 10 9 8 39 39 H 1.09002 * 109.58289 * 168.29559 * 13 9 8 40 40 H 1.08998 * 109.58070 * 288.69507 * 13 9 8 41 41 H 1.09000 * 108.80286 * 197.00169 * 15 14 13 42 42 H 1.09000 * 108.79884 * 78.75154 * 15 14 13 43 43 H 1.08993 * 108.93836 * 197.73331 * 16 15 14 44 44 H 1.08994 * 108.94084 * 79.12494 * 16 15 14 45 45 H 1.08997 * 109.47153 * 61.78457 * 18 17 16 46 46 H 1.09000 * 109.46807 * 181.78629 * 18 17 16 47 47 H 1.09000 * 109.47134 * 304.98445 * 19 18 17 48 48 H 1.08997 * 109.46716 * 64.98640 * 19 18 17 49 49 H 0.96993 * 119.99547 * 179.97438 * 23 22 20 50 50 H 1.08993 * 108.90554 * 58.51181 * 28 9 8 51 51 H 1.09000 * 108.90381 * 177.03825 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 1 1.7603 -2.0137 0.6597 6 6 2.2985 -1.8715 -1.4214 7 7 3.6287 -1.0793 0.4719 8 6 4.2128 -1.7212 1.6561 9 6 5.4613 -0.8845 2.0040 10 6 5.8197 -0.2621 0.6356 11 6 4.5126 -0.2620 -0.1265 12 8 4.2933 0.3833 -1.1296 13 6 5.0435 0.2515 2.9612 14 8 4.2671 -0.2916 3.9972 15 6 4.9562 -0.6814 5.2022 16 6 6.2861 -1.4027 4.9239 17 7 6.1789 -2.3414 3.8326 18 6 7.0055 -3.5308 4.0782 19 6 8.4637 -3.1081 4.2680 20 6 9.3294 -4.3347 4.3978 21 1 8.8841 -5.3174 4.3501 22 6 10.6899 -4.2023 4.5784 23 7 11.2320 -3.0055 4.6380 24 14 11.7630 -5.7228 4.7400 25 1 10.9165 -6.9389 4.6403 26 1 12.7737 -5.7332 3.6521 27 1 12.4517 -5.7051 6.0555 28 6 6.5524 -1.6904 2.5585 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 1.2805 -2.0395 -1.7729 33 1 2.8438 -2.8152 -1.4218 34 1 2.7986 -1.1629 -2.0816 35 1 3.5035 -1.7027 2.4835 36 1 4.4986 -2.7477 1.4263 37 1 6.1893 0.7552 0.7642 38 1 6.5603 -0.8740 0.1205 39 1 5.9330 0.7223 3.3798 40 1 4.4583 0.9920 2.4160 41 1 4.3103 -1.3449 5.7773 42 1 5.1579 0.2103 5.7957 43 1 6.5928 -1.9382 5.8223 44 1 7.0464 -0.6611 4.6792 45 1 6.6544 -4.0381 4.9767 46 1 6.9311 -4.2070 3.2265 47 1 8.7878 -2.5241 3.4066 48 1 8.5521 -2.5037 5.1708 49 1 12.1890 -2.9125 4.7655 50 1 6.8260 -2.4592 1.8360 51 1 7.4149 -1.0466 2.7303 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038086.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:59 Heat of formation + Delta-G solvation = -123.664907 kcal Electronic energy + Delta-G solvation = -31640.899923 eV Core-core repulsion = 27539.886631 eV Total energy + Delta-G solvation = -4101.013293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.33481 -40.70806 -39.60222 -37.81639 -37.34373 -35.62679 -34.96668 -32.55437 -31.77531 -30.51208 -29.70043 -28.45560 -27.53210 -26.81699 -25.62577 -24.88011 -23.38436 -21.86830 -21.19821 -20.46325 -19.69039 -18.61543 -17.88445 -17.67359 -17.37650 -17.10006 -16.89247 -16.52917 -16.13497 -16.06160 -15.72996 -15.52497 -15.22645 -15.15442 -14.96998 -14.71835 -14.42520 -14.22771 -14.08172 -13.79700 -13.49915 -13.42246 -13.19186 -13.15293 -13.12038 -12.89555 -12.77347 -12.76234 -12.67915 -12.41981 -12.29341 -12.10622 -11.89403 -11.82752 -11.67779 -11.40807 -11.24058 -10.83221 -10.63768 -10.55388 -10.38519 -9.55417 -9.16235 -8.20650 -6.31566 1.02519 1.38835 1.40680 1.52498 1.62268 1.99762 2.39499 2.62692 3.07097 3.09979 3.13065 3.41332 3.48858 3.65927 3.82863 4.03958 4.07455 4.11922 4.12692 4.19432 4.29133 4.36523 4.48475 4.52388 4.54907 4.62795 4.65818 4.67663 4.70079 4.73789 4.76852 4.79024 4.84886 4.87657 4.93181 5.01376 5.06269 5.08654 5.13312 5.18434 5.25956 5.49920 5.58365 5.63677 5.74574 6.01151 6.13451 6.21902 6.33699 6.44255 6.61131 6.87157 7.24703 7.38233 8.89922 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.002818 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.995449 B = 9935.397712 C =10463.800410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.333 3.667 3 O -0.485 6.485 4 C 0.098 3.902 5 H 0.154 0.846 6 C -0.154 4.154 7 N -0.610 5.610 8 C 0.137 3.863 9 C -0.081 4.081 10 C -0.144 4.144 11 C 0.521 3.479 12 O -0.562 6.562 13 C 0.087 3.913 14 O -0.380 6.380 15 C 0.079 3.921 16 C 0.022 3.978 17 N -0.514 5.514 18 C 0.076 3.924 19 C 0.001 3.999 20 C -0.536 4.536 21 H 0.063 0.937 22 C 0.001 3.999 23 N -0.933 5.933 24 Si 0.959 3.041 25 H -0.259 1.259 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.078 3.922 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.023 0.977 45 H 0.071 0.929 46 H 0.070 0.930 47 H -0.008 1.008 48 H -0.008 1.008 49 H 0.261 0.739 50 H 0.074 0.926 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.399 1.603 -5.312 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.209 3.791 3 O -0.360 6.360 4 C -0.005 4.005 5 H 0.171 0.829 6 C -0.212 4.212 7 N -0.344 5.344 8 C 0.016 3.984 9 C -0.083 4.083 10 C -0.185 4.185 11 C 0.309 3.691 12 O -0.441 6.441 13 C 0.010 3.990 14 O -0.299 6.299 15 C 0.002 3.998 16 C -0.107 4.107 17 N -0.236 5.236 18 C -0.051 4.051 19 C -0.038 4.038 20 C -0.575 4.575 21 H 0.081 0.919 22 C -0.197 4.197 23 N -0.574 5.574 24 Si 0.784 3.216 25 H -0.183 1.183 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.051 4.051 29 H 0.133 0.867 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.042 0.958 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.010 0.990 48 H 0.010 0.990 49 H 0.070 0.930 50 H 0.092 0.908 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -22.820 2.371 -5.859 23.679 hybrid contribution 2.652 -0.006 0.236 2.663 sum -20.168 2.365 -5.623 21.070 Atomic orbital electron populations 1.22291 0.90352 1.06127 1.06164 1.25761 0.94065 0.89989 0.69313 1.90469 1.73057 1.36342 1.36098 1.21833 0.81679 0.97397 0.99617 0.82877 1.22015 1.04823 1.01134 0.93187 1.48350 1.12024 1.45022 1.28955 1.22000 0.94492 0.95532 0.86410 1.20864 0.96063 0.96937 0.94408 1.22401 0.96438 1.04376 0.95307 1.20899 0.86769 0.77789 0.83599 1.90652 1.81523 1.45013 1.26917 1.22283 0.95508 0.93192 0.88065 1.87348 1.35801 1.81455 1.25256 1.23117 0.93025 0.98065 0.85582 1.22452 0.97196 0.95190 0.95873 1.61705 1.53586 1.06851 1.01449 1.22215 0.90418 0.91177 1.01334 1.19585 0.93640 0.95719 0.94843 1.21662 0.92859 0.94008 1.48935 0.91856 1.25918 0.99948 0.98789 0.95015 1.70094 1.11921 1.24029 1.51307 0.85482 0.78632 0.79919 0.77531 1.18296 1.20846 1.20723 1.20810 0.94467 0.97209 0.92566 0.86743 0.90296 0.86368 0.87574 0.90405 0.94296 0.88195 0.90086 0.87996 0.86918 0.93089 0.90566 0.87616 0.91954 0.90652 0.95830 0.91046 0.91188 0.98967 0.99003 0.93000 0.90759 0.95366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 10.25 71.24 0.73 -1.20 16 2 C 0.33 6.81 6.42 29.10 0.19 7.00 16 3 O -0.49 -15.53 14.88 18.82 0.28 -15.25 16 4 C 0.10 1.69 3.20 44.24 0.14 1.83 16 5 H 0.15 1.43 8.07 -2.39 -0.02 1.41 16 6 C -0.15 -2.41 9.17 71.98 0.66 -1.75 16 7 N -0.61 -14.27 2.76 -798.43 -2.20 -16.47 16 8 C 0.14 3.00 6.06 86.75 0.53 3.53 16 9 C -0.08 -2.02 0.63 -52.78 -0.03 -2.06 16 10 C -0.14 -3.75 5.78 30.56 0.18 -3.57 16 11 C 0.52 15.51 6.61 87.90 0.58 16.09 16 12 O -0.56 -21.09 14.76 17.25 0.25 -20.83 16 13 C 0.09 2.22 5.15 72.43 0.37 2.59 16 14 O -0.38 -9.52 8.73 -143.93 -1.26 -10.78 16 15 C 0.08 1.81 7.01 72.26 0.51 2.32 16 16 C 0.02 0.66 4.01 87.06 0.35 1.00 16 17 N -0.51 -15.50 4.42 -910.76 -4.03 -19.53 16 18 C 0.08 2.76 5.00 86.30 0.43 3.19 16 19 C 0.00 0.03 4.43 29.85 0.13 0.16 16 20 C -0.54 -28.63 9.11 25.60 0.23 -28.39 16 21 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 22 C 0.00 0.06 5.46 84.66 0.46 0.52 16 23 N -0.93 -55.10 13.29 21.45 0.28 -54.81 16 24 Si 0.96 42.85 29.54 68.60 2.03 44.88 16 25 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 28 C 0.08 2.27 2.80 84.12 0.24 2.51 16 29 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.12 0.39 8.00 -2.39 -0.02 0.37 16 32 H 0.11 0.89 8.02 -2.38 -0.02 0.87 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.04 0.92 6.76 -2.39 -0.02 0.90 16 35 H 0.10 2.17 6.65 -2.39 -0.02 2.15 16 36 H 0.08 1.68 7.96 -2.38 -0.02 1.66 16 37 H 0.10 2.61 7.85 -2.39 -0.02 2.59 16 38 H 0.11 2.75 7.94 -2.38 -0.02 2.73 16 39 H 0.05 1.31 7.17 -2.39 -0.02 1.30 16 40 H 0.08 2.06 7.84 -2.39 -0.02 2.05 16 41 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.08 2.33 7.09 -2.39 -0.02 2.31 16 44 H 0.02 0.77 6.73 -2.39 -0.02 0.76 16 45 H 0.07 2.52 8.08 -2.39 -0.02 2.50 16 46 H 0.07 2.49 7.93 -2.39 -0.02 2.47 16 47 H -0.01 -0.42 6.84 -2.39 -0.02 -0.44 16 48 H -0.01 -0.44 7.03 -2.39 -0.02 -0.46 16 49 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 50 H 0.07 2.22 7.69 -2.39 -0.02 2.20 16 51 H 0.03 0.96 6.81 -2.39 -0.02 0.94 16 Total: -1.00 -75.13 392.04 1.96 -73.17 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.91 Total: 15.84 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 5.69 Total: 3.78 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -5.94 Total: -90.81 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.72 Total: -46.86 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -75.13 1.96 -73.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038086.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.495 kcal (2) G-P(sol) polarization free energy of solvation -75.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds