Wall clock time and date at job start Tue Mar 31 2020 21:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20758 * 119.99911 * 2 1 4 4 C 1.50697 * 119.99557 * 179.97438 * 2 1 3 5 5 H 1.08999 * 109.47009 * 45.00964 * 4 2 1 6 6 C 1.52995 * 109.47461 * 285.00516 * 4 2 1 7 7 N 1.46505 * 109.46856 * 165.00360 * 4 2 1 8 8 C 1.46964 * 124.35708 * 240.00302 * 7 4 2 9 9 C 1.53655 * 105.29771 * 196.31615 * 8 7 4 10 10 C 1.53795 * 102.64266 * 335.39355 * 9 8 7 11 11 C 1.34519 * 124.35304 * 59.97504 * 7 4 2 12 12 O 1.21278 * 124.94619 * 359.59687 * 11 7 4 13 13 C 1.50304 * 112.06273 * 215.05206 * 9 8 7 14 14 O 1.44711 * 112.36961 * 329.14149 * 13 9 8 15 15 C 1.44065 * 115.98483 * 319.06011 * 14 13 9 16 16 C 1.50676 * 111.98028 * 319.47912 * 15 14 13 17 17 N 1.47535 * 108.52394 * 93.66061 * 16 15 14 18 18 C 1.46903 * 110.99860 * 152.63391 * 17 16 15 19 19 C 1.53003 * 109.46859 * 203.64665 * 18 17 16 20 20 C 1.50700 * 109.46821 * 178.97100 * 19 18 17 21 21 H 1.08003 * 120.00243 * 359.97438 * 20 19 18 22 22 C 1.37885 * 119.99796 * 179.97438 * 20 19 18 23 23 N 1.31508 * 119.99634 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99900 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47095 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46938 * 120.00063 * 24 22 20 27 27 H 1.48496 * 109.46646 * 240.00207 * 24 22 20 28 28 C 1.40700 * 114.38985 * 279.18602 * 17 16 15 29 29 H 1.09003 * 109.47534 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47726 * 300.01133 * 1 2 3 31 31 H 1.09004 * 109.46938 * 60.00516 * 1 2 3 32 32 H 1.09001 * 109.47292 * 299.99680 * 6 4 2 33 33 H 1.08995 * 109.47464 * 60.00310 * 6 4 2 34 34 H 1.09003 * 109.46939 * 180.02562 * 6 4 2 35 35 H 1.09004 * 110.28052 * 77.35458 * 8 7 4 36 36 H 1.09006 * 110.27668 * 315.26758 * 8 7 4 37 37 H 1.08998 * 110.52394 * 142.64743 * 10 9 8 38 38 H 1.09009 * 110.51858 * 265.24312 * 10 9 8 39 39 H 1.09002 * 108.90143 * 89.88329 * 13 9 8 40 40 H 1.08998 * 108.90759 * 208.39806 * 13 9 8 41 41 H 1.09006 * 108.97875 * 80.12017 * 15 14 13 42 42 H 1.08999 * 108.98344 * 198.91352 * 15 14 13 43 43 H 1.08996 * 109.63280 * 333.95144 * 16 15 14 44 44 H 1.09003 * 109.63265 * 213.36943 * 16 15 14 45 45 H 1.09002 * 109.47196 * 323.64234 * 18 17 16 46 46 H 1.09000 * 109.47140 * 83.64221 * 18 17 16 47 47 H 1.08997 * 109.46732 * 298.96417 * 19 18 17 48 48 H 1.08992 * 109.47553 * 58.96667 * 19 18 17 49 49 H 0.97000 * 119.99852 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.21151 * 181.16955 * 28 17 16 51 51 H 1.09000 * 109.21737 * 300.53689 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 1 1.8128 -1.9833 -0.7259 6 6 2.1919 -1.9330 1.3941 7 7 3.6600 -1.0612 -0.3569 8 6 4.3337 -1.6523 -1.5217 9 6 5.8360 -1.4627 -1.2605 10 6 5.8625 -0.2538 -0.3102 11 6 4.4937 -0.2668 0.3384 12 8 4.1930 0.3497 1.3386 13 6 6.6006 -1.1998 -2.5275 14 8 6.0047 -1.8494 -3.6752 15 6 5.5155 -3.1872 -3.4598 16 6 6.4462 -3.9954 -2.5933 17 7 5.9974 -3.8839 -1.1923 18 6 6.3873 -5.0703 -0.4186 19 6 5.4575 -5.2210 0.7872 20 6 5.8416 -6.4521 1.5668 21 1 6.6661 -7.0659 1.2352 22 6 5.1404 -6.7949 2.7034 23 7 4.1362 -6.0477 3.1068 24 14 5.6159 -8.3214 3.6694 25 1 6.7703 -8.9841 3.0111 26 1 5.9911 -7.9345 5.0532 27 1 4.4648 -9.2586 3.7122 28 6 6.4041 -2.7031 -0.5441 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.6396 -1.2548 2.1206 33 1 1.1507 -2.1145 1.6601 34 1 2.7373 -2.8768 1.3945 35 1 4.0399 -1.1312 -2.4328 36 1 4.0945 -2.7130 -1.5983 37 1 6.6426 -0.3755 0.4413 38 1 6.0135 0.6692 -0.8702 39 1 6.6296 -0.1249 -2.7058 40 1 7.6209 -1.5635 -2.4063 41 1 4.5390 -3.1344 -2.9782 42 1 5.4085 -3.6851 -4.4236 43 1 7.4608 -3.6078 -2.6846 44 1 6.4210 -5.0400 -2.9037 45 1 6.3113 -5.9563 -1.0489 46 1 7.4149 -4.9572 -0.0732 47 1 5.5472 -4.3431 1.4270 48 1 4.4279 -5.3157 0.4425 49 1 3.6426 -6.2891 3.9062 50 1 6.0468 -2.7179 0.4855 51 1 7.4928 -2.6500 -0.5452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038095.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:05 Heat of formation + Delta-G solvation = -86.894601 kcal Electronic energy + Delta-G solvation = -32412.218789 eV Core-core repulsion = 28312.799976 eV Total energy + Delta-G solvation = -4099.418813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40766 -39.69379 -38.36682 -36.43253 -35.90134 -34.35658 -33.12682 -31.54764 -30.53895 -29.52083 -28.40906 -27.67125 -26.58041 -25.46532 -24.18908 -23.54479 -21.10991 -20.79147 -20.45554 -19.33246 -18.58793 -16.97761 -16.85138 -16.56180 -16.34074 -15.76661 -15.42030 -15.31163 -15.15146 -14.62769 -14.53713 -14.30716 -14.26084 -13.99375 -13.47362 -13.41567 -13.07673 -12.92159 -12.77007 -12.56237 -12.35191 -12.33565 -12.21574 -11.97712 -11.78001 -11.72802 -11.61561 -11.42625 -11.19090 -11.10292 -10.95310 -10.82804 -10.55180 -10.43741 -9.92978 -9.77802 -9.63977 -9.48376 -9.28582 -9.16985 -8.39449 -8.38770 -7.84618 -6.05886 -4.08313 2.00710 2.92107 3.03090 3.26810 3.35044 3.37841 3.69534 4.04473 4.08542 4.36801 4.41683 4.45067 4.67114 4.86572 4.96044 5.00216 5.10699 5.12378 5.20258 5.25619 5.30752 5.31691 5.35966 5.36530 5.50722 5.57756 5.60371 5.70951 5.72647 5.76394 5.79376 5.82135 5.90550 5.95918 6.05192 6.10274 6.16939 6.26147 6.36330 6.54340 6.72164 6.85324 7.06010 7.31229 7.35707 7.55839 7.56052 7.69525 7.83434 7.99057 8.35531 8.49828 8.98499 9.55964 11.05088 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009291 B = 0.004570 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.095864 B = 6125.832545 C = 8105.413496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.339 3.661 3 O -0.435 6.435 4 C 0.114 3.886 5 H 0.114 0.886 6 C -0.161 4.161 7 N -0.609 5.609 8 C 0.115 3.885 9 C -0.106 4.106 10 C -0.139 4.139 11 C 0.529 3.471 12 O -0.520 6.520 13 C 0.081 3.919 14 O -0.391 6.391 15 C 0.045 3.955 16 C 0.024 3.976 17 N -0.554 5.554 18 C 0.068 3.932 19 C 0.033 3.967 20 C -0.524 4.524 21 H 0.053 0.947 22 C 0.061 3.939 23 N -0.889 5.889 24 Si 0.889 3.111 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.084 3.916 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.024 0.976 47 H 0.014 0.986 48 H 0.023 0.977 49 H 0.260 0.740 50 H 0.089 0.911 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 9.019 -12.953 15.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.211 3.789 3 O -0.306 6.306 4 C 0.010 3.990 5 H 0.131 0.869 6 C -0.219 4.219 7 N -0.343 5.343 8 C -0.007 4.007 9 C -0.107 4.107 10 C -0.180 4.180 11 C 0.316 3.684 12 O -0.395 6.395 13 C 0.004 3.996 14 O -0.311 6.311 15 C -0.031 4.031 16 C -0.103 4.103 17 N -0.278 5.278 18 C -0.058 4.058 19 C -0.005 4.005 20 C -0.563 4.563 21 H 0.071 0.929 22 C -0.141 4.141 23 N -0.528 5.528 24 Si 0.717 3.283 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.046 4.046 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.042 0.958 47 H 0.032 0.968 48 H 0.042 0.958 49 H 0.069 0.931 50 H 0.107 0.893 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.829 10.014 -12.450 16.226 hybrid contribution 1.069 -1.200 0.888 1.836 sum -1.760 8.814 -11.562 14.645 Atomic orbital electron populations 1.22226 0.94077 1.04743 1.04617 1.25078 0.91998 0.90650 0.71158 1.90433 1.71674 1.34659 1.33848 1.21415 0.81406 0.95985 1.00219 0.86854 1.22054 1.03127 1.02817 0.93877 1.48179 1.09861 1.48087 1.28188 1.22489 0.89986 1.00892 0.87286 1.21620 0.96343 0.96237 0.96509 1.22290 0.97192 0.98582 0.99921 1.20614 0.86734 0.77801 0.83230 1.90685 1.79877 1.44303 1.24655 1.22291 0.95428 0.97670 0.84200 1.88362 1.79823 1.28766 1.34138 1.22897 0.98289 0.81981 0.99908 1.22441 0.97156 1.01292 0.89430 1.59325 1.63282 1.03522 1.01643 1.22385 0.98090 0.88850 0.96425 1.19054 0.94675 0.96455 0.90300 1.21194 1.15861 1.09766 1.09489 0.92850 1.24958 0.95013 0.96733 0.97356 1.69960 1.20409 1.38197 1.24255 0.86581 0.78420 0.83247 0.80005 1.19826 1.21048 1.20988 1.21175 0.96534 0.87929 0.98970 0.89791 0.89038 0.89171 0.91018 0.91170 0.89308 0.91320 0.86928 0.87803 0.87858 0.89187 0.92588 0.90386 0.89456 0.93785 0.89530 0.91915 0.95812 0.96762 0.95832 0.93051 0.89262 0.95712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.76 10.32 36.01 0.37 -1.39 16 2 C 0.34 4.55 6.40 -29.04 -0.19 4.36 16 3 O -0.44 -7.66 14.97 -14.69 -0.22 -7.87 16 4 C 0.11 1.53 3.13 -69.08 -0.22 1.31 16 5 H 0.11 1.19 8.07 -51.93 -0.42 0.77 16 6 C -0.16 -2.42 9.17 37.16 0.34 -2.08 16 7 N -0.61 -9.07 2.73 -166.40 -0.45 -9.53 16 8 C 0.12 1.49 4.38 -3.45 -0.02 1.47 16 9 C -0.11 -1.31 0.60 -154.53 -0.09 -1.41 16 10 C -0.14 -1.82 5.86 -27.09 -0.16 -1.98 16 11 C 0.53 8.96 6.74 -10.72 -0.07 8.89 16 12 O -0.52 -10.77 14.90 -15.13 -0.23 -11.00 16 13 C 0.08 0.88 5.65 35.81 0.20 1.08 16 14 O -0.39 -4.64 10.26 -35.23 -0.36 -5.00 16 15 C 0.05 0.50 6.17 35.99 0.22 0.72 16 16 C 0.02 0.30 5.34 -4.64 -0.02 0.27 16 17 N -0.55 -8.39 2.89 -239.73 -0.69 -9.09 16 18 C 0.07 1.28 4.97 -3.82 -0.02 1.26 16 19 C 0.03 0.78 5.03 -27.88 -0.14 0.64 16 20 C -0.52 -14.08 9.11 -34.44 -0.31 -14.39 16 21 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 24 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.08 1.23 3.71 -6.47 -0.02 1.21 16 29 H 0.08 0.56 8.00 -51.93 -0.42 0.15 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.27 6.80 -51.93 -0.35 0.92 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.07 0.83 7.42 -51.93 -0.39 0.45 16 36 H 0.11 1.53 4.89 -51.93 -0.25 1.28 16 37 H 0.10 1.31 7.86 -51.93 -0.41 0.91 16 38 H 0.10 1.15 7.47 -51.92 -0.39 0.77 16 39 H 0.09 0.85 7.39 -51.93 -0.38 0.47 16 40 H 0.06 0.59 6.69 -51.93 -0.35 0.25 16 41 H 0.08 0.89 4.47 -51.93 -0.23 0.66 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.04 0.54 6.84 -51.93 -0.36 0.18 16 44 H 0.09 1.01 7.43 -51.93 -0.39 0.63 16 45 H 0.06 1.14 7.45 -51.93 -0.39 0.76 16 46 H 0.02 0.45 7.99 -51.93 -0.41 0.04 16 47 H 0.01 0.37 6.76 -51.93 -0.35 0.02 16 48 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 50 H 0.09 1.61 6.36 -51.93 -0.33 1.28 16 51 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -33.48 386.41 -8.93 -42.40 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -8.29 Total: 1.52 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.22 Total: 1.56 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.41 Total: -43.43 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.81 Total: -23.87 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.48 -8.93 -42.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038095.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.490 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds