Wall clock time and date at job start Tue Mar 31 2020 21:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20758 * 119.99911 * 2 1 4 4 C 1.50697 * 119.99557 * 179.97438 * 2 1 3 5 5 H 1.08999 * 109.47009 * 45.00964 * 4 2 1 6 6 C 1.52995 * 109.47461 * 285.00516 * 4 2 1 7 7 N 1.46505 * 109.46856 * 165.00360 * 4 2 1 8 8 C 1.46964 * 124.35708 * 240.00302 * 7 4 2 9 9 C 1.53655 * 105.29771 * 196.31615 * 8 7 4 10 10 C 1.53795 * 102.64266 * 335.39355 * 9 8 7 11 11 C 1.34519 * 124.35304 * 59.97504 * 7 4 2 12 12 O 1.21278 * 124.94619 * 359.59687 * 11 7 4 13 13 C 1.50304 * 112.06273 * 215.05206 * 9 8 7 14 14 O 1.44711 * 112.36961 * 329.14149 * 13 9 8 15 15 C 1.44065 * 115.98483 * 319.06011 * 14 13 9 16 16 C 1.50676 * 111.98028 * 319.47912 * 15 14 13 17 17 N 1.47535 * 108.52394 * 93.66061 * 16 15 14 18 18 C 1.46903 * 110.99860 * 152.63391 * 17 16 15 19 19 C 1.53003 * 109.46859 * 203.64665 * 18 17 16 20 20 C 1.50700 * 109.46821 * 178.97100 * 19 18 17 21 21 H 1.08003 * 120.00243 * 359.97438 * 20 19 18 22 22 C 1.37885 * 119.99796 * 179.97438 * 20 19 18 23 23 N 1.31508 * 119.99634 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99900 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47095 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46938 * 120.00063 * 24 22 20 27 27 H 1.48496 * 109.46646 * 240.00207 * 24 22 20 28 28 C 1.40700 * 114.38985 * 279.18602 * 17 16 15 29 29 H 1.09003 * 109.47534 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47726 * 300.01133 * 1 2 3 31 31 H 1.09004 * 109.46938 * 60.00516 * 1 2 3 32 32 H 1.09001 * 109.47292 * 299.99680 * 6 4 2 33 33 H 1.08995 * 109.47464 * 60.00310 * 6 4 2 34 34 H 1.09003 * 109.46939 * 180.02562 * 6 4 2 35 35 H 1.09004 * 110.28052 * 77.35458 * 8 7 4 36 36 H 1.09006 * 110.27668 * 315.26758 * 8 7 4 37 37 H 1.08998 * 110.52394 * 142.64743 * 10 9 8 38 38 H 1.09009 * 110.51858 * 265.24312 * 10 9 8 39 39 H 1.09002 * 108.90143 * 89.88329 * 13 9 8 40 40 H 1.08998 * 108.90759 * 208.39806 * 13 9 8 41 41 H 1.09006 * 108.97875 * 80.12017 * 15 14 13 42 42 H 1.08999 * 108.98344 * 198.91352 * 15 14 13 43 43 H 1.08996 * 109.63280 * 333.95144 * 16 15 14 44 44 H 1.09003 * 109.63265 * 213.36943 * 16 15 14 45 45 H 1.09002 * 109.47196 * 323.64234 * 18 17 16 46 46 H 1.09000 * 109.47140 * 83.64221 * 18 17 16 47 47 H 1.08997 * 109.46732 * 298.96417 * 19 18 17 48 48 H 1.08992 * 109.47553 * 58.96667 * 19 18 17 49 49 H 0.97000 * 119.99852 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.21151 * 181.16955 * 28 17 16 51 51 H 1.09000 * 109.21737 * 300.53689 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 1 1.8128 -1.9833 -0.7259 6 6 2.1919 -1.9330 1.3941 7 7 3.6600 -1.0612 -0.3569 8 6 4.3337 -1.6523 -1.5217 9 6 5.8360 -1.4627 -1.2605 10 6 5.8625 -0.2538 -0.3102 11 6 4.4937 -0.2668 0.3384 12 8 4.1930 0.3497 1.3386 13 6 6.6006 -1.1998 -2.5275 14 8 6.0047 -1.8494 -3.6752 15 6 5.5155 -3.1872 -3.4598 16 6 6.4462 -3.9954 -2.5933 17 7 5.9974 -3.8839 -1.1923 18 6 6.3873 -5.0703 -0.4186 19 6 5.4575 -5.2210 0.7872 20 6 5.8416 -6.4521 1.5668 21 1 6.6661 -7.0659 1.2352 22 6 5.1404 -6.7949 2.7034 23 7 4.1362 -6.0477 3.1068 24 14 5.6159 -8.3214 3.6694 25 1 6.7703 -8.9841 3.0111 26 1 5.9911 -7.9345 5.0532 27 1 4.4648 -9.2586 3.7122 28 6 6.4041 -2.7031 -0.5441 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.6396 -1.2548 2.1206 33 1 1.1507 -2.1145 1.6601 34 1 2.7373 -2.8768 1.3945 35 1 4.0399 -1.1312 -2.4328 36 1 4.0945 -2.7130 -1.5983 37 1 6.6426 -0.3755 0.4413 38 1 6.0135 0.6692 -0.8702 39 1 6.6296 -0.1249 -2.7058 40 1 7.6209 -1.5635 -2.4063 41 1 4.5390 -3.1344 -2.9782 42 1 5.4085 -3.6851 -4.4236 43 1 7.4608 -3.6078 -2.6846 44 1 6.4210 -5.0400 -2.9037 45 1 6.3113 -5.9563 -1.0489 46 1 7.4149 -4.9572 -0.0732 47 1 5.5472 -4.3431 1.4270 48 1 4.4279 -5.3157 0.4425 49 1 3.6426 -6.2891 3.9062 50 1 6.0468 -2.7179 0.4855 51 1 7.4928 -2.6500 -0.5452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038095.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:04 Heat of formation + Delta-G solvation = -108.381895 kcal Electronic energy + Delta-G solvation = -32413.150548 eV Core-core repulsion = 28312.799976 eV Total energy + Delta-G solvation = -4100.350572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.54219 -40.82308 -39.57831 -37.65512 -37.14444 -35.52979 -35.07216 -32.61611 -32.13510 -30.51861 -29.61470 -28.91982 -27.61117 -26.95263 -25.55404 -24.92118 -22.44029 -22.04494 -21.67283 -20.47893 -19.76828 -18.60216 -18.06958 -17.75979 -17.61366 -16.89270 -16.64797 -16.44639 -16.37388 -16.25442 -15.76663 -15.52067 -15.51378 -15.19116 -14.72617 -14.49048 -14.43202 -14.20956 -14.12473 -13.90420 -13.58077 -13.40742 -13.23498 -13.17938 -13.12680 -12.88328 -12.87763 -12.82407 -12.77859 -12.49091 -12.41807 -12.14474 -11.88008 -11.72119 -11.52932 -11.31601 -11.14447 -10.87953 -10.76263 -10.52225 -10.37079 -9.58020 -9.11191 -8.18050 -6.28223 0.94785 1.39248 1.40774 1.52335 1.63676 1.93848 2.40013 2.75545 2.94048 3.03657 3.16033 3.28693 3.36307 3.59798 3.76966 3.95763 4.04293 4.06476 4.13651 4.17316 4.23770 4.38848 4.44564 4.49860 4.51619 4.57415 4.58391 4.61551 4.65823 4.68434 4.72009 4.78790 4.80158 4.81056 4.92375 4.98125 5.04885 5.07911 5.12592 5.22702 5.26486 5.48750 5.57221 5.70166 5.79501 6.11802 6.13295 6.15748 6.32630 6.51276 6.52321 6.89471 7.22448 7.40785 8.93131 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009291 B = 0.004570 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.095864 B = 6125.832545 C = 8105.413496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.341 3.659 3 O -0.482 6.482 4 C 0.102 3.898 5 H 0.149 0.851 6 C -0.148 4.148 7 N -0.611 5.611 8 C 0.118 3.882 9 C -0.091 4.091 10 C -0.134 4.134 11 C 0.511 3.489 12 O -0.570 6.570 13 C 0.083 3.917 14 O -0.395 6.395 15 C 0.048 3.952 16 C 0.027 3.973 17 N -0.556 5.556 18 C 0.085 3.915 19 C 0.045 3.955 20 C -0.542 4.542 21 H 0.059 0.941 22 C 0.006 3.994 23 N -0.925 5.925 24 Si 0.957 3.043 25 H -0.262 1.262 26 H -0.284 1.284 27 H -0.277 1.277 28 C 0.088 3.912 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.036 0.964 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.052 0.948 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.019 0.981 47 H -0.020 1.020 48 H -0.003 1.003 49 H 0.261 0.739 50 H 0.046 0.954 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.252 8.249 -15.557 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.217 3.783 3 O -0.357 6.357 4 C -0.002 4.002 5 H 0.166 0.834 6 C -0.206 4.206 7 N -0.344 5.344 8 C -0.003 4.003 9 C -0.092 4.092 10 C -0.174 4.174 11 C 0.300 3.700 12 O -0.449 6.449 13 C 0.007 3.993 14 O -0.314 6.314 15 C -0.028 4.028 16 C -0.100 4.100 17 N -0.280 5.280 18 C -0.042 4.042 19 C 0.008 3.992 20 C -0.581 4.581 21 H 0.077 0.923 22 C -0.192 4.192 23 N -0.565 5.565 24 Si 0.783 3.217 25 H -0.186 1.186 26 H -0.211 1.211 27 H -0.203 1.203 28 C -0.041 4.041 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.055 0.945 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.148 0.852 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.130 0.870 43 H 0.070 0.930 44 H 0.115 0.885 45 H 0.092 0.908 46 H 0.038 0.962 47 H -0.002 1.002 48 H 0.016 0.984 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.760 9.211 -15.106 17.907 hybrid contribution 1.017 -0.992 1.712 2.225 sum -1.743 8.219 -13.394 15.811 Atomic orbital electron populations 1.22250 0.89988 1.06941 1.05621 1.25625 0.94092 0.89420 0.69166 1.90424 1.73023 1.35935 1.36271 1.21728 0.81359 0.97257 0.99825 0.83405 1.21879 1.04140 1.00075 0.94545 1.48399 1.10493 1.47224 1.28322 1.22595 0.90109 1.00582 0.87063 1.21519 0.96233 0.94424 0.97064 1.22318 0.94904 1.00084 1.00100 1.21327 0.88398 0.77409 0.82863 1.90641 1.81035 1.46462 1.26795 1.22336 0.95165 0.99018 0.82785 1.88375 1.79898 1.28955 1.34194 1.22919 0.97409 0.81739 1.00783 1.22536 0.97894 1.02506 0.87055 1.59182 1.63781 1.02179 1.02894 1.21996 0.96188 0.90999 0.94973 1.18824 0.94440 0.94168 0.91774 1.21649 1.15850 1.10603 1.09988 0.92307 1.25847 0.94954 0.99863 0.98552 1.70101 1.21582 1.40028 1.24791 0.85514 0.78517 0.79463 0.78229 1.18567 1.21056 1.20314 1.21054 0.96892 0.89048 0.97145 0.87074 0.88640 0.87250 0.94490 0.88031 0.92836 0.89522 0.87505 0.87823 0.85242 0.87044 0.91775 0.90865 0.86950 0.93019 0.88458 0.90829 0.96247 1.00165 0.98424 0.93027 0.93597 0.94975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.97 10.32 71.24 0.74 -2.24 16 2 C 0.34 9.05 6.40 29.10 0.19 9.24 16 3 O -0.48 -17.34 14.97 18.33 0.27 -17.07 16 4 C 0.10 2.76 3.13 44.24 0.14 2.90 16 5 H 0.15 2.90 8.07 -2.39 -0.02 2.88 16 6 C -0.15 -4.75 9.17 71.98 0.66 -4.09 16 7 N -0.61 -18.64 2.73 -798.90 -2.18 -20.83 16 8 C 0.12 2.93 4.38 86.51 0.38 3.31 16 9 C -0.09 -2.17 0.60 -52.19 -0.03 -2.20 16 10 C -0.13 -3.50 5.86 30.36 0.18 -3.32 16 11 C 0.51 18.15 6.74 87.94 0.59 18.74 16 12 O -0.57 -25.30 14.90 16.76 0.25 -25.05 16 13 C 0.08 1.57 5.65 71.11 0.40 1.97 16 14 O -0.39 -7.93 10.26 -148.98 -1.53 -9.46 16 15 C 0.05 0.89 6.17 71.23 0.44 1.33 16 16 C 0.03 0.59 5.34 85.43 0.46 1.04 16 17 N -0.56 -16.61 2.89 -912.36 -2.63 -19.24 16 18 C 0.09 3.20 4.97 86.30 0.43 3.63 16 19 C 0.05 2.28 5.03 29.85 0.15 2.43 16 20 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 21 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 22 C 0.01 0.35 5.46 84.66 0.46 0.82 16 23 N -0.93 -55.01 13.29 21.45 0.28 -54.73 16 24 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 25 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 27 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 28 C 0.09 2.64 3.71 87.80 0.33 2.96 16 29 H 0.11 1.12 8.00 -2.39 -0.02 1.10 16 30 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.04 1.42 6.80 -2.39 -0.02 1.41 16 33 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.09 1.90 7.42 -2.39 -0.02 1.88 16 36 H 0.11 2.83 4.89 -2.38 -0.01 2.82 16 37 H 0.10 2.71 7.86 -2.39 -0.02 2.69 16 38 H 0.13 2.69 7.47 -2.38 -0.02 2.68 16 39 H 0.11 1.69 7.39 -2.39 -0.02 1.67 16 40 H 0.06 1.15 6.69 -2.39 -0.02 1.13 16 41 H 0.07 1.49 4.47 -2.38 -0.01 1.48 16 42 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 1.10 6.84 -2.39 -0.02 1.08 16 44 H 0.10 1.98 7.43 -2.39 -0.02 1.96 16 45 H 0.07 2.61 7.45 -2.39 -0.02 2.59 16 46 H 0.02 0.74 7.99 -2.39 -0.02 0.72 16 47 H -0.02 -1.13 6.76 -2.39 -0.02 -1.15 16 48 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 49 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 50 H 0.05 1.78 6.36 -2.39 -0.02 1.76 16 51 H 0.03 0.91 7.68 -2.39 -0.02 0.89 16 Total: -1.00 -77.90 386.41 3.15 -74.75 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.93 Total: 19.10 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 5.74 Total: 7.05 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -4.53 Total: -94.79 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -1.00 Total: -51.58 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -77.90 3.15 -74.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038095.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.634 kcal (2) G-P(sol) polarization free energy of solvation -77.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds