Wall clock time and date at job start Tue Mar 31 2020 21:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00137 * 2 1 4 4 O 1.20833 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00432 * 179.71953 * 3 2 1 6 6 H 1.09000 * 109.47190 * 300.28287 * 5 3 2 7 7 C 1.53010 * 109.46632 * 60.27590 * 5 3 2 8 8 C 1.52996 * 109.47298 * 180.27351 * 5 3 2 9 9 N 1.46500 * 109.46966 * 175.00133 * 8 5 3 10 10 C 1.46884 * 124.37135 * 90.00425 * 9 8 5 11 11 C 1.54713 * 105.52074 * 196.78312 * 10 9 8 12 12 C 1.53603 * 101.50943 * 335.47873 * 11 10 9 13 13 C 1.53253 * 111.08802 * 144.99378 * 12 11 10 14 14 C 1.54642 * 104.67445 * 120.48168 * 13 12 11 15 15 N 1.48644 * 104.63651 * 23.68463 * 14 13 12 16 16 C 1.46898 * 111.00141 * 201.49016 * 15 14 13 17 17 C 1.52994 * 109.47093 * 290.12626 * 16 15 14 18 18 C 1.50697 * 109.47160 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00064 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00194 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00126 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99805 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47180 * 90.00287 * 22 20 18 24 24 H 1.48507 * 109.47180 * 210.00226 * 22 20 18 25 25 H 1.48493 * 109.47399 * 330.00244 * 22 20 18 26 26 C 1.48812 * 104.37795 * 321.14054 * 15 14 13 27 27 C 1.34757 * 124.37454 * 269.70434 * 9 8 5 28 28 O 1.21278 * 125.13154 * 359.02354 * 27 9 8 29 29 H 1.08997 * 109.47403 * 60.00337 * 1 2 3 30 30 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47380 * 299.99656 * 1 2 3 32 32 H 1.09000 * 109.46764 * 60.00436 * 7 5 3 33 33 H 1.09005 * 109.46732 * 180.02562 * 7 5 3 34 34 H 1.08990 * 109.47121 * 300.00016 * 7 5 3 35 35 H 1.08992 * 109.47431 * 295.00478 * 8 5 3 36 36 H 1.09001 * 109.46673 * 55.01184 * 8 5 3 37 37 H 1.08998 * 110.23668 * 315.79533 * 10 9 8 38 38 H 1.09003 * 110.23920 * 77.68362 * 10 9 8 39 39 H 1.09002 * 111.01667 * 93.53945 * 11 10 9 40 40 H 1.09003 * 111.01762 * 217.42502 * 11 10 9 41 41 H 1.09001 * 110.40019 * 239.28785 * 13 12 11 42 42 H 1.09002 * 110.39315 * 1.68743 * 13 12 11 43 43 H 1.09008 * 110.40187 * 142.47473 * 14 13 12 44 44 H 1.09002 * 110.40243 * 264.89052 * 14 13 12 45 45 H 1.08998 * 109.47242 * 50.12525 * 16 15 14 46 46 H 1.09004 * 109.47165 * 170.12384 * 16 15 14 47 47 H 1.09004 * 109.46788 * 299.99651 * 17 16 15 48 48 H 1.08994 * 109.47393 * 59.99723 * 17 16 15 49 49 H 0.97001 * 119.99747 * 179.97438 * 21 20 18 50 50 H 1.08991 * 110.45589 * 279.82550 * 26 15 14 51 51 H 1.09007 * 110.45279 * 157.26363 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0064 6 1 3.9524 0.7784 0.8966 7 6 4.1184 0.5845 -1.2425 8 6 4.0000 2.7420 0.0119 9 7 5.4575 2.8199 0.1384 10 6 6.3887 2.8372 -0.9973 11 6 7.7744 2.4927 -0.4018 12 6 7.5972 2.9303 1.0599 13 6 8.3625 2.0027 2.0098 14 6 9.3581 2.9299 2.7451 15 7 8.7482 4.2824 2.6553 16 6 9.7615 5.3301 2.8388 17 6 10.2354 5.3320 4.2935 18 6 11.2744 6.4071 4.4819 19 1 11.5677 7.0268 3.6474 20 6 11.8513 6.5991 5.7194 21 7 12.7584 7.5370 5.8837 22 14 11.3445 5.5268 7.1626 23 1 12.2169 4.3264 7.2178 24 1 11.4825 6.2976 8.4244 25 1 9.9311 5.1041 6.9929 26 6 8.1678 4.3359 1.2861 27 6 6.1166 2.8907 1.3117 28 8 5.5936 2.9161 2.4056 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.7323 1.0810 -2.1327 33 1 5.2070 0.6412 -1.2377 34 1 3.8094 -0.4607 -1.2464 35 1 3.6903 3.2160 -0.9194 36 1 3.5344 3.2553 0.8533 37 1 6.0984 2.0884 -1.7343 38 1 6.4084 3.8269 -1.4537 39 1 7.9736 1.4231 -0.4683 40 1 8.5629 3.0666 -0.8888 41 1 7.6788 1.5392 2.7210 42 1 8.8994 1.2402 1.4455 43 1 9.4602 2.6274 3.7874 44 1 10.3280 2.9165 2.2479 45 1 10.6085 5.1355 2.1810 46 1 9.3287 6.3007 2.5963 47 1 9.3883 5.5267 4.9513 48 1 10.6681 4.3615 4.5360 49 1 13.1640 7.6722 6.7544 50 1 8.9430 4.5551 0.5520 51 1 7.3741 5.0815 1.2377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:17 Heat of formation + Delta-G solvation = -111.175616 kcal Electronic energy + Delta-G solvation = -30183.321291 eV Core-core repulsion = 26082.849574 eV Total energy + Delta-G solvation = -4100.471717 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.42734 -40.83713 -38.15585 -37.10614 -36.58048 -35.13993 -33.46943 -32.18186 -30.53597 -29.22372 -28.27285 -28.13146 -26.91858 -25.10853 -24.23017 -23.07333 -21.66738 -21.49124 -20.55676 -19.76946 -18.94008 -18.11169 -17.34174 -16.86925 -16.83855 -16.39999 -16.19632 -15.76941 -15.18758 -14.88348 -14.65708 -14.22402 -14.16756 -13.92930 -13.80813 -13.72123 -13.49737 -13.11876 -12.96214 -12.72391 -12.67066 -12.59387 -12.44538 -12.29715 -12.07936 -11.79928 -11.73499 -11.58648 -11.30867 -11.26538 -11.23746 -11.01982 -10.83138 -10.80309 -10.72081 -9.88766 -9.84039 -9.71343 -9.62122 -9.17593 -8.98706 -8.49136 -7.97216 -6.00926 -3.98893 1.76514 2.09506 2.52542 2.84565 3.36007 3.43782 3.52224 4.00563 4.11470 4.15437 4.30781 4.38034 4.40726 4.50875 4.51850 4.66717 4.73670 4.75250 4.79942 4.86616 4.99873 5.03553 5.10393 5.15076 5.21628 5.31971 5.33732 5.34897 5.49731 5.51492 5.53209 5.63414 5.67289 5.71074 5.80713 5.87147 5.93559 6.04216 6.12765 6.28853 6.30118 6.35788 6.77933 6.87345 7.15602 7.22202 7.28594 7.48122 7.65711 7.87681 8.10574 8.56170 9.02763 9.62041 11.12306 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021823 B = 0.002185 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.770877 B =12810.445606 C =13377.367906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.505 6.505 5 C -0.102 4.102 6 H 0.114 0.886 7 C -0.146 4.146 8 C 0.144 3.856 9 N -0.625 5.625 10 C 0.098 3.902 11 C -0.123 4.123 12 C -0.098 4.098 13 C -0.103 4.103 14 C 0.037 3.963 15 N -0.508 5.508 16 C 0.061 3.939 17 C -0.006 4.006 18 C -0.521 4.521 19 H 0.070 0.930 20 C 0.067 3.933 21 N -0.905 5.905 22 Si 0.879 3.121 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.262 1.262 26 C 0.058 3.942 27 C 0.536 3.464 28 O -0.504 6.504 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.046 0.954 45 H 0.029 0.971 46 H 0.067 0.933 47 H 0.025 0.975 48 H 0.011 0.989 49 H 0.263 0.737 50 H 0.054 0.946 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.620 -18.811 -20.552 34.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.313 3.687 4 O -0.392 6.392 5 C -0.123 4.123 6 H 0.132 0.868 7 C -0.203 4.203 8 C 0.021 3.979 9 N -0.361 5.361 10 C -0.025 4.025 11 C -0.161 4.161 12 C -0.102 4.102 13 C -0.141 4.141 14 C -0.091 4.091 15 N -0.232 5.232 16 C -0.066 4.066 17 C -0.044 4.044 18 C -0.559 4.559 19 H 0.088 0.912 20 C -0.134 4.134 21 N -0.544 5.544 22 Si 0.706 3.294 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.186 1.186 26 C -0.071 4.071 27 C 0.324 3.676 28 O -0.376 6.376 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.064 0.936 45 H 0.048 0.952 46 H 0.086 0.914 47 H 0.044 0.956 48 H 0.029 0.971 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.500 -18.303 -19.400 33.639 hybrid contribution 0.216 -0.465 0.158 0.536 sum -20.284 -18.768 -19.242 33.674 Atomic orbital electron populations 1.23300 0.76098 1.03824 1.02709 1.86501 1.23592 1.33337 1.83966 1.23604 0.91668 0.81430 0.72028 1.90696 1.67184 1.36267 1.45029 1.21526 0.87364 1.00282 1.03117 0.86793 1.21888 1.02263 1.01060 0.95126 1.21104 0.79126 0.92969 1.04675 1.48352 1.05515 1.74601 1.07587 1.22286 0.88871 1.02321 0.88985 1.22748 0.96725 1.02787 0.93870 1.21422 0.93609 0.98824 0.96386 1.22243 0.97776 0.96741 0.97389 1.23131 0.95370 0.89360 1.01258 1.65562 1.31333 1.02767 1.23552 1.22298 0.91133 0.93254 0.99944 1.19517 0.96445 0.96820 0.91578 1.21082 1.20913 1.16941 0.96971 0.91172 1.24989 0.94556 0.95096 0.98733 1.69916 1.27776 1.32682 1.23984 0.86777 0.80055 0.80595 0.81959 1.20387 1.21443 1.18608 1.22857 0.98711 0.93503 0.92039 1.20408 0.89020 0.74698 0.83510 1.90750 1.73631 1.48116 1.25133 0.91818 0.87972 0.91718 0.91911 0.90415 0.91035 0.89376 0.88810 0.90028 0.90825 0.89596 0.88778 0.90299 0.90705 0.89809 0.93578 0.95244 0.91431 0.95641 0.97116 0.92775 0.92779 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.99 10.48 -39.24 -0.41 -3.40 16 3 C 0.47 4.46 7.25 36.00 0.26 4.72 16 4 O -0.50 -6.08 15.67 -18.76 -0.29 -6.37 16 5 C -0.10 -0.81 3.03 -91.77 -0.28 -1.09 16 6 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 7 C -0.15 -0.76 8.51 37.16 0.32 -0.45 16 8 C 0.14 1.31 4.72 -4.04 -0.02 1.29 16 9 N -0.63 -5.93 2.72 -172.52 -0.47 -6.40 16 10 C 0.10 0.61 6.80 -2.93 -0.02 0.59 16 11 C -0.12 -0.85 6.20 -25.52 -0.16 -1.01 16 12 C -0.10 -1.13 0.83 -155.25 -0.13 -1.26 16 13 C -0.10 -1.26 6.28 -25.74 -0.16 -1.42 16 14 C 0.04 0.58 5.76 -1.99 -0.01 0.56 16 15 N -0.51 -9.13 5.37 -230.16 -1.24 -10.36 16 16 C 0.06 1.25 4.75 -3.83 -0.02 1.24 16 17 C -0.01 -0.15 4.10 -27.89 -0.11 -0.26 16 18 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 19 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 21 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 22 Si 0.88 22.45 27.47 -169.99 -4.67 17.78 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 25 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 26 C 0.06 0.80 5.66 -2.57 -0.01 0.79 16 27 C 0.54 7.13 6.60 -11.22 -0.07 7.05 16 28 O -0.50 -9.00 17.17 5.56 0.10 -8.91 16 29 H 0.06 0.35 8.13 -51.93 -0.42 -0.08 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.35 5.65 -51.93 -0.29 0.06 16 34 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.10 7.74 -51.93 -0.40 0.70 16 37 H 0.08 0.32 5.89 -51.93 -0.31 0.01 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.47 7.60 -51.93 -0.39 0.08 16 40 H 0.09 0.56 7.46 -51.93 -0.39 0.18 16 41 H 0.08 1.08 7.48 -51.93 -0.39 0.69 16 42 H 0.07 0.70 7.43 -51.93 -0.39 0.31 16 43 H 0.08 1.41 7.79 -51.92 -0.40 1.00 16 44 H 0.05 0.69 7.81 -51.93 -0.41 0.28 16 45 H 0.03 0.59 7.88 -51.93 -0.41 0.18 16 46 H 0.07 1.41 8.13 -51.93 -0.42 0.98 16 47 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 48 H 0.01 0.26 6.70 -51.93 -0.35 -0.09 16 49 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 50 H 0.05 0.67 7.31 -51.93 -0.38 0.29 16 51 H 0.08 1.13 7.84 -51.93 -0.41 0.72 16 LS Contribution 401.07 15.07 6.04 6.04 Total: -1.00 -36.49 401.07 -8.63 -45.12 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -8.67 Total: -4.43 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 0.21 Total: -1.53 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.93 Total: -44.29 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.61 Total: -18.68 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.49 -8.63 -45.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.060 kcal (2) G-P(sol) polarization free energy of solvation -36.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds