Wall clock time and date at job start Tue Mar 31 2020 21:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00137 * 2 1 4 4 O 1.20833 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00432 * 179.71953 * 3 2 1 6 6 H 1.09000 * 109.47190 * 300.28287 * 5 3 2 7 7 C 1.53010 * 109.46632 * 60.27590 * 5 3 2 8 8 C 1.52996 * 109.47298 * 180.27351 * 5 3 2 9 9 N 1.46500 * 109.46966 * 175.00133 * 8 5 3 10 10 C 1.46884 * 124.37135 * 90.00425 * 9 8 5 11 11 C 1.54713 * 105.52074 * 196.78312 * 10 9 8 12 12 C 1.53603 * 101.50943 * 335.47873 * 11 10 9 13 13 C 1.53253 * 111.08802 * 144.99378 * 12 11 10 14 14 C 1.54642 * 104.67445 * 120.48168 * 13 12 11 15 15 N 1.48644 * 104.63651 * 23.68463 * 14 13 12 16 16 C 1.46898 * 111.00141 * 201.49016 * 15 14 13 17 17 C 1.52994 * 109.47093 * 290.12626 * 16 15 14 18 18 C 1.50697 * 109.47160 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00064 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00194 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00126 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99805 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47180 * 90.00287 * 22 20 18 24 24 H 1.48507 * 109.47180 * 210.00226 * 22 20 18 25 25 H 1.48493 * 109.47399 * 330.00244 * 22 20 18 26 26 C 1.48812 * 104.37795 * 321.14054 * 15 14 13 27 27 C 1.34757 * 124.37454 * 269.70434 * 9 8 5 28 28 O 1.21278 * 125.13154 * 359.02354 * 27 9 8 29 29 H 1.08997 * 109.47403 * 60.00337 * 1 2 3 30 30 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47380 * 299.99656 * 1 2 3 32 32 H 1.09000 * 109.46764 * 60.00436 * 7 5 3 33 33 H 1.09005 * 109.46732 * 180.02562 * 7 5 3 34 34 H 1.08990 * 109.47121 * 300.00016 * 7 5 3 35 35 H 1.08992 * 109.47431 * 295.00478 * 8 5 3 36 36 H 1.09001 * 109.46673 * 55.01184 * 8 5 3 37 37 H 1.08998 * 110.23668 * 315.79533 * 10 9 8 38 38 H 1.09003 * 110.23920 * 77.68362 * 10 9 8 39 39 H 1.09002 * 111.01667 * 93.53945 * 11 10 9 40 40 H 1.09003 * 111.01762 * 217.42502 * 11 10 9 41 41 H 1.09001 * 110.40019 * 239.28785 * 13 12 11 42 42 H 1.09002 * 110.39315 * 1.68743 * 13 12 11 43 43 H 1.09008 * 110.40187 * 142.47473 * 14 13 12 44 44 H 1.09002 * 110.40243 * 264.89052 * 14 13 12 45 45 H 1.08998 * 109.47242 * 50.12525 * 16 15 14 46 46 H 1.09004 * 109.47165 * 170.12384 * 16 15 14 47 47 H 1.09004 * 109.46788 * 299.99651 * 17 16 15 48 48 H 1.08994 * 109.47393 * 59.99723 * 17 16 15 49 49 H 0.97001 * 119.99747 * 179.97438 * 21 20 18 50 50 H 1.08991 * 110.45589 * 279.82550 * 26 15 14 51 51 H 1.09007 * 110.45279 * 157.26363 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0064 6 1 3.9524 0.7784 0.8966 7 6 4.1184 0.5845 -1.2425 8 6 4.0000 2.7420 0.0119 9 7 5.4575 2.8199 0.1384 10 6 6.3887 2.8372 -0.9973 11 6 7.7744 2.4927 -0.4018 12 6 7.5972 2.9303 1.0599 13 6 8.3625 2.0027 2.0098 14 6 9.3581 2.9299 2.7451 15 7 8.7482 4.2824 2.6553 16 6 9.7615 5.3301 2.8388 17 6 10.2354 5.3320 4.2935 18 6 11.2744 6.4071 4.4819 19 1 11.5677 7.0268 3.6474 20 6 11.8513 6.5991 5.7194 21 7 12.7584 7.5370 5.8837 22 14 11.3445 5.5268 7.1626 23 1 12.2169 4.3264 7.2178 24 1 11.4825 6.2976 8.4244 25 1 9.9311 5.1041 6.9929 26 6 8.1678 4.3359 1.2861 27 6 6.1166 2.8907 1.3117 28 8 5.5936 2.9161 2.4056 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.7323 1.0810 -2.1327 33 1 5.2070 0.6412 -1.2377 34 1 3.8094 -0.4607 -1.2464 35 1 3.6903 3.2160 -0.9194 36 1 3.5344 3.2553 0.8533 37 1 6.0984 2.0884 -1.7343 38 1 6.4084 3.8269 -1.4537 39 1 7.9736 1.4231 -0.4683 40 1 8.5629 3.0666 -0.8888 41 1 7.6788 1.5392 2.7210 42 1 8.8994 1.2402 1.4455 43 1 9.4602 2.6274 3.7874 44 1 10.3280 2.9165 2.2479 45 1 10.6085 5.1355 2.1810 46 1 9.3287 6.3007 2.5963 47 1 9.3883 5.5267 4.9513 48 1 10.6681 4.3615 4.5360 49 1 13.1640 7.6722 6.7544 50 1 8.9430 4.5551 0.5520 51 1 7.3741 5.0815 1.2377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:16 Heat of formation + Delta-G solvation = -136.869654 kcal Electronic energy + Delta-G solvation = -30184.435468 eV Core-core repulsion = 26082.849574 eV Total energy + Delta-G solvation = -4101.585894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.28050 -41.60418 -39.28983 -37.90759 -37.47654 -36.17630 -35.13390 -33.68596 -31.75128 -30.59605 -29.14918 -28.76398 -27.54575 -26.62567 -25.11483 -23.96777 -23.21630 -22.30992 -21.53730 -21.09604 -19.86630 -19.01737 -18.82119 -18.02159 -17.56512 -17.35562 -16.97543 -16.74149 -16.36128 -16.20173 -15.78293 -15.50411 -15.38199 -14.91567 -14.83791 -14.60596 -14.56179 -14.19829 -14.03434 -13.78676 -13.72835 -13.43450 -13.32113 -13.22020 -13.10369 -12.94843 -12.79897 -12.54770 -12.40650 -12.35794 -12.27057 -11.93383 -11.86383 -11.84307 -11.75925 -11.56417 -11.52766 -11.47180 -11.37703 -10.77592 -10.66317 -9.74842 -9.32123 -8.31937 -6.35326 1.03838 1.32245 1.35802 1.39248 1.49393 1.59207 2.13413 2.34419 3.03470 3.04528 3.29392 3.47369 3.48738 3.57026 3.73879 3.83127 3.94483 4.08632 4.14718 4.25090 4.26642 4.28518 4.37118 4.39465 4.45364 4.47863 4.56533 4.64605 4.66172 4.67523 4.69224 4.75543 4.85282 4.91317 4.94491 4.97402 5.01055 5.09742 5.15732 5.19798 5.22928 5.27957 5.31817 5.42237 5.57140 5.61297 5.98778 6.07126 6.13774 6.27792 6.58489 6.71551 7.16674 7.29532 8.84375 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021823 B = 0.002185 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.770877 B =12810.445606 C =13377.367906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.471 3.529 4 O -0.537 6.537 5 C -0.096 4.096 6 H 0.103 0.897 7 C -0.140 4.140 8 C 0.144 3.856 9 N -0.614 5.614 10 C 0.092 3.908 11 C -0.112 4.112 12 C -0.096 4.096 13 C -0.094 4.094 14 C 0.032 3.968 15 N -0.536 5.536 16 C 0.076 3.924 17 C 0.001 3.999 18 C -0.530 4.530 19 H 0.037 0.963 20 C 0.010 3.990 21 N -0.947 5.947 22 Si 0.946 3.054 23 H -0.262 1.262 24 H -0.282 1.282 25 H -0.259 1.259 26 C 0.058 3.942 27 C 0.526 3.474 28 O -0.565 6.565 29 H 0.066 0.934 30 H 0.133 0.867 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.117 0.883 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.058 0.942 42 H 0.115 0.885 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.035 0.965 46 H 0.056 0.944 47 H 0.009 0.991 48 H 0.017 0.983 49 H 0.267 0.733 50 H 0.078 0.922 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.852 -21.726 -23.188 37.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.315 3.685 4 O -0.427 6.427 5 C -0.116 4.116 6 H 0.121 0.879 7 C -0.197 4.197 8 C 0.021 3.979 9 N -0.347 5.347 10 C -0.028 4.028 11 C -0.149 4.149 12 C -0.100 4.100 13 C -0.132 4.132 14 C -0.096 4.096 15 N -0.261 5.261 16 C -0.052 4.052 17 C -0.037 4.037 18 C -0.569 4.569 19 H 0.056 0.944 20 C -0.188 4.188 21 N -0.587 5.587 22 Si 0.770 3.230 23 H -0.186 1.186 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.070 4.070 27 C 0.314 3.686 28 O -0.443 6.443 29 H 0.085 0.915 30 H 0.151 0.849 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.077 0.923 42 H 0.133 0.867 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.075 0.925 47 H 0.027 0.973 48 H 0.035 0.965 49 H 0.076 0.924 50 H 0.096 0.904 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.736 -21.249 -22.107 37.016 hybrid contribution 0.219 0.495 0.924 1.071 sum -20.516 -20.754 -21.183 36.061 Atomic orbital electron populations 1.23569 0.74734 1.05811 1.02508 1.86494 1.24996 1.32605 1.83494 1.23928 0.92280 0.81275 0.71049 1.90682 1.68000 1.37320 1.46717 1.21470 0.86416 0.99414 1.04351 0.87890 1.21903 1.02949 1.01109 0.93700 1.21078 0.78866 0.93884 1.04046 1.48409 1.05970 1.72674 1.07675 1.22639 0.87683 1.04347 0.88168 1.22832 0.97560 1.04682 0.89842 1.21415 0.91962 0.97042 0.99608 1.22214 0.96828 0.96863 0.97281 1.23185 0.96843 0.88765 1.00823 1.65419 1.30618 1.03119 1.26903 1.21944 0.92046 0.94110 0.97135 1.19379 0.94566 0.95404 0.94334 1.21389 1.21778 1.17516 0.96180 0.94430 1.25898 0.94517 0.96518 1.01833 1.70046 1.29146 1.34502 1.25026 0.85709 0.79899 0.79147 0.78220 1.18643 1.20723 1.18303 1.22903 0.98719 0.95044 0.90323 1.20832 0.90133 0.74109 0.83531 1.90713 1.74830 1.51144 1.27627 0.91486 0.84922 0.92529 0.90677 0.88996 0.90415 0.87397 0.92448 0.86529 0.89631 0.86967 0.86853 0.92283 0.86687 0.91914 0.92468 0.94673 0.92510 0.97257 0.96469 0.92407 0.90419 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.63 10.48 -51.34 -0.54 -6.16 16 3 C 0.47 8.70 7.25 71.23 0.52 9.22 16 4 O -0.54 -13.14 15.67 21.94 0.34 -12.80 16 5 C -0.10 -1.40 3.03 -11.54 -0.04 -1.44 16 6 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 7 C -0.14 -0.97 8.51 71.99 0.61 -0.36 16 8 C 0.14 2.52 4.72 86.38 0.41 2.93 16 9 N -0.61 -10.49 2.72 -818.13 -2.22 -12.72 16 10 C 0.09 0.74 6.80 86.89 0.59 1.33 16 11 C -0.11 -0.99 6.20 31.38 0.19 -0.79 16 12 C -0.10 -1.99 0.83 -52.66 -0.04 -2.04 16 13 C -0.09 -2.09 6.28 31.24 0.20 -1.89 16 14 C 0.03 0.95 5.76 86.52 0.50 1.45 16 15 N -0.54 -19.19 5.37 -882.08 -4.74 -23.93 16 16 C 0.08 3.14 4.75 86.30 0.41 3.55 16 17 C 0.00 0.05 4.10 29.85 0.12 0.17 16 18 C -0.53 -31.63 9.66 25.60 0.25 -31.38 16 19 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 20 C 0.01 0.58 5.47 84.65 0.46 1.04 16 21 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 22 Si 0.95 46.74 27.47 68.60 1.88 48.63 16 23 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 25 H -0.26 -12.57 6.54 99.48 0.65 -11.92 16 26 C 0.06 1.54 5.66 86.06 0.49 2.03 16 27 C 0.53 13.67 6.60 87.52 0.58 14.25 16 28 O -0.57 -21.12 17.17 -3.02 -0.05 -21.18 16 29 H 0.07 0.67 8.13 -2.39 -0.02 0.65 16 30 H 0.13 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 32 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.09 0.39 5.65 -2.38 -0.01 0.38 16 34 H 0.08 0.50 8.12 -2.39 -0.02 0.48 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.44 7.74 -2.39 -0.02 1.42 16 37 H 0.12 0.20 5.89 -2.39 -0.01 0.19 16 38 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.11 0.50 7.60 -2.39 -0.02 0.49 16 40 H 0.11 0.68 7.46 -2.39 -0.02 0.67 16 41 H 0.06 1.57 7.48 -2.39 -0.02 1.56 16 42 H 0.11 1.63 7.43 -2.39 -0.02 1.61 16 43 H 0.06 2.11 7.79 -2.38 -0.02 2.09 16 44 H 0.06 1.58 7.81 -2.39 -0.02 1.56 16 45 H 0.04 1.40 7.88 -2.39 -0.02 1.38 16 46 H 0.06 2.43 8.13 -2.39 -0.02 2.41 16 47 H 0.01 0.48 7.20 -2.38 -0.02 0.47 16 48 H 0.02 0.83 6.70 -2.39 -0.02 0.82 16 49 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 50 H 0.08 1.70 7.31 -2.39 -0.02 1.68 16 51 H 0.06 1.83 7.84 -2.38 -0.02 1.81 16 Total: -1.00 -84.83 401.07 2.27 -82.56 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 0.85 Total: 6.20 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 6.44 Total: -0.45 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -6.66 Total: -96.79 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.25 Total: -40.14 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.88 Total: 48.63 kcal Total: -84.83 2.27 -82.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.313 kcal (2) G-P(sol) polarization free energy of solvation -84.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds