Wall clock time and date at job start Tue Mar 31 2020 21:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 117.00001 * 2 1 4 4 O 1.20826 * 120.00094 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99603 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.46942 * 299.99225 * 5 3 2 7 7 C 1.52993 * 109.47534 * 60.00095 * 5 3 2 8 8 C 1.53001 * 109.46592 * 180.02562 * 5 3 2 9 9 N 1.46499 * 109.46997 * 174.99898 * 8 5 3 10 10 C 1.46882 * 124.37342 * 90.00050 * 9 8 5 11 11 C 1.54706 * 105.51805 * 196.82368 * 10 9 8 12 12 C 1.53612 * 101.51640 * 335.47221 * 11 10 9 13 13 C 1.53609 * 110.85560 * 263.09956 * 12 11 10 14 14 C 1.55161 * 102.66142 * 217.72817 * 13 12 11 15 15 N 1.48617 * 103.36311 * 36.57126 * 14 13 12 16 16 C 1.46905 * 111.00055 * 200.85329 * 15 14 13 17 17 C 1.53006 * 109.46949 * 287.44483 * 16 15 14 18 18 C 1.50699 * 109.47082 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99909 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00112 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00156 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99821 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47197 * 90.00472 * 22 20 18 24 24 H 1.48507 * 109.47160 * 210.00416 * 22 20 18 25 25 H 1.48500 * 109.47430 * 330.00226 * 22 20 18 26 26 C 1.48182 * 105.86498 * 321.39130 * 15 14 13 27 27 C 1.34751 * 124.37269 * 269.69678 * 9 8 5 28 28 O 1.21284 * 125.13058 * 358.96302 * 27 9 8 29 29 H 1.09001 * 109.47157 * 299.99890 * 1 2 3 30 30 H 1.09004 * 109.47122 * 60.00023 * 1 2 3 31 31 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46749 * 300.00022 * 7 5 3 33 33 H 1.09001 * 109.47443 * 59.99171 * 7 5 3 34 34 H 1.08996 * 109.47242 * 180.02562 * 7 5 3 35 35 H 1.08997 * 109.47338 * 294.99460 * 8 5 3 36 36 H 1.09001 * 109.47631 * 55.00057 * 8 5 3 37 37 H 1.09003 * 110.23546 * 315.83171 * 10 9 8 38 38 H 1.08994 * 110.23867 * 77.81076 * 10 9 8 39 39 H 1.09005 * 111.01864 * 93.52809 * 11 10 9 40 40 H 1.09001 * 111.01675 * 217.37001 * 11 10 9 41 41 H 1.09006 * 110.76918 * 336.01800 * 13 12 11 42 42 H 1.08999 * 110.77398 * 99.42668 * 13 12 11 43 43 H 1.09008 * 110.63914 * 278.10148 * 14 13 12 44 44 H 1.09002 * 110.78040 * 155.11358 * 14 13 12 45 45 H 1.08997 * 109.47301 * 47.44525 * 16 15 14 46 46 H 1.08997 * 109.47209 * 167.45143 * 16 15 14 47 47 H 1.08997 * 109.47154 * 300.00133 * 17 16 15 48 48 H 1.09006 * 109.46593 * 60.00018 * 17 16 15 49 49 H 0.96997 * 119.99705 * 180.02562 * 21 20 18 50 50 H 1.09001 * 110.01966 * 265.82297 * 26 15 14 51 51 H 1.08993 * 110.02291 * 144.41867 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1130 0.5815 -1.2501 8 6 4.0002 2.7420 0.0002 9 7 5.4582 2.8201 0.1200 10 6 6.3843 2.8351 -1.0199 11 6 7.7724 2.4908 -0.4300 12 6 7.6021 2.9309 1.0318 13 6 8.1702 4.3416 1.2480 14 6 8.8117 4.2377 2.6570 15 7 9.3661 2.8590 2.6812 16 6 9.5713 2.3983 4.0610 17 6 10.7698 3.1291 4.6697 18 6 10.9800 2.6570 6.0853 19 1 10.3246 1.9100 6.5083 20 6 12.0089 3.1785 6.8404 21 7 12.1927 2.7661 8.0756 22 14 13.1429 4.4699 6.1084 23 1 12.5918 5.8224 6.3774 24 1 14.4893 4.3527 6.7241 25 1 13.2494 4.2614 4.6420 26 6 8.3735 2.0109 1.9803 27 6 6.1225 2.8933 1.2901 28 8 5.6043 2.9219 2.3863 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.8039 -0.4638 -1.2502 33 1 3.7229 1.0757 -2.1399 34 1 5.2015 0.6381 -1.2503 35 1 3.6864 3.2141 -0.9308 36 1 3.5383 3.2571 0.8425 37 1 6.0903 2.0853 -1.7545 38 1 6.4037 3.8244 -1.4769 39 1 7.9707 1.4209 -0.4956 40 1 8.5591 3.0628 -0.9220 41 1 8.9244 4.5740 0.4961 42 1 7.3730 5.0848 1.2399 43 1 8.0564 4.3619 3.4331 44 1 9.6068 4.9739 2.7751 45 1 8.6793 2.6090 4.6509 46 1 9.7619 1.3251 4.0611 47 1 11.6618 2.9184 4.0798 48 1 10.5792 4.2024 4.6695 49 1 12.9164 3.1334 8.6069 50 1 7.6908 1.5618 2.7017 51 1 8.8826 1.2321 1.4127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:19 Heat of formation + Delta-G solvation = -112.158208 kcal Electronic energy + Delta-G solvation = -30233.161438 eV Core-core repulsion = 26132.647113 eV Total energy + Delta-G solvation = -4100.514325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48792 -40.86142 -38.13565 -37.12642 -36.66995 -35.16188 -33.43459 -32.13752 -30.56855 -29.20608 -28.27922 -28.22039 -26.95402 -25.06335 -24.13428 -23.14943 -21.68727 -21.44270 -20.51621 -19.91735 -18.98668 -18.13565 -17.35864 -16.89782 -16.81212 -16.41185 -16.17264 -15.73232 -15.24774 -15.00589 -14.51848 -14.25805 -14.19412 -13.90099 -13.85113 -13.70405 -13.47417 -13.15663 -12.98394 -12.78017 -12.69767 -12.59576 -12.51054 -12.21853 -12.07667 -11.78657 -11.70110 -11.63256 -11.38090 -11.24160 -11.19152 -11.07176 -10.85220 -10.81477 -10.71992 -9.87323 -9.79809 -9.76840 -9.64854 -9.15630 -9.05815 -8.47897 -7.94838 -5.99027 -3.96833 1.75475 2.06553 2.42326 2.79093 3.35980 3.42867 3.49085 3.97779 4.10101 4.15161 4.31472 4.38274 4.38868 4.49469 4.51037 4.66835 4.72343 4.75311 4.78022 4.85039 4.95950 5.02179 5.09789 5.11626 5.21304 5.30329 5.35491 5.39551 5.45898 5.54773 5.58221 5.63710 5.64364 5.78537 5.85001 5.92958 5.96289 6.04179 6.18535 6.24173 6.28377 6.42093 6.78900 6.82802 7.16896 7.22708 7.27548 7.52429 7.65290 7.89435 7.98466 8.59062 9.05561 9.63466 11.14429 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.002220 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.748020 B =12607.079202 C =13315.378395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.471 3.529 4 O -0.506 6.506 5 C -0.103 4.103 6 H 0.115 0.885 7 C -0.146 4.146 8 C 0.144 3.856 9 N -0.622 5.622 10 C 0.097 3.903 11 C -0.117 4.117 12 C -0.105 4.105 13 C -0.098 4.098 14 C 0.036 3.964 15 N -0.515 5.515 16 C 0.061 3.939 17 C -0.004 4.004 18 C -0.520 4.520 19 H 0.070 0.930 20 C 0.066 3.934 21 N -0.905 5.905 22 Si 0.881 3.119 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.263 1.263 26 C 0.057 3.943 27 C 0.531 3.469 28 O -0.513 6.513 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.085 0.915 45 H 0.032 0.968 46 H 0.066 0.934 47 H 0.024 0.976 48 H 0.010 0.990 49 H 0.262 0.738 50 H 0.052 0.948 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.184 -3.378 -26.757 33.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.393 6.393 5 C -0.124 4.124 6 H 0.133 0.867 7 C -0.204 4.204 8 C 0.021 3.979 9 N -0.357 5.357 10 C -0.026 4.026 11 C -0.155 4.155 12 C -0.109 4.109 13 C -0.136 4.136 14 C -0.092 4.092 15 N -0.239 5.239 16 C -0.066 4.066 17 C -0.042 4.042 18 C -0.558 4.558 19 H 0.088 0.912 20 C -0.135 4.135 21 N -0.544 5.544 22 Si 0.708 3.292 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.187 1.187 26 C -0.072 4.072 27 C 0.318 3.682 28 O -0.387 6.387 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.103 0.897 45 H 0.050 0.950 46 H 0.085 0.915 47 H 0.043 0.957 48 H 0.028 0.972 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.152 -3.084 -26.253 32.643 hybrid contribution -0.523 0.675 0.268 0.895 sum -19.675 -2.409 -25.985 32.682 Atomic orbital electron populations 1.23307 0.76059 1.03878 1.02679 1.86509 1.23617 1.33269 1.83901 1.23585 0.91639 0.81443 0.71969 1.90687 1.67203 1.36282 1.45162 1.21522 0.87460 1.00144 1.03251 0.86735 1.21886 1.02328 1.01135 0.95003 1.21120 0.78994 0.93141 1.04646 1.48333 1.05603 1.74129 1.07592 1.22335 0.89122 1.02289 0.88844 1.22699 0.96328 1.03042 0.93457 1.21554 0.92718 0.99378 0.97261 1.22383 0.99537 0.92843 0.98863 1.23286 0.98191 0.92529 0.95155 1.65029 1.39813 1.01290 1.17793 1.22316 0.99288 0.99869 0.85106 1.19505 0.93511 0.95166 0.95991 1.21105 1.14715 1.24172 0.95854 0.91162 1.25005 0.97275 0.96548 0.94662 1.69923 1.32002 1.43816 1.08645 0.86753 0.80127 0.82124 0.80176 1.20416 1.21495 1.18712 1.22698 0.93222 0.95447 0.95812 1.20589 0.89320 0.74633 0.83622 1.90757 1.74149 1.48841 1.24977 0.91725 0.91817 0.87925 0.90932 0.91920 0.90365 0.89317 0.88871 0.89930 0.90855 0.89546 0.88501 0.89524 0.91298 0.93236 0.89658 0.95006 0.91545 0.95735 0.97188 0.92799 0.93004 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.06 10.47 -39.25 -0.41 -3.47 16 3 C 0.47 4.51 7.26 36.01 0.26 4.77 16 4 O -0.51 -6.05 15.67 -18.75 -0.29 -6.35 16 5 C -0.10 -0.83 3.03 -91.77 -0.28 -1.11 16 6 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 7 C -0.15 -0.79 8.51 37.15 0.32 -0.48 16 8 C 0.14 1.27 4.72 -4.04 -0.02 1.25 16 9 N -0.62 -5.71 2.72 -172.52 -0.47 -6.18 16 10 C 0.10 0.57 6.80 -2.94 -0.02 0.55 16 11 C -0.12 -0.83 6.19 -25.52 -0.16 -0.99 16 12 C -0.11 -1.20 0.77 -155.25 -0.12 -1.32 16 13 C -0.10 -1.16 6.21 -25.27 -0.16 -1.32 16 14 C 0.04 0.58 5.92 -1.73 -0.01 0.57 16 15 N -0.52 -9.01 5.26 -230.62 -1.21 -10.22 16 16 C 0.06 1.30 4.65 -3.82 -0.02 1.29 16 17 C 0.00 -0.10 4.13 -27.88 -0.12 -0.21 16 18 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 19 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -28.51 13.96 55.43 0.77 -27.74 16 22 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 26 C 0.06 0.82 5.99 -3.12 -0.02 0.80 16 27 C 0.53 6.89 6.59 -11.22 -0.07 6.82 16 28 O -0.51 -9.00 17.15 5.55 0.10 -8.90 16 29 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.38 5.65 -51.93 -0.29 0.08 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.05 7.74 -51.93 -0.40 0.65 16 37 H 0.08 0.31 5.90 -51.93 -0.31 0.01 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.54 7.59 -51.93 -0.39 0.15 16 40 H 0.10 0.57 7.45 -51.93 -0.39 0.18 16 41 H 0.09 0.86 7.46 -51.93 -0.39 0.47 16 42 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 43 H 0.05 0.89 7.80 -51.92 -0.41 0.48 16 44 H 0.09 1.38 7.82 -51.93 -0.41 0.97 16 45 H 0.03 0.71 7.83 -51.93 -0.41 0.31 16 46 H 0.07 1.40 8.08 -51.93 -0.42 0.98 16 47 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 48 H 0.01 0.24 6.81 -51.93 -0.35 -0.11 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 50 H 0.05 0.85 7.09 -51.93 -0.37 0.48 16 51 H 0.08 1.04 7.40 -51.93 -0.38 0.66 16 LS Contribution 400.95 15.07 6.04 6.04 Total: -1.00 -36.27 400.95 -8.58 -44.85 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -8.66 Total: -3.78 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 0.23 Total: -1.83 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.91 Total: -44.14 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.61 Total: -18.72 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.27 -8.58 -44.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.306 kcal (2) G-P(sol) polarization free energy of solvation -36.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds