Wall clock time and date at job start Tue Mar 31 2020 21:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 117.00001 * 2 1 4 4 O 1.20826 * 120.00094 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99603 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.46942 * 299.99225 * 5 3 2 7 7 C 1.52993 * 109.47534 * 60.00095 * 5 3 2 8 8 C 1.53001 * 109.46592 * 180.02562 * 5 3 2 9 9 N 1.46499 * 109.46997 * 174.99898 * 8 5 3 10 10 C 1.46882 * 124.37342 * 90.00050 * 9 8 5 11 11 C 1.54706 * 105.51805 * 196.82368 * 10 9 8 12 12 C 1.53612 * 101.51640 * 335.47221 * 11 10 9 13 13 C 1.53609 * 110.85560 * 263.09956 * 12 11 10 14 14 C 1.55161 * 102.66142 * 217.72817 * 13 12 11 15 15 N 1.48617 * 103.36311 * 36.57126 * 14 13 12 16 16 C 1.46905 * 111.00055 * 200.85329 * 15 14 13 17 17 C 1.53006 * 109.46949 * 287.44483 * 16 15 14 18 18 C 1.50699 * 109.47082 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99909 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00112 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00156 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99821 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47197 * 90.00472 * 22 20 18 24 24 H 1.48507 * 109.47160 * 210.00416 * 22 20 18 25 25 H 1.48500 * 109.47430 * 330.00226 * 22 20 18 26 26 C 1.48182 * 105.86498 * 321.39130 * 15 14 13 27 27 C 1.34751 * 124.37269 * 269.69678 * 9 8 5 28 28 O 1.21284 * 125.13058 * 358.96302 * 27 9 8 29 29 H 1.09001 * 109.47157 * 299.99890 * 1 2 3 30 30 H 1.09004 * 109.47122 * 60.00023 * 1 2 3 31 31 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46749 * 300.00022 * 7 5 3 33 33 H 1.09001 * 109.47443 * 59.99171 * 7 5 3 34 34 H 1.08996 * 109.47242 * 180.02562 * 7 5 3 35 35 H 1.08997 * 109.47338 * 294.99460 * 8 5 3 36 36 H 1.09001 * 109.47631 * 55.00057 * 8 5 3 37 37 H 1.09003 * 110.23546 * 315.83171 * 10 9 8 38 38 H 1.08994 * 110.23867 * 77.81076 * 10 9 8 39 39 H 1.09005 * 111.01864 * 93.52809 * 11 10 9 40 40 H 1.09001 * 111.01675 * 217.37001 * 11 10 9 41 41 H 1.09006 * 110.76918 * 336.01800 * 13 12 11 42 42 H 1.08999 * 110.77398 * 99.42668 * 13 12 11 43 43 H 1.09008 * 110.63914 * 278.10148 * 14 13 12 44 44 H 1.09002 * 110.78040 * 155.11358 * 14 13 12 45 45 H 1.08997 * 109.47301 * 47.44525 * 16 15 14 46 46 H 1.08997 * 109.47209 * 167.45143 * 16 15 14 47 47 H 1.08997 * 109.47154 * 300.00133 * 17 16 15 48 48 H 1.09006 * 109.46593 * 60.00018 * 17 16 15 49 49 H 0.96997 * 119.99705 * 180.02562 * 21 20 18 50 50 H 1.09001 * 110.01966 * 265.82297 * 26 15 14 51 51 H 1.08993 * 110.02291 * 144.41867 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1130 0.5815 -1.2501 8 6 4.0002 2.7420 0.0002 9 7 5.4582 2.8201 0.1200 10 6 6.3843 2.8351 -1.0199 11 6 7.7724 2.4908 -0.4300 12 6 7.6021 2.9309 1.0318 13 6 8.1702 4.3416 1.2480 14 6 8.8117 4.2377 2.6570 15 7 9.3661 2.8590 2.6812 16 6 9.5713 2.3983 4.0610 17 6 10.7698 3.1291 4.6697 18 6 10.9800 2.6570 6.0853 19 1 10.3246 1.9100 6.5083 20 6 12.0089 3.1785 6.8404 21 7 12.1927 2.7661 8.0756 22 14 13.1429 4.4699 6.1084 23 1 12.5918 5.8224 6.3774 24 1 14.4893 4.3527 6.7241 25 1 13.2494 4.2614 4.6420 26 6 8.3735 2.0109 1.9803 27 6 6.1225 2.8933 1.2901 28 8 5.6043 2.9219 2.3863 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.8039 -0.4638 -1.2502 33 1 3.7229 1.0757 -2.1399 34 1 5.2015 0.6381 -1.2503 35 1 3.6864 3.2141 -0.9308 36 1 3.5383 3.2571 0.8425 37 1 6.0903 2.0853 -1.7545 38 1 6.4037 3.8244 -1.4769 39 1 7.9707 1.4209 -0.4956 40 1 8.5591 3.0628 -0.9220 41 1 8.9244 4.5740 0.4961 42 1 7.3730 5.0848 1.2399 43 1 8.0564 4.3619 3.4331 44 1 9.6068 4.9739 2.7751 45 1 8.6793 2.6090 4.6509 46 1 9.7619 1.3251 4.0611 47 1 11.6618 2.9184 4.0798 48 1 10.5792 4.2024 4.6695 49 1 12.9164 3.1334 8.6069 50 1 7.6908 1.5618 2.7017 51 1 8.8826 1.2321 1.4127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:18 Heat of formation + Delta-G solvation = -137.807613 kcal Electronic energy + Delta-G solvation = -30234.273680 eV Core-core repulsion = 26132.647113 eV Total energy + Delta-G solvation = -4101.626567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.35367 -41.63688 -39.29335 -37.96109 -37.55122 -36.20089 -35.14661 -33.64932 -31.78465 -30.61665 -29.26072 -28.79193 -27.59342 -26.57351 -25.13037 -23.98171 -23.20880 -22.28692 -21.58645 -21.27983 -19.91127 -19.01632 -18.86060 -18.05480 -17.57607 -17.34905 -16.99775 -16.72807 -16.48521 -16.10209 -15.83853 -15.69562 -15.19123 -14.97552 -14.80914 -14.73290 -14.54290 -14.28006 -14.10994 -13.89647 -13.70821 -13.44599 -13.37354 -13.17315 -13.07302 -12.88512 -12.79426 -12.61607 -12.47033 -12.40870 -12.27778 -12.07103 -11.87926 -11.81079 -11.65683 -11.61057 -11.53799 -11.45059 -11.41013 -10.77249 -10.74509 -9.79787 -9.43604 -8.30691 -6.35899 1.01156 1.30613 1.36392 1.38855 1.52670 1.54818 2.07808 2.36893 2.99898 3.04424 3.31708 3.37470 3.45001 3.55265 3.69530 3.79997 3.92179 4.03072 4.11556 4.24316 4.27015 4.27530 4.30953 4.39209 4.45362 4.47555 4.52081 4.62565 4.64402 4.66821 4.69088 4.80827 4.82693 4.87575 4.92403 4.94485 4.97409 5.08958 5.17613 5.20409 5.23682 5.24765 5.29739 5.42226 5.52623 5.60613 5.93207 6.00445 6.04270 6.26886 6.55778 6.71166 7.06117 7.28674 8.86274 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.002220 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.748020 B =12607.079202 C =13315.378395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.099 4.099 6 H 0.098 0.902 7 C -0.140 4.140 8 C 0.144 3.856 9 N -0.610 5.610 10 C 0.093 3.907 11 C -0.107 4.107 12 C -0.103 4.103 13 C -0.085 4.085 14 C 0.027 3.973 15 N -0.512 5.512 16 C 0.075 3.925 17 C 0.006 3.994 18 C -0.537 4.537 19 H 0.026 0.974 20 C 0.003 3.997 21 N -0.951 5.951 22 Si 0.957 3.043 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.242 1.242 26 C 0.055 3.945 27 C 0.520 3.480 28 O -0.576 6.576 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.132 0.868 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.073 0.927 43 H 0.016 0.984 44 H 0.086 0.914 45 H 0.005 0.995 46 H 0.061 0.939 47 H 0.030 0.970 48 H 0.014 0.986 49 H 0.267 0.733 50 H 0.021 0.979 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.180 -2.759 -31.778 36.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.315 3.685 4 O -0.425 6.425 5 C -0.119 4.119 6 H 0.116 0.884 7 C -0.197 4.197 8 C 0.022 3.978 9 N -0.342 5.342 10 C -0.028 4.028 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.123 4.123 14 C -0.101 4.101 15 N -0.236 5.236 16 C -0.054 4.054 17 C -0.031 4.031 18 C -0.576 4.576 19 H 0.044 0.956 20 C -0.194 4.194 21 N -0.592 5.592 22 Si 0.780 3.220 23 H -0.193 1.193 24 H -0.206 1.206 25 H -0.165 1.165 26 C -0.073 4.073 27 C 0.308 3.692 28 O -0.455 6.455 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.150 0.850 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.077 0.923 37 H 0.133 0.867 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.091 0.909 43 H 0.035 0.965 44 H 0.104 0.896 45 H 0.023 0.977 46 H 0.080 0.920 47 H 0.048 0.952 48 H 0.033 0.967 49 H 0.076 0.924 50 H 0.039 0.961 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.166 -2.492 -31.349 36.317 hybrid contribution -0.980 0.385 1.906 2.178 sum -19.146 -2.107 -29.443 35.183 Atomic orbital electron populations 1.23575 0.74660 1.05809 1.02566 1.86502 1.25075 1.32668 1.83470 1.23883 0.92207 0.81292 0.71073 1.90672 1.67949 1.37210 1.46709 1.21487 0.86582 0.99669 1.04200 0.88423 1.21901 1.02936 1.01074 0.93768 1.21110 0.78712 0.93669 1.04339 1.48394 1.06075 1.72086 1.07643 1.22700 0.87471 1.04765 0.87830 1.22787 0.97761 1.04388 0.89532 1.21542 0.91003 0.98467 0.99707 1.22386 1.00145 0.93277 0.96507 1.23377 0.97633 0.91720 0.97398 1.64987 1.41338 1.02495 1.14731 1.21975 0.96833 0.99236 0.87326 1.19347 0.94963 0.95449 0.93374 1.21424 1.14248 1.23523 0.98384 0.95595 1.26063 0.99173 0.99163 0.94972 1.70080 1.33103 1.45596 1.10416 0.85558 0.77507 0.78696 0.80289 1.19318 1.20641 1.16505 1.22811 0.92563 0.96192 0.95761 1.20981 0.90386 0.74154 0.83654 1.90726 1.75326 1.51900 1.27588 0.92532 0.91295 0.85018 0.90623 0.90299 0.89109 0.86846 0.92312 0.86735 0.88619 0.88119 0.85883 0.86132 0.90870 0.96522 0.89576 0.97712 0.92017 0.95155 0.96747 0.92392 0.96090 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.97 10.47 -51.40 -0.54 -6.51 16 3 C 0.47 8.93 7.26 71.24 0.52 9.44 16 4 O -0.54 -12.99 15.67 21.96 0.34 -12.64 16 5 C -0.10 -1.51 3.03 -11.54 -0.03 -1.55 16 6 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 7 C -0.14 -1.08 8.51 71.98 0.61 -0.47 16 8 C 0.14 2.43 4.72 86.38 0.41 2.83 16 9 N -0.61 -9.96 2.72 -818.13 -2.22 -12.19 16 10 C 0.09 0.63 6.80 86.89 0.59 1.22 16 11 C -0.11 -0.97 6.19 31.38 0.19 -0.77 16 12 C -0.10 -2.14 0.77 -52.66 -0.04 -2.19 16 13 C -0.09 -1.81 6.21 31.54 0.20 -1.61 16 14 C 0.03 0.85 5.92 86.71 0.51 1.37 16 15 N -0.51 -17.74 5.26 -883.54 -4.64 -22.38 16 16 C 0.07 3.30 4.65 86.30 0.40 3.71 16 17 C 0.01 0.32 4.13 29.85 0.12 0.45 16 18 C -0.54 -32.87 9.66 25.60 0.25 -32.62 16 19 H 0.03 1.75 7.99 -2.91 -0.02 1.72 16 20 C 0.00 0.18 5.47 84.65 0.46 0.64 16 21 N -0.95 -61.79 13.96 21.45 0.30 -61.49 16 22 Si 0.96 45.75 27.47 68.60 1.88 47.63 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.24 -10.69 6.54 99.48 0.65 -10.04 16 26 C 0.05 1.54 5.99 86.06 0.52 2.06 16 27 C 0.52 13.39 6.59 87.52 0.58 13.97 16 28 O -0.58 -21.66 17.15 -3.04 -0.05 -21.72 16 29 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 30 H 0.07 0.70 8.13 -2.38 -0.02 0.68 16 31 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.58 8.11 -2.39 -0.02 0.57 16 33 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.09 0.48 5.65 -2.39 -0.01 0.47 16 35 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.41 7.74 -2.39 -0.02 1.39 16 37 H 0.11 0.15 5.90 -2.39 -0.01 0.14 16 38 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.10 0.70 7.59 -2.38 -0.02 0.68 16 40 H 0.12 0.60 7.45 -2.39 -0.02 0.58 16 41 H 0.12 1.79 7.46 -2.38 -0.02 1.77 16 42 H 0.07 1.52 7.84 -2.39 -0.02 1.51 16 43 H 0.02 0.63 7.80 -2.38 -0.02 0.61 16 44 H 0.09 2.70 7.82 -2.39 -0.02 2.68 16 45 H 0.00 0.22 7.83 -2.39 -0.02 0.21 16 46 H 0.06 2.73 8.08 -2.39 -0.02 2.71 16 47 H 0.03 1.49 7.20 -2.39 -0.02 1.47 16 48 H 0.01 0.70 6.81 -2.38 -0.02 0.69 16 49 H 0.27 16.08 8.31 -92.71 -0.77 15.30 16 50 H 0.02 0.72 7.09 -2.39 -0.02 0.70 16 51 H 0.11 2.47 7.40 -2.39 -0.02 2.45 16 Total: -1.00 -86.15 400.95 2.40 -83.75 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.85 Total: 7.58 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 6.48 Total: -2.03 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -6.57 Total: -96.06 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -0.25 Total: -40.86 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.88 Total: 47.63 kcal Total: -86.15 2.40 -83.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.062 kcal (2) G-P(sol) polarization free energy of solvation -86.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds