Wall clock time and date at job start Tue Mar 31 2020 21:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 117.00150 * 2 1 4 4 O 1.20830 * 119.99666 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00244 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47130 * 300.00563 * 5 3 2 7 7 C 1.53001 * 109.46897 * 60.00399 * 5 3 2 8 8 C 1.53004 * 109.47277 * 180.02562 * 5 3 2 9 9 N 1.46499 * 109.47253 * 174.39635 * 8 5 3 10 10 C 1.33347 * 117.28970 * 95.87315 * 9 8 5 11 11 O 1.21281 * 118.79998 * 359.73438 * 10 9 8 12 12 C 1.50345 * 122.39713 * 179.75916 * 10 9 8 13 13 C 1.52889 * 109.30547 * 338.33742 * 12 10 9 14 14 C 1.54911 * 109.57587 * 53.00408 * 13 12 10 15 15 H 1.09000 * 112.13609 * 59.36025 * 14 13 12 16 16 C 1.44630 * 117.28702 * 275.85633 * 9 8 5 17 17 H 1.09004 * 110.33731 * 45.57944 * 16 9 8 18 18 C 1.54882 * 110.63163 * 283.09594 * 16 9 8 19 19 C 1.54522 * 102.59628 * 202.59498 * 18 16 9 20 20 N 1.47657 * 107.05087 * 22.99610 * 19 18 16 21 21 C 1.46902 * 110.99851 * 123.12698 * 20 19 18 22 22 C 1.53001 * 109.47310 * 69.87343 * 21 20 19 23 23 C 1.50698 * 109.47155 * 180.02562 * 22 21 20 24 24 H 1.08004 * 120.00195 * 359.97438 * 23 22 21 25 25 C 1.37876 * 120.00089 * 179.97438 * 23 22 21 26 26 N 1.31512 * 119.99783 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99926 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47050 * 90.00107 * 27 25 23 29 29 H 1.48498 * 109.46944 * 209.99934 * 27 25 23 30 30 H 1.48497 * 109.47475 * 329.99903 * 27 25 23 31 31 H 1.08999 * 109.47547 * 59.99769 * 1 2 3 32 32 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46926 * 299.99306 * 1 2 3 34 34 H 1.09000 * 109.46970 * 65.38468 * 7 5 3 35 35 H 1.09006 * 109.46979 * 185.37931 * 7 5 3 36 36 H 1.08996 * 109.47238 * 305.38195 * 7 5 3 37 37 H 1.09000 * 109.47218 * 54.39350 * 8 5 3 38 38 H 1.09005 * 109.46707 * 294.39246 * 8 5 3 39 39 H 1.08995 * 109.50173 * 98.29115 * 12 10 9 40 40 H 1.09000 * 109.49452 * 218.39117 * 12 10 9 41 41 H 1.09004 * 109.49051 * 172.81612 * 13 12 10 42 42 H 1.08998 * 109.49584 * 292.89348 * 13 12 10 43 43 H 1.09008 * 110.78637 * 84.31794 * 18 16 9 44 44 H 1.09001 * 110.78444 * 320.87000 * 18 16 9 45 45 H 1.09006 * 109.91737 * 263.64337 * 19 18 16 46 46 H 1.08997 * 109.91782 * 142.34679 * 19 18 16 47 47 H 1.09005 * 109.46709 * 189.87387 * 21 20 19 48 48 H 1.09000 * 109.47130 * 309.87295 * 21 20 19 49 49 H 1.09004 * 109.46781 * 299.99501 * 22 21 20 50 50 H 1.08994 * 109.47395 * 59.99634 * 22 21 20 51 51 H 0.97005 * 120.00006 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7805 0.8891 7 6 4.1128 0.5816 -1.2503 8 6 4.0001 2.7421 0.0002 9 7 5.4568 2.8206 0.1345 10 6 6.1685 2.9425 -0.9866 11 8 5.5841 2.9771 -2.0488 12 6 7.6689 3.0381 -0.9819 13 6 8.1410 3.5095 0.3938 14 6 7.5370 2.5972 1.4905 15 1 7.8267 1.5542 1.3626 16 6 6.0036 2.7597 1.4721 17 1 5.5298 1.9583 2.0389 18 6 5.8217 4.1157 2.1982 19 6 6.9196 4.0662 3.2844 20 7 7.9461 3.1122 2.8193 21 6 9.2670 3.7516 2.7523 22 6 9.7690 4.0350 4.1695 23 6 11.1238 4.6915 4.1007 24 1 11.5813 4.8866 3.1420 25 6 11.7793 5.0430 5.2616 26 7 11.2220 4.8059 6.4290 27 14 13.4589 5.8560 5.1763 28 1 13.2927 7.3306 5.1176 29 1 14.2458 5.4942 6.3825 30 1 14.1735 5.3897 3.9609 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 3.8007 1.1328 -2.1373 35 1 5.2015 0.5544 -1.2038 36 1 3.7256 -0.4361 -1.2999 37 1 3.5297 3.2596 0.8362 38 1 3.6957 3.2114 -0.9354 39 1 8.0965 2.0590 -1.1976 40 1 7.9903 3.7513 -1.7409 41 1 9.2288 3.4580 0.4423 42 1 7.8175 4.5375 0.5568 43 1 4.8323 4.1824 2.6509 44 1 5.9919 4.9468 1.5138 45 1 6.4938 3.7231 4.2274 46 1 7.3613 5.0545 3.4112 47 1 9.9668 3.0873 2.2450 48 1 9.1898 4.6881 2.2001 49 1 9.0692 4.6993 4.6767 50 1 9.8462 3.0985 4.7218 51 1 11.6833 5.0529 7.2458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039474.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:47 Heat of formation + Delta-G solvation = -116.953556 kcal Electronic energy + Delta-G solvation = -30824.552468 eV Core-core repulsion = 26723.830201 eV Total energy + Delta-G solvation = -4100.722267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45030 -40.68837 -38.79249 -37.04219 -36.01616 -34.40193 -33.17957 -32.87795 -31.19312 -28.71484 -28.17492 -27.81492 -26.97298 -24.61928 -24.38655 -23.39373 -21.82360 -21.73056 -20.61969 -19.28264 -18.39458 -17.84586 -17.24737 -16.96689 -16.64564 -16.50293 -16.43261 -15.66174 -15.35131 -14.67044 -14.62057 -14.49766 -14.24631 -13.97369 -13.63391 -13.39788 -13.26773 -13.20275 -12.84617 -12.71839 -12.58821 -12.30635 -12.25973 -12.01318 -11.86304 -11.72882 -11.58161 -11.39776 -11.25201 -11.14928 -11.05431 -10.96484 -10.87194 -10.71210 -10.59270 -10.56151 -9.90255 -9.69933 -9.44141 -9.16724 -8.91563 -8.38074 -7.87131 -6.03211 -4.05974 1.86132 2.19648 2.50374 2.89021 3.29288 3.36100 3.38657 4.15654 4.20643 4.34905 4.41609 4.51150 4.52866 4.54699 4.63724 4.74090 4.82106 4.82742 4.89626 5.03408 5.10221 5.16020 5.17342 5.28976 5.33010 5.40618 5.41703 5.47516 5.49660 5.62732 5.65148 5.75565 5.77801 5.90121 5.92631 6.03970 6.08394 6.09650 6.16846 6.20492 6.35527 6.41061 6.88733 7.25546 7.33005 7.37820 7.38894 7.70484 7.83215 8.00011 8.03144 8.38201 9.01376 9.58056 11.07988 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022459 B = 0.002355 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.396016 B =11885.108004 C =12641.732850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.471 3.529 4 O -0.506 6.506 5 C -0.098 4.098 6 H 0.111 0.889 7 C -0.136 4.136 8 C 0.119 3.881 9 N -0.588 5.588 10 C 0.521 3.479 11 O -0.550 6.550 12 C -0.132 4.132 13 C -0.151 4.151 14 C 0.069 3.931 15 H 0.100 0.900 16 C 0.133 3.867 17 H 0.096 0.904 18 C -0.155 4.155 19 C 0.045 3.955 20 N -0.519 5.519 21 C 0.058 3.942 22 C 0.028 3.972 23 C -0.522 4.522 24 H 0.053 0.947 25 C 0.058 3.942 26 N -0.892 5.892 27 Si 0.891 3.109 28 H -0.281 1.281 29 H -0.286 1.286 30 H -0.274 1.274 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.027 0.973 49 H 0.016 0.984 50 H 0.024 0.976 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.814 -9.299 -13.339 24.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.314 3.686 4 O -0.393 6.393 5 C -0.119 4.119 6 H 0.129 0.871 7 C -0.193 4.193 8 C -0.005 4.005 9 N -0.319 5.319 10 C 0.311 3.689 11 O -0.428 6.428 12 C -0.172 4.172 13 C -0.190 4.190 14 C -0.040 4.040 15 H 0.118 0.882 16 C 0.029 3.971 17 H 0.114 0.886 18 C -0.194 4.194 19 C -0.083 4.083 20 N -0.242 5.242 21 C -0.069 4.069 22 C -0.009 4.009 23 C -0.561 4.561 24 H 0.072 0.928 25 C -0.143 4.143 26 N -0.531 5.531 27 Si 0.719 3.281 28 H -0.207 1.207 29 H -0.212 1.212 30 H -0.199 1.199 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.046 0.954 49 H 0.034 0.966 50 H 0.043 0.957 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.217 -9.368 -13.328 24.439 hybrid contribution 0.685 1.225 -0.275 1.430 sum -17.532 -8.143 -13.604 23.638 Atomic orbital electron populations 1.23287 0.76215 1.03772 1.02641 1.86506 1.23493 1.33382 1.83986 1.23627 0.91709 0.81367 0.71936 1.90684 1.67203 1.36288 1.45116 1.21435 0.87264 1.00080 1.03087 0.87076 1.21730 1.01857 1.00217 0.95528 1.21368 0.80467 0.93298 1.05359 1.46896 1.06606 1.72093 1.06312 1.20296 0.90566 0.75064 0.83001 1.90705 1.71768 1.50640 1.29703 1.21623 0.91209 1.04624 0.99772 1.22610 1.02908 1.00362 0.93113 1.23181 0.91544 0.99676 0.89583 0.88175 1.21801 0.95182 0.98508 0.81640 0.88609 1.23289 1.00420 0.97062 0.98632 1.22860 0.91393 0.96537 0.97516 1.64020 1.03471 1.35682 1.21040 1.22553 0.87132 0.95507 1.01669 1.19082 0.95174 0.97162 0.89494 1.21166 1.03042 1.39553 0.92379 0.92824 1.24990 0.97853 0.95946 0.95514 1.69969 1.38326 1.47521 0.97278 0.86611 0.84251 0.79663 0.77557 1.20733 1.21207 1.19891 0.91851 0.88014 0.91791 0.91250 0.91305 0.91593 0.89537 0.88099 0.88148 0.88165 0.89332 0.91026 0.90590 0.91034 0.90321 0.91573 0.91906 0.95448 0.96587 0.95736 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.28 10.37 -39.25 -0.41 -3.69 16 3 C 0.47 4.89 7.25 36.00 0.26 5.15 16 4 O -0.51 -6.48 15.66 -18.75 -0.29 -6.77 16 5 C -0.10 -0.90 2.99 -91.77 -0.27 -1.17 16 6 H 0.11 0.86 7.68 -51.93 -0.40 0.46 16 7 C -0.14 -1.25 7.91 37.16 0.29 -0.95 16 8 C 0.12 1.23 4.09 -4.04 -0.02 1.22 16 9 N -0.59 -6.22 2.33 -166.15 -0.39 -6.61 16 10 C 0.52 6.23 6.24 -11.79 -0.07 6.15 16 11 O -0.55 -8.04 14.73 5.56 0.08 -7.95 16 12 C -0.13 -1.36 6.09 -28.11 -0.17 -1.53 16 13 C -0.15 -1.75 3.94 -25.78 -0.10 -1.86 16 14 C 0.07 0.84 3.56 -65.31 -0.23 0.61 16 15 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 16 C 0.13 1.41 3.10 -67.30 -0.21 1.20 16 17 H 0.10 0.92 7.68 -51.93 -0.40 0.52 16 18 C -0.15 -1.75 5.79 -24.94 -0.14 -1.90 16 19 C 0.05 0.65 6.19 -2.61 -0.02 0.64 16 20 N -0.52 -8.13 5.16 -221.97 -1.14 -9.27 16 21 C 0.06 1.10 3.29 -3.82 -0.01 1.08 16 22 C 0.03 0.70 5.00 -27.88 -0.14 0.56 16 23 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 24 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 25 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 26 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 27 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 30 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 31 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 34 H 0.07 0.74 7.78 -51.93 -0.40 0.34 16 35 H 0.07 0.66 6.93 -51.93 -0.36 0.30 16 36 H 0.07 0.53 7.99 -51.93 -0.41 0.11 16 37 H 0.09 0.87 7.61 -51.93 -0.40 0.47 16 38 H 0.10 1.25 6.95 -51.93 -0.36 0.89 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.08 6.49 -51.93 -0.34 0.75 16 42 H 0.07 0.91 6.57 -51.93 -0.34 0.57 16 43 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 44 H 0.07 0.86 7.34 -51.93 -0.38 0.48 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.07 1.08 6.92 -51.93 -0.36 0.72 16 47 H 0.06 1.17 7.35 -51.93 -0.38 0.79 16 48 H 0.03 0.51 6.80 -51.93 -0.35 0.16 16 49 H 0.02 0.41 7.14 -51.93 -0.37 0.04 16 50 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 393.51 15.07 5.93 5.93 Total: -1.00 -31.94 393.51 -9.29 -41.23 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.60 Total: -1.03 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -0.18 Total: -2.50 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: -0.79 Total: -41.36 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.62 Total: -18.41 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.94 -9.29 -41.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039474.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.723 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds