Wall clock time and date at job start Tue Mar 31 2020 21:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 117.00150 * 2 1 4 4 O 1.20830 * 119.99666 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00244 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47130 * 300.00563 * 5 3 2 7 7 C 1.53001 * 109.46897 * 60.00399 * 5 3 2 8 8 C 1.53004 * 109.47277 * 180.02562 * 5 3 2 9 9 N 1.46499 * 109.47253 * 174.39635 * 8 5 3 10 10 C 1.33347 * 117.28970 * 95.87315 * 9 8 5 11 11 O 1.21281 * 118.79998 * 359.73438 * 10 9 8 12 12 C 1.50345 * 122.39713 * 179.75916 * 10 9 8 13 13 C 1.52889 * 109.30547 * 338.33742 * 12 10 9 14 14 C 1.54911 * 109.57587 * 53.00408 * 13 12 10 15 15 H 1.09000 * 112.13609 * 59.36025 * 14 13 12 16 16 C 1.44630 * 117.28702 * 275.85633 * 9 8 5 17 17 H 1.09004 * 110.33731 * 45.57944 * 16 9 8 18 18 C 1.54882 * 110.63163 * 283.09594 * 16 9 8 19 19 C 1.54522 * 102.59628 * 202.59498 * 18 16 9 20 20 N 1.47657 * 107.05087 * 22.99610 * 19 18 16 21 21 C 1.46902 * 110.99851 * 123.12698 * 20 19 18 22 22 C 1.53001 * 109.47310 * 69.87343 * 21 20 19 23 23 C 1.50698 * 109.47155 * 180.02562 * 22 21 20 24 24 H 1.08004 * 120.00195 * 359.97438 * 23 22 21 25 25 C 1.37876 * 120.00089 * 179.97438 * 23 22 21 26 26 N 1.31512 * 119.99783 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99926 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47050 * 90.00107 * 27 25 23 29 29 H 1.48498 * 109.46944 * 209.99934 * 27 25 23 30 30 H 1.48497 * 109.47475 * 329.99903 * 27 25 23 31 31 H 1.08999 * 109.47547 * 59.99769 * 1 2 3 32 32 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46926 * 299.99306 * 1 2 3 34 34 H 1.09000 * 109.46970 * 65.38468 * 7 5 3 35 35 H 1.09006 * 109.46979 * 185.37931 * 7 5 3 36 36 H 1.08996 * 109.47238 * 305.38195 * 7 5 3 37 37 H 1.09000 * 109.47218 * 54.39350 * 8 5 3 38 38 H 1.09005 * 109.46707 * 294.39246 * 8 5 3 39 39 H 1.08995 * 109.50173 * 98.29115 * 12 10 9 40 40 H 1.09000 * 109.49452 * 218.39117 * 12 10 9 41 41 H 1.09004 * 109.49051 * 172.81612 * 13 12 10 42 42 H 1.08998 * 109.49584 * 292.89348 * 13 12 10 43 43 H 1.09008 * 110.78637 * 84.31794 * 18 16 9 44 44 H 1.09001 * 110.78444 * 320.87000 * 18 16 9 45 45 H 1.09006 * 109.91737 * 263.64337 * 19 18 16 46 46 H 1.08997 * 109.91782 * 142.34679 * 19 18 16 47 47 H 1.09005 * 109.46709 * 189.87387 * 21 20 19 48 48 H 1.09000 * 109.47130 * 309.87295 * 21 20 19 49 49 H 1.09004 * 109.46781 * 299.99501 * 22 21 20 50 50 H 1.08994 * 109.47395 * 59.99634 * 22 21 20 51 51 H 0.97005 * 120.00006 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7805 0.8891 7 6 4.1128 0.5816 -1.2503 8 6 4.0001 2.7421 0.0002 9 7 5.4568 2.8206 0.1345 10 6 6.1685 2.9425 -0.9866 11 8 5.5841 2.9771 -2.0488 12 6 7.6689 3.0381 -0.9819 13 6 8.1410 3.5095 0.3938 14 6 7.5370 2.5972 1.4905 15 1 7.8267 1.5542 1.3626 16 6 6.0036 2.7597 1.4721 17 1 5.5298 1.9583 2.0389 18 6 5.8217 4.1157 2.1982 19 6 6.9196 4.0662 3.2844 20 7 7.9461 3.1122 2.8193 21 6 9.2670 3.7516 2.7523 22 6 9.7690 4.0350 4.1695 23 6 11.1238 4.6915 4.1007 24 1 11.5813 4.8866 3.1420 25 6 11.7793 5.0430 5.2616 26 7 11.2220 4.8059 6.4290 27 14 13.4589 5.8560 5.1763 28 1 13.2927 7.3306 5.1176 29 1 14.2458 5.4942 6.3825 30 1 14.1735 5.3897 3.9609 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 3.8007 1.1328 -2.1373 35 1 5.2015 0.5544 -1.2038 36 1 3.7256 -0.4361 -1.2999 37 1 3.5297 3.2596 0.8362 38 1 3.6957 3.2114 -0.9354 39 1 8.0965 2.0590 -1.1976 40 1 7.9903 3.7513 -1.7409 41 1 9.2288 3.4580 0.4423 42 1 7.8175 4.5375 0.5568 43 1 4.8323 4.1824 2.6509 44 1 5.9919 4.9468 1.5138 45 1 6.4938 3.7231 4.2274 46 1 7.3613 5.0545 3.4112 47 1 9.9668 3.0873 2.2450 48 1 9.1898 4.6881 2.2001 49 1 9.0692 4.6993 4.6767 50 1 9.8462 3.0985 4.7218 51 1 11.6833 5.0529 7.2458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039474.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:46 Heat of formation + Delta-G solvation = -136.619362 kcal Electronic energy + Delta-G solvation = -30825.405242 eV Core-core repulsion = 26723.830201 eV Total energy + Delta-G solvation = -4101.575040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.37344 -41.51485 -39.88703 -37.81562 -36.99022 -35.73019 -34.75253 -33.87184 -32.64149 -30.11755 -29.06648 -28.68985 -27.79669 -26.28650 -25.34393 -24.23777 -23.36060 -22.75912 -21.48277 -20.58364 -19.27082 -18.71906 -18.51533 -18.03553 -17.83341 -17.39351 -17.38587 -16.73286 -16.52119 -16.31323 -15.80057 -15.41043 -15.11914 -14.97702 -14.81290 -14.48788 -14.38006 -14.15051 -14.07941 -13.71713 -13.66383 -13.33634 -13.19837 -13.07626 -12.98787 -12.86630 -12.74514 -12.66076 -12.52077 -12.41533 -12.21684 -12.17563 -11.91738 -11.82486 -11.75153 -11.52772 -11.45233 -11.28484 -11.20392 -10.65032 -10.51662 -9.82890 -9.15140 -8.16881 -6.27180 1.07516 1.42326 1.42940 1.43691 1.53874 1.59298 2.05589 2.42490 3.07915 3.17112 3.32927 3.49197 3.53903 3.63502 3.75770 3.84156 3.88010 4.09808 4.14275 4.19141 4.23876 4.29841 4.32155 4.34153 4.45848 4.50969 4.57290 4.65213 4.67075 4.71544 4.77530 4.79156 4.83475 4.86525 4.89381 4.94725 5.03122 5.12538 5.18675 5.21198 5.29191 5.32669 5.38487 5.50690 5.70894 5.82714 6.10324 6.17164 6.35592 6.40252 6.62558 6.91108 7.07878 7.41814 8.94965 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022459 B = 0.002355 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.396016 B =11885.108004 C =12641.732850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.474 3.526 4 O -0.536 6.536 5 C -0.093 4.093 6 H 0.134 0.866 7 C -0.129 4.129 8 C 0.122 3.878 9 N -0.580 5.580 10 C 0.519 3.481 11 O -0.578 6.578 12 C -0.123 4.123 13 C -0.145 4.145 14 C 0.070 3.930 15 H 0.116 0.884 16 C 0.143 3.857 17 H 0.117 0.883 18 C -0.144 4.144 19 C 0.045 3.955 20 N -0.530 5.530 21 C 0.080 3.920 22 C 0.035 3.965 23 C -0.539 4.539 24 H 0.061 0.939 25 C 0.001 3.999 26 N -0.931 5.931 27 Si 0.961 3.039 28 H -0.275 1.275 29 H -0.284 1.284 30 H -0.262 1.262 31 H 0.060 0.940 32 H 0.132 0.868 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.040 0.960 47 H 0.068 0.932 48 H 0.028 0.972 49 H -0.010 1.010 50 H -0.008 1.008 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.812 -10.395 -14.352 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.113 4.113 6 H 0.151 0.849 7 C -0.186 4.186 8 C -0.002 4.002 9 N -0.310 5.310 10 C 0.310 3.690 11 O -0.459 6.459 12 C -0.163 4.163 13 C -0.184 4.184 14 C -0.039 4.039 15 H 0.134 0.866 16 C 0.039 3.961 17 H 0.135 0.865 18 C -0.183 4.183 19 C -0.083 4.083 20 N -0.254 5.254 21 C -0.048 4.048 22 C -0.003 4.003 23 C -0.578 4.578 24 H 0.079 0.921 25 C -0.197 4.197 26 N -0.571 5.571 27 Si 0.786 3.214 28 H -0.201 1.201 29 H -0.210 1.210 30 H -0.186 1.186 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.059 0.941 47 H 0.087 0.913 48 H 0.046 0.954 49 H 0.009 0.991 50 H 0.011 0.989 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.226 -10.483 -14.349 25.455 hybrid contribution 0.599 1.538 0.060 1.652 sum -17.627 -8.945 -14.289 24.390 Atomic orbital electron populations 1.23564 0.74736 1.05775 1.02522 1.86495 1.24982 1.32581 1.83503 1.23814 0.92097 0.81283 0.71066 1.90675 1.67917 1.37282 1.46666 1.21403 0.86653 0.99214 1.04005 0.84857 1.21649 1.01656 1.00640 0.94648 1.21304 0.80144 0.94281 1.04439 1.46825 1.06678 1.71497 1.06012 1.20570 0.91166 0.74516 0.82778 1.90707 1.72365 1.52072 1.30746 1.21599 0.90000 1.05889 0.98859 1.22500 1.02534 0.99544 0.93785 1.23277 0.92652 1.00270 0.87679 0.86610 1.21749 0.94251 0.98541 0.81591 0.86536 1.23199 1.00113 0.97448 0.97549 1.22809 0.91939 0.94924 0.98655 1.63880 1.02375 1.35478 1.23637 1.22113 0.89036 0.95981 0.97658 1.18926 0.94180 0.94676 0.92470 1.21633 1.04119 1.39315 0.92734 0.92073 1.25925 1.02009 0.96635 0.95169 1.70106 1.40150 1.48834 0.98032 0.85502 0.79310 0.78661 0.77894 1.20065 1.21000 1.18587 0.92129 0.84997 0.91824 0.93183 0.91462 0.90231 0.89003 0.90278 0.86076 0.87662 0.89758 0.92330 0.88685 0.91619 0.90551 0.94103 0.91346 0.95361 0.99131 0.98915 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.94 10.37 -51.39 -0.53 -6.47 16 3 C 0.47 9.18 7.25 71.23 0.52 9.70 16 4 O -0.54 -13.39 15.66 21.95 0.34 -13.05 16 5 C -0.09 -1.51 2.99 -11.54 -0.03 -1.55 16 6 H 0.13 1.62 7.68 -2.39 -0.02 1.60 16 7 C -0.13 -2.14 7.91 71.98 0.57 -1.57 16 8 C 0.12 2.36 4.09 86.38 0.35 2.72 16 9 N -0.58 -11.15 2.33 -798.77 -1.86 -13.01 16 10 C 0.52 11.55 6.24 87.77 0.55 12.10 16 11 O -0.58 -16.39 14.73 -3.03 -0.04 -16.44 16 12 C -0.12 -2.28 6.09 29.70 0.18 -2.10 16 13 C -0.14 -3.12 3.94 31.21 0.12 -3.00 16 14 C 0.07 1.54 3.56 45.72 0.16 1.71 16 15 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 16 C 0.14 2.68 3.10 46.39 0.14 2.83 16 17 H 0.12 1.81 7.68 -2.39 -0.02 1.79 16 18 C -0.14 -3.05 5.79 31.76 0.18 -2.87 16 19 C 0.04 1.30 6.19 86.68 0.54 1.83 16 20 N -0.53 -16.28 5.16 -856.18 -4.41 -20.70 16 21 C 0.08 3.01 3.29 86.30 0.28 3.29 16 22 C 0.03 1.77 5.00 29.85 0.15 1.92 16 23 C -0.54 -29.65 9.11 25.60 0.23 -29.41 16 24 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 25 C 0.00 0.03 5.46 84.65 0.46 0.49 16 26 N -0.93 -55.88 13.29 21.45 0.28 -55.60 16 27 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 28 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 29 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 30 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 31 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 32 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 34 H 0.05 1.03 7.78 -2.39 -0.02 1.02 16 35 H 0.07 1.15 6.93 -2.38 -0.02 1.13 16 36 H 0.08 1.10 7.99 -2.39 -0.02 1.08 16 37 H 0.09 1.69 7.61 -2.39 -0.02 1.67 16 38 H 0.08 1.94 6.95 -2.38 -0.02 1.92 16 39 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.08 1.92 6.49 -2.38 -0.02 1.91 16 42 H 0.06 1.43 6.57 -2.39 -0.02 1.41 16 43 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.07 1.50 7.34 -2.39 -0.02 1.49 16 45 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 46 H 0.04 1.38 6.92 -2.39 -0.02 1.36 16 47 H 0.07 2.50 7.35 -2.38 -0.02 2.48 16 48 H 0.03 1.06 6.80 -2.39 -0.02 1.04 16 49 H -0.01 -0.53 7.14 -2.38 -0.02 -0.55 16 50 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 51 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 Total: -1.00 -70.45 393.51 2.33 -68.13 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.91 Total: 14.12 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 5.61 Total: -2.41 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -5.99 Total: -89.30 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.23 Total: -35.96 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -70.45 2.33 -68.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039474.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.491 kcal (2) G-P(sol) polarization free energy of solvation -70.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds