Wall clock time and date at job start Tue Mar 31 2020 21:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20762 * 119.99894 * 2 1 4 4 C 1.50700 * 119.99823 * 180.02562 * 2 1 3 5 5 H 1.09004 * 109.47004 * 44.99832 * 4 2 1 6 6 C 1.52998 * 109.47339 * 284.99751 * 4 2 1 7 7 N 1.46503 * 109.46838 * 164.99743 * 4 2 1 8 8 C 1.46200 * 118.77244 * 239.73191 * 7 4 2 9 9 C 1.52611 * 109.84381 * 162.26178 * 8 7 4 10 10 C 1.54122 * 110.31738 * 286.55225 * 9 8 7 11 11 C 1.55042 * 102.80664 * 219.00067 * 10 9 8 12 12 N 1.48583 * 103.28719 * 37.01551 * 11 10 9 13 13 C 1.46901 * 110.99880 * 200.55711 * 12 11 10 14 14 C 1.52998 * 109.47403 * 307.41677 * 13 12 11 15 15 C 1.52997 * 109.47252 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47333 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99881 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00070 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00136 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99995 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46836 * 89.99894 * 20 18 16 22 22 H 1.48494 * 109.47219 * 210.00198 * 20 18 16 23 23 H 1.48501 * 109.47182 * 330.00231 * 20 18 16 24 24 C 1.48033 * 105.83513 * 321.08244 * 12 11 10 25 25 O 1.42579 * 109.96285 * 48.10633 * 9 8 7 26 26 C 1.43046 * 113.16695 * 293.07569 * 25 9 8 27 27 C 1.33842 * 118.77498 * 60.00240 * 7 4 2 28 28 O 1.21279 * 118.69525 * 2.37488 * 27 7 4 29 29 H 1.09001 * 109.46953 * 269.99653 * 1 2 3 30 30 H 1.09000 * 109.47318 * 29.99251 * 1 2 3 31 31 H 1.09000 * 109.47161 * 149.99882 * 1 2 3 32 32 H 1.08994 * 109.46857 * 300.00423 * 6 4 2 33 33 H 1.09002 * 109.46643 * 59.99860 * 6 4 2 34 34 H 1.08998 * 109.47214 * 180.02562 * 6 4 2 35 35 H 1.08993 * 109.39638 * 282.58519 * 8 7 4 36 36 H 1.09003 * 109.39592 * 42.30392 * 8 7 4 37 37 H 1.09001 * 110.74453 * 337.33004 * 10 9 8 38 38 H 1.08998 * 110.74791 * 100.67271 * 10 9 8 39 39 H 1.08996 * 110.65715 * 278.56756 * 11 10 9 40 40 H 1.09003 * 110.66079 * 155.46542 * 11 10 9 41 41 H 1.09002 * 109.46958 * 67.41903 * 13 12 11 42 42 H 1.09003 * 109.46636 * 187.41511 * 13 12 11 43 43 H 1.09003 * 109.46854 * 299.99682 * 14 13 12 44 44 H 1.08993 * 109.47104 * 59.99751 * 14 13 12 45 45 H 1.09002 * 109.46854 * 300.00069 * 15 14 13 46 46 H 1.09003 * 109.47367 * 59.99534 * 15 14 13 47 47 H 0.97000 * 119.99963 * 179.97438 * 19 18 16 48 48 H 1.08997 * 109.97760 * 265.86992 * 24 12 11 49 49 H 1.09002 * 110.01588 * 144.60330 * 24 12 11 50 50 H 1.08998 * 109.39912 * 288.52656 * 26 25 9 51 51 H 1.08996 * 109.32628 * 168.74425 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.8128 -1.9828 -0.7276 6 6 2.1923 -1.9341 1.3925 7 7 3.6601 -1.0608 -0.3580 8 6 4.2086 -1.7176 -1.5434 9 6 5.4893 -1.0121 -1.9807 10 6 5.1572 0.3445 -2.6324 11 6 6.1707 0.4206 -3.8032 12 7 6.2458 -0.9840 -4.2817 13 6 7.4807 -1.2155 -5.0429 14 6 7.6059 -0.1613 -6.1446 15 6 8.8918 -0.4028 -6.9378 16 6 9.0154 0.6359 -8.0226 17 1 8.2529 1.3925 -8.1353 18 6 10.1020 0.6205 -8.8712 19 7 11.0303 -0.3010 -8.7343 20 14 10.2550 1.9077 -10.2163 21 1 10.9941 3.0847 -9.6933 22 1 10.9922 1.3328 -11.3701 23 1 8.9001 2.3289 -10.6548 24 6 6.2060 -1.8276 -3.0659 25 8 6.3459 -0.8179 -0.8575 26 6 5.8173 0.1032 0.1008 27 6 4.3904 -0.2489 0.4159 28 8 3.8805 0.2217 1.4105 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 2.6399 -1.2564 2.1193 33 1 1.1509 -2.1158 1.6583 34 1 2.7376 -2.8778 1.3921 35 1 4.4267 -2.7600 -1.3114 36 1 3.4791 -1.6733 -2.3521 37 1 4.1335 0.3527 -3.0067 38 1 5.3185 1.1609 -1.9284 39 1 7.1442 0.7583 -3.4477 40 1 5.7995 1.0759 -4.5912 41 1 8.3384 -1.1455 -4.3739 42 1 7.4500 -2.2083 -5.4918 43 1 6.7482 -0.2313 -6.8137 44 1 7.6365 0.8315 -5.6958 45 1 9.7497 -0.3331 -6.2690 46 1 8.8608 -1.3956 -7.3867 47 1 11.7945 -0.3120 -9.3315 48 1 7.2199 -2.0655 -2.7443 49 1 5.6542 -2.7459 -3.2669 50 1 5.8594 1.1133 -0.3064 51 1 6.4118 0.0554 1.0131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274042709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:08 Heat of formation + Delta-G solvation = -98.201730 kcal Electronic energy + Delta-G solvation = -30690.013922 eV Core-core repulsion = 26590.104796 eV Total energy + Delta-G solvation = -4099.909127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71781 -39.98446 -38.66590 -37.12028 -35.97868 -34.11359 -32.79853 -32.09561 -30.32486 -30.02234 -29.76553 -27.50864 -26.66752 -25.19031 -24.74482 -23.20830 -21.98459 -21.20556 -19.98615 -19.75461 -18.65820 -17.92107 -17.23963 -16.74777 -16.36889 -15.97937 -15.79627 -15.59029 -15.27393 -15.07561 -14.83052 -14.47922 -14.42336 -14.10577 -13.87521 -13.64751 -13.40184 -13.18805 -13.06579 -12.97472 -12.66327 -12.61015 -12.38916 -12.22934 -12.05435 -12.00595 -11.65862 -11.54535 -11.29738 -11.16352 -11.10268 -10.81577 -10.62285 -10.51979 -10.39839 -10.08548 -9.69653 -9.55303 -9.34357 -9.06015 -8.99713 -8.34177 -8.29511 -5.99386 -4.01484 1.64435 2.25672 2.40764 3.21936 3.32412 3.38609 3.42141 3.59769 3.94415 4.10047 4.27788 4.32692 4.45811 4.50135 4.53505 4.56423 4.64818 4.84359 4.89472 4.98603 4.99299 5.01597 5.12221 5.19165 5.21244 5.29743 5.36466 5.37487 5.42471 5.51923 5.60529 5.66745 5.72034 5.76848 5.84372 5.94307 6.00072 6.02798 6.26588 6.56250 6.63236 6.73624 6.93670 7.02673 7.15938 7.19022 7.27111 7.68012 7.82506 7.82805 8.00692 8.43724 9.05544 9.62493 11.12006 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.002106 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.362844 B =13293.890108 C =13609.721540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.340 3.660 3 O -0.427 6.427 4 C 0.096 3.904 5 H 0.114 0.886 6 C -0.163 4.163 7 N -0.599 5.599 8 C 0.101 3.899 9 C 0.093 3.907 10 C -0.150 4.150 11 C 0.041 3.959 12 N -0.513 5.513 13 C 0.046 3.954 14 C -0.108 4.108 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.052 3.948 25 O -0.357 6.357 26 C 0.048 3.952 27 C 0.501 3.499 28 O -0.527 6.527 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.014 0.986 46 H 0.016 0.984 47 H 0.260 0.740 48 H 0.067 0.933 49 H 0.092 0.908 50 H 0.094 0.906 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.766 -5.812 20.633 29.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.212 3.788 3 O -0.298 6.298 4 C -0.009 4.009 5 H 0.132 0.868 6 C -0.221 4.221 7 N -0.333 5.333 8 C -0.022 4.022 9 C 0.052 3.948 10 C -0.188 4.188 11 C -0.087 4.087 12 N -0.238 5.238 13 C -0.081 4.081 14 C -0.146 4.146 15 C -0.016 4.016 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.077 4.077 25 O -0.276 6.276 26 C -0.031 4.031 27 C 0.289 3.711 28 O -0.404 6.404 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.032 0.968 46 H 0.035 0.965 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.110 0.890 50 H 0.112 0.888 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.750 -5.277 20.734 29.805 hybrid contribution 0.607 0.796 -0.375 1.069 sum -20.143 -4.482 20.359 28.988 Atomic orbital electron populations 1.22250 0.93786 1.04848 1.04767 1.24875 0.91998 0.90320 0.71594 1.90447 1.71570 1.34535 1.33200 1.21629 0.82343 0.96926 0.99957 0.86782 1.22102 1.03020 1.01627 0.95373 1.47429 1.10498 1.47759 1.27624 1.22213 0.95701 0.97026 0.87271 1.22347 0.89307 0.96160 0.86975 1.23167 1.01143 0.96185 0.98315 1.23201 0.97824 0.91549 0.96113 1.65043 1.37886 1.03735 1.17132 1.22521 0.88192 1.01349 0.96029 1.21704 1.01109 0.96086 0.95726 1.19067 0.91014 0.97131 0.94342 1.21237 1.06556 1.13311 1.14579 0.92724 1.25030 0.95902 0.95873 0.97730 1.69963 1.11005 1.33941 1.38626 0.86600 0.78134 0.81703 0.81605 1.20706 1.21232 1.19875 1.22754 1.00712 0.96500 0.87724 1.88150 1.44624 1.63533 1.31274 1.22853 0.90591 0.95220 0.94481 1.20796 0.89255 0.78002 0.83066 1.90671 1.71603 1.51400 1.26721 0.88613 0.89494 0.89669 0.89545 0.91075 0.91379 0.90320 0.89098 0.89776 0.90322 0.93006 0.89250 0.94758 0.90746 0.92558 0.93371 0.96798 0.96526 0.93030 0.91526 0.88974 0.88839 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.99 10.24 36.01 0.37 -0.62 16 2 C 0.34 3.05 6.14 -29.03 -0.18 2.88 16 3 O -0.43 -5.83 14.61 -17.10 -0.25 -6.08 16 4 C 0.10 0.71 2.98 -69.08 -0.21 0.50 16 5 H 0.11 0.47 7.87 -51.93 -0.41 0.06 16 6 C -0.16 -1.11 9.07 37.16 0.34 -0.77 16 7 N -0.60 -5.65 2.67 -168.34 -0.45 -6.10 16 8 C 0.10 0.82 4.99 -4.40 -0.02 0.80 16 9 C 0.09 0.96 0.98 -89.97 -0.09 0.87 16 10 C -0.15 -1.68 5.85 -25.07 -0.15 -1.83 16 11 C 0.04 0.55 5.11 -1.81 -0.01 0.54 16 12 N -0.51 -7.18 5.40 -230.54 -1.25 -8.43 16 13 C 0.05 0.78 5.03 -3.82 -0.02 0.76 16 14 C -0.11 -2.20 4.81 -26.73 -0.13 -2.33 16 15 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 16 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 17 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 20 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.05 0.59 6.17 -2.94 -0.02 0.57 16 25 O -0.36 -4.10 10.31 -35.23 -0.36 -4.46 16 26 C 0.05 0.50 6.39 35.81 0.23 0.73 16 27 C 0.50 5.92 6.09 -11.59 -0.07 5.85 16 28 O -0.53 -7.65 12.67 -17.54 -0.22 -7.88 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.20 8.12 -51.93 -0.42 -0.22 16 32 H 0.09 0.86 5.92 -51.93 -0.31 0.56 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.09 0.62 7.83 -51.93 -0.41 0.22 16 37 H 0.08 0.91 7.68 -51.93 -0.40 0.51 16 38 H 0.08 0.89 5.66 -51.93 -0.29 0.59 16 39 H 0.05 0.75 7.99 -51.93 -0.41 0.33 16 40 H 0.09 1.24 7.68 -51.93 -0.40 0.84 16 41 H 0.03 0.59 7.82 -51.93 -0.41 0.18 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.05 0.96 6.79 -51.93 -0.35 0.61 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.07 0.82 7.39 -51.93 -0.38 0.44 16 49 H 0.09 0.87 7.65 -51.93 -0.40 0.47 16 50 H 0.09 0.96 6.31 -51.93 -0.33 0.63 16 51 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -34.95 395.33 -10.04 -44.99 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -8.68 Total: -3.33 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.50 Total: -5.14 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -0.96 Total: -40.79 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.84 Total: -18.41 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.95 -10.04 -44.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274042709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.208 kcal (2) G-P(sol) polarization free energy of solvation -34.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds