Wall clock time and date at job start Tue Mar 31 2020 21:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20762 * 119.99894 * 2 1 4 4 C 1.50700 * 119.99823 * 180.02562 * 2 1 3 5 5 H 1.09004 * 109.47004 * 44.99832 * 4 2 1 6 6 C 1.52998 * 109.47339 * 284.99751 * 4 2 1 7 7 N 1.46503 * 109.46838 * 164.99743 * 4 2 1 8 8 C 1.46200 * 118.77244 * 239.73191 * 7 4 2 9 9 C 1.52611 * 109.84381 * 162.26178 * 8 7 4 10 10 C 1.54122 * 110.31738 * 286.55225 * 9 8 7 11 11 C 1.55042 * 102.80664 * 219.00067 * 10 9 8 12 12 N 1.48583 * 103.28719 * 37.01551 * 11 10 9 13 13 C 1.46901 * 110.99880 * 200.55711 * 12 11 10 14 14 C 1.52998 * 109.47403 * 307.41677 * 13 12 11 15 15 C 1.52997 * 109.47252 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47333 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99881 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00070 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00136 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99995 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46836 * 89.99894 * 20 18 16 22 22 H 1.48494 * 109.47219 * 210.00198 * 20 18 16 23 23 H 1.48501 * 109.47182 * 330.00231 * 20 18 16 24 24 C 1.48033 * 105.83513 * 321.08244 * 12 11 10 25 25 O 1.42579 * 109.96285 * 48.10633 * 9 8 7 26 26 C 1.43046 * 113.16695 * 293.07569 * 25 9 8 27 27 C 1.33842 * 118.77498 * 60.00240 * 7 4 2 28 28 O 1.21279 * 118.69525 * 2.37488 * 27 7 4 29 29 H 1.09001 * 109.46953 * 269.99653 * 1 2 3 30 30 H 1.09000 * 109.47318 * 29.99251 * 1 2 3 31 31 H 1.09000 * 109.47161 * 149.99882 * 1 2 3 32 32 H 1.08994 * 109.46857 * 300.00423 * 6 4 2 33 33 H 1.09002 * 109.46643 * 59.99860 * 6 4 2 34 34 H 1.08998 * 109.47214 * 180.02562 * 6 4 2 35 35 H 1.08993 * 109.39638 * 282.58519 * 8 7 4 36 36 H 1.09003 * 109.39592 * 42.30392 * 8 7 4 37 37 H 1.09001 * 110.74453 * 337.33004 * 10 9 8 38 38 H 1.08998 * 110.74791 * 100.67271 * 10 9 8 39 39 H 1.08996 * 110.65715 * 278.56756 * 11 10 9 40 40 H 1.09003 * 110.66079 * 155.46542 * 11 10 9 41 41 H 1.09002 * 109.46958 * 67.41903 * 13 12 11 42 42 H 1.09003 * 109.46636 * 187.41511 * 13 12 11 43 43 H 1.09003 * 109.46854 * 299.99682 * 14 13 12 44 44 H 1.08993 * 109.47104 * 59.99751 * 14 13 12 45 45 H 1.09002 * 109.46854 * 300.00069 * 15 14 13 46 46 H 1.09003 * 109.47367 * 59.99534 * 15 14 13 47 47 H 0.97000 * 119.99963 * 179.97438 * 19 18 16 48 48 H 1.08997 * 109.97760 * 265.86992 * 24 12 11 49 49 H 1.09002 * 110.01588 * 144.60330 * 24 12 11 50 50 H 1.08998 * 109.39912 * 288.52656 * 26 25 9 51 51 H 1.08996 * 109.32628 * 168.74425 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.8128 -1.9828 -0.7276 6 6 2.1923 -1.9341 1.3925 7 7 3.6601 -1.0608 -0.3580 8 6 4.2086 -1.7176 -1.5434 9 6 5.4893 -1.0121 -1.9807 10 6 5.1572 0.3445 -2.6324 11 6 6.1707 0.4206 -3.8032 12 7 6.2458 -0.9840 -4.2817 13 6 7.4807 -1.2155 -5.0429 14 6 7.6059 -0.1613 -6.1446 15 6 8.8918 -0.4028 -6.9378 16 6 9.0154 0.6359 -8.0226 17 1 8.2529 1.3925 -8.1353 18 6 10.1020 0.6205 -8.8712 19 7 11.0303 -0.3010 -8.7343 20 14 10.2550 1.9077 -10.2163 21 1 10.9941 3.0847 -9.6933 22 1 10.9922 1.3328 -11.3701 23 1 8.9001 2.3289 -10.6548 24 6 6.2060 -1.8276 -3.0659 25 8 6.3459 -0.8179 -0.8575 26 6 5.8173 0.1032 0.1008 27 6 4.3904 -0.2489 0.4159 28 8 3.8805 0.2217 1.4105 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 2.6399 -1.2564 2.1193 33 1 1.1509 -2.1158 1.6583 34 1 2.7376 -2.8778 1.3921 35 1 4.4267 -2.7600 -1.3114 36 1 3.4791 -1.6733 -2.3521 37 1 4.1335 0.3527 -3.0067 38 1 5.3185 1.1609 -1.9284 39 1 7.1442 0.7583 -3.4477 40 1 5.7995 1.0759 -4.5912 41 1 8.3384 -1.1455 -4.3739 42 1 7.4500 -2.2083 -5.4918 43 1 6.7482 -0.2313 -6.8137 44 1 7.6365 0.8315 -5.6958 45 1 9.7497 -0.3331 -6.2690 46 1 8.8608 -1.3956 -7.3867 47 1 11.7945 -0.3120 -9.3315 48 1 7.2199 -2.0655 -2.7443 49 1 5.6542 -2.7459 -3.2669 50 1 5.8594 1.1133 -0.3064 51 1 6.4118 0.0554 1.0131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274042709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:07 Heat of formation + Delta-G solvation = -121.809055 kcal Electronic energy + Delta-G solvation = -30691.037613 eV Core-core repulsion = 26590.104796 eV Total energy + Delta-G solvation = -4100.932817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.50951 -40.82031 -39.55121 -38.18559 -36.73190 -35.88805 -34.12085 -33.18821 -31.60800 -30.99308 -30.35652 -28.51463 -28.02241 -26.30779 -25.34708 -24.74734 -23.07450 -22.41947 -21.31480 -20.65269 -19.44628 -18.80158 -18.45367 -17.98047 -17.48734 -17.01702 -16.65700 -16.52537 -16.31149 -16.19025 -15.96626 -15.76086 -15.42473 -14.98082 -14.84502 -14.67821 -14.40045 -14.27601 -14.21881 -13.68330 -13.57769 -13.46259 -13.39039 -13.18759 -13.02251 -12.94525 -12.80654 -12.75234 -12.59560 -12.45328 -12.36383 -12.21433 -12.17186 -11.93108 -11.52097 -11.43244 -11.30521 -11.09309 -10.76966 -10.55144 -10.37020 -9.70128 -9.46772 -8.20123 -6.30849 1.02095 1.39826 1.40968 1.44261 1.52221 1.71078 2.35557 2.41537 2.99811 3.04058 3.13011 3.23515 3.44656 3.46533 3.59735 4.00084 4.04083 4.07374 4.13956 4.16940 4.18539 4.27482 4.29892 4.39150 4.45813 4.50801 4.58864 4.60954 4.66078 4.68692 4.71100 4.74602 4.78488 4.83703 4.90253 4.94265 4.99352 5.09162 5.13322 5.22306 5.26533 5.40326 5.51611 5.66837 5.74460 5.85880 5.93260 5.97453 6.25019 6.26728 6.58588 6.85941 7.02900 7.38203 8.91687 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.002106 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.362844 B =13293.890108 C =13609.721540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.336 3.664 3 O -0.485 6.485 4 C 0.087 3.913 5 H 0.158 0.842 6 C -0.157 4.157 7 N -0.596 5.596 8 C 0.102 3.898 9 C 0.092 3.908 10 C -0.141 4.141 11 C 0.038 3.962 12 N -0.512 5.512 13 C 0.058 3.942 14 C -0.093 4.093 15 C 0.026 3.974 16 C -0.542 4.542 17 H 0.058 0.942 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.274 1.274 22 H -0.281 1.281 23 H -0.263 1.263 24 C 0.052 3.948 25 O -0.369 6.369 26 C 0.047 3.953 27 C 0.494 3.506 28 O -0.562 6.562 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.083 0.917 41 H 0.026 0.974 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.047 0.953 45 H -0.012 1.012 46 H -0.005 1.005 47 H 0.263 0.737 48 H 0.056 0.944 49 H 0.121 0.879 50 H 0.091 0.909 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.194 -6.930 20.330 31.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.212 3.788 3 O -0.359 6.359 4 C -0.016 4.016 5 H 0.176 0.824 6 C -0.215 4.215 7 N -0.329 5.329 8 C -0.020 4.020 9 C 0.052 3.948 10 C -0.179 4.179 11 C -0.090 4.090 12 N -0.236 5.236 13 C -0.069 4.069 14 C -0.130 4.130 15 C -0.012 4.012 16 C -0.580 4.580 17 H 0.076 0.924 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.789 3.211 21 H -0.199 1.199 22 H -0.206 1.206 23 H -0.187 1.187 24 C -0.076 4.076 25 O -0.288 6.288 26 C -0.032 4.032 27 C 0.283 3.717 28 O -0.441 6.441 29 H 0.125 0.875 30 H 0.098 0.902 31 H 0.139 0.861 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.101 0.899 41 H 0.044 0.956 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.006 0.994 46 H 0.014 0.986 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.139 0.861 50 H 0.109 0.891 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -23.213 -6.429 20.425 31.580 hybrid contribution 1.361 1.109 -0.255 1.774 sum -21.851 -5.320 20.170 30.209 Atomic orbital electron populations 1.22284 0.90759 1.06253 1.05837 1.25646 0.93857 0.90038 0.69258 1.90441 1.72938 1.36439 1.36133 1.22009 0.81092 0.97021 1.01478 0.82424 1.22042 1.04648 1.00780 0.94024 1.47492 1.11318 1.46827 1.27303 1.22325 0.94787 0.97494 0.87410 1.22365 0.90288 0.95593 0.86538 1.23091 1.00715 0.96879 0.97237 1.23192 0.97766 0.91242 0.96826 1.65026 1.35616 1.04405 1.18526 1.22245 0.89408 1.00101 0.95192 1.21438 0.98068 0.97344 0.96196 1.18968 0.92774 0.95486 0.93978 1.21680 1.06877 1.13965 1.15449 0.92358 1.25982 0.95479 0.98125 1.00349 1.70092 1.11629 1.35778 1.39797 0.85461 0.78583 0.78789 0.78308 1.19913 1.20627 1.18739 1.22857 1.00892 0.97088 0.86770 1.88134 1.45323 1.63714 1.31591 1.22877 0.90656 0.94918 0.94705 1.20921 0.89589 0.78226 0.82991 1.90660 1.72300 1.52891 1.28266 0.87505 0.90232 0.86129 0.93228 0.88223 0.90579 0.87997 0.86868 0.88933 0.90796 0.94603 0.89906 0.95615 0.90375 0.92581 0.93395 0.99360 0.98645 0.92775 0.92543 0.86070 0.89115 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 10.24 71.24 0.73 -0.68 16 2 C 0.34 5.47 6.14 29.10 0.18 5.65 16 3 O -0.49 -13.31 14.61 20.63 0.30 -13.01 16 4 C 0.09 1.03 2.98 44.24 0.13 1.16 16 5 H 0.16 0.46 7.87 -2.38 -0.02 0.44 16 6 C -0.16 -1.76 9.07 71.98 0.65 -1.10 16 7 N -0.60 -10.01 2.67 -805.41 -2.15 -12.16 16 8 C 0.10 1.31 4.99 86.31 0.43 1.74 16 9 C 0.09 1.75 0.98 -10.37 -0.01 1.74 16 10 C -0.14 -3.03 5.85 31.67 0.19 -2.84 16 11 C 0.04 1.00 5.11 86.68 0.44 1.44 16 12 N -0.51 -13.70 5.40 -883.29 -4.77 -18.47 16 13 C 0.06 1.95 5.03 86.30 0.43 2.39 16 14 C -0.09 -3.80 4.81 30.59 0.15 -3.66 16 15 C 0.03 1.36 4.97 29.85 0.15 1.50 16 16 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 17 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 18 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 19 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 20 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 24 C 0.05 1.07 6.17 86.26 0.53 1.61 16 25 O -0.37 -8.18 10.31 -148.98 -1.54 -9.71 16 26 C 0.05 1.01 6.39 71.11 0.45 1.46 16 27 C 0.49 11.55 6.09 87.68 0.53 12.08 16 28 O -0.56 -16.75 12.67 19.06 0.24 -16.50 16 29 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.12 0.01 8.12 -2.39 -0.02 -0.01 16 32 H 0.05 0.97 5.92 -2.39 -0.01 0.95 16 33 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.10 0.92 8.09 -2.39 -0.02 0.91 16 36 H 0.11 1.02 7.83 -2.39 -0.02 1.00 16 37 H 0.09 1.84 7.68 -2.39 -0.02 1.82 16 38 H 0.07 1.68 5.66 -2.39 -0.01 1.66 16 39 H 0.04 1.06 7.99 -2.39 -0.02 1.04 16 40 H 0.08 2.29 7.68 -2.39 -0.02 2.27 16 41 H 0.03 0.90 7.82 -2.39 -0.02 0.88 16 42 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.05 1.95 6.79 -2.39 -0.02 1.93 16 45 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 46 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 47 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 48 H 0.06 1.32 7.39 -2.39 -0.02 1.31 16 49 H 0.12 1.83 7.65 -2.39 -0.02 1.82 16 50 H 0.09 1.95 6.31 -2.39 -0.02 1.93 16 51 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -79.20 395.33 0.99 -78.21 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.91 Total: 9.90 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 5.69 Total: -8.06 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -6.64 Total: -87.47 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.99 Total: -39.23 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -79.20 0.99 -78.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274042709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.601 kcal (2) G-P(sol) polarization free energy of solvation -79.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds