Wall clock time and date at job start Tue Mar 31 2020 21:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20760 * 120.00242 * 2 1 4 4 C 1.50703 * 119.99882 * 180.02562 * 2 1 3 5 5 H 1.09006 * 109.46988 * 319.99457 * 4 2 1 6 6 C 1.52997 * 109.47387 * 79.99359 * 4 2 1 7 7 N 1.46502 * 109.46937 * 200.00014 * 4 2 1 8 8 C 1.46248 * 118.79987 * 120.00109 * 7 4 2 9 9 C 1.52170 * 109.96672 * 162.76382 * 8 7 4 10 10 C 1.53882 * 110.67974 * 170.21510 * 9 8 7 11 11 C 1.54149 * 104.97037 * 139.78167 * 10 9 8 12 12 N 1.47963 * 107.03364 * 1.63623 * 11 10 9 13 13 C 1.46906 * 110.99697 * 214.29881 * 12 11 10 14 14 C 1.53000 * 109.46786 * 175.71181 * 13 12 11 15 15 C 1.53003 * 109.47174 * 174.85656 * 14 13 12 16 16 C 1.50700 * 109.47338 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99712 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00022 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00060 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99976 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47307 * 60.00156 * 20 18 16 22 22 H 1.48500 * 109.47255 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47321 * 300.00326 * 20 18 16 24 24 C 1.48655 * 105.91575 * 334.86544 * 12 11 10 25 25 O 1.42274 * 110.66221 * 47.13421 * 9 8 7 26 26 C 1.43064 * 113.26220 * 293.89431 * 25 9 8 27 27 C 1.33835 * 118.79628 * 299.99331 * 7 4 2 28 28 O 1.21284 * 118.64955 * 2.59232 * 27 7 4 29 29 H 1.09002 * 109.46850 * 239.99617 * 1 2 3 30 30 H 1.09000 * 109.46725 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.47432 * 119.99755 * 1 2 3 32 32 H 1.09008 * 109.47164 * 179.97438 * 6 4 2 33 33 H 1.08990 * 109.47538 * 300.00213 * 6 4 2 34 34 H 1.09004 * 109.46759 * 60.00587 * 6 4 2 35 35 H 1.08995 * 109.39069 * 42.60559 * 8 7 4 36 36 H 1.09006 * 109.38311 * 282.91226 * 8 7 4 37 37 H 1.08997 * 110.34500 * 20.90725 * 10 9 8 38 38 H 1.09002 * 110.42828 * 258.69495 * 10 9 8 39 39 H 1.09008 * 109.92204 * 242.28977 * 11 10 9 40 40 H 1.09001 * 109.92617 * 120.98529 * 11 10 9 41 41 H 1.08997 * 109.47562 * 55.71236 * 13 12 11 42 42 H 1.08997 * 109.47002 * 295.70486 * 13 12 11 43 43 H 1.08998 * 109.47389 * 54.85709 * 14 13 12 44 44 H 1.08999 * 109.47502 * 294.85970 * 14 13 12 45 45 H 1.08998 * 109.46920 * 59.99766 * 15 14 13 46 46 H 1.09002 * 109.47370 * 300.00036 * 15 14 13 47 47 H 0.97002 * 120.00225 * 179.97438 * 19 18 16 48 48 H 1.08999 * 110.67762 * 156.87710 * 24 12 11 49 49 H 1.08997 * 110.68067 * 280.02903 * 24 12 11 50 50 H 1.08995 * 109.40107 * 168.43754 * 26 25 9 51 51 H 1.08998 * 109.39426 * 288.25665 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7604 -2.0137 0.6598 6 6 2.2985 -1.8715 -1.4213 7 7 3.6287 -1.0793 0.4719 8 6 4.0862 -1.7845 1.6687 9 6 5.6059 -1.7534 1.7411 10 6 6.0957 -2.2718 3.1046 11 6 7.3347 -3.1305 2.7825 12 7 7.5446 -3.0569 1.3196 13 6 8.0690 -4.3264 0.7985 14 6 8.1718 -4.2482 -0.7260 15 6 8.8364 -5.5194 -1.2582 16 6 8.9382 -5.4422 -2.7598 17 1 8.5658 -4.5735 -3.2823 18 6 9.5059 -6.4810 -3.4666 19 7 9.9581 -7.5395 -2.8304 20 14 9.6315 -6.3856 -5.3279 21 1 10.4469 -5.2044 -5.7091 22 1 10.2767 -7.6193 -5.8444 23 1 8.2714 -6.2567 -5.9099 24 6 6.2144 -2.7486 0.7319 25 8 6.0933 -0.4389 1.4986 26 6 5.8483 0.0175 0.1651 27 6 4.4143 -0.2353 -0.2075 28 8 3.9501 0.3494 -1.1633 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8899 32 1 2.8439 -2.8154 -1.4218 33 1 1.2806 -2.0396 -1.7729 34 1 2.7987 -1.1630 -2.0816 35 1 3.7468 -2.8195 1.6308 36 1 3.6719 -1.3016 2.5538 37 1 5.3253 -2.8808 3.5775 38 1 6.3700 -1.4389 3.7521 39 1 7.1581 -4.1640 3.0808 40 1 8.2066 -2.7346 3.3032 41 1 7.3970 -5.1384 1.0762 42 1 9.0568 -4.5119 1.2202 43 1 8.7699 -3.3811 -1.0059 44 1 7.1734 -4.1540 -1.1532 45 1 8.2382 -6.3866 -0.9783 46 1 9.8348 -5.6136 -0.8311 47 1 10.3572 -8.2705 -3.3277 48 1 6.3249 -2.2840 -0.2479 49 1 5.6050 -3.6498 0.6651 50 1 6.0550 1.0860 0.1044 51 1 6.5000 -0.5171 -0.5259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274042715.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:12 Heat of formation + Delta-G solvation = -123.225399 kcal Electronic energy + Delta-G solvation = -31227.496732 eV Core-core repulsion = 27126.502497 eV Total energy + Delta-G solvation = -4100.994234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.46942 -40.80034 -39.48149 -38.03434 -36.72543 -35.95589 -34.22459 -33.22315 -31.92275 -30.51336 -29.90507 -28.99417 -27.94095 -26.63196 -25.36040 -24.56723 -22.98764 -22.00417 -21.56144 -20.65770 -19.43971 -18.81884 -18.51289 -17.97800 -17.35310 -17.18284 -16.67842 -16.46698 -16.35342 -15.99380 -15.85676 -15.59641 -15.31764 -15.16298 -14.93069 -14.73546 -14.38334 -14.15858 -13.91187 -13.86288 -13.62092 -13.44090 -13.30583 -13.17181 -13.06366 -12.95923 -12.83678 -12.72991 -12.71002 -12.52157 -12.40310 -12.25504 -12.05201 -11.87279 -11.52996 -11.38797 -11.22958 -11.10337 -10.79888 -10.56958 -10.33288 -9.66225 -9.33834 -8.22407 -6.33203 1.03041 1.37695 1.40341 1.48408 1.48768 1.71184 2.38651 2.53519 2.88438 3.05727 3.10605 3.36097 3.43022 3.52867 3.73728 3.96058 4.05479 4.13148 4.15469 4.17337 4.22529 4.26734 4.32471 4.38135 4.42659 4.49640 4.55404 4.63285 4.66357 4.68955 4.69551 4.70879 4.78424 4.85540 4.92323 5.00356 5.06983 5.10089 5.14431 5.22802 5.25961 5.40224 5.48448 5.70460 5.81019 5.83230 5.97377 6.07207 6.25323 6.27656 6.61806 6.82878 7.06011 7.35910 8.89158 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011684 B = 0.003019 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.824481 B = 9271.229057 C =10762.121610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.333 3.667 3 O -0.480 6.480 4 C 0.090 3.910 5 H 0.162 0.838 6 C -0.161 4.161 7 N -0.600 5.600 8 C 0.097 3.903 9 C 0.095 3.905 10 C -0.101 4.101 11 C 0.032 3.968 12 N -0.527 5.527 13 C 0.061 3.939 14 C -0.090 4.090 15 C 0.029 3.971 16 C -0.546 4.546 17 H 0.054 0.946 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.961 3.039 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.267 1.267 24 C 0.014 3.986 25 O -0.355 6.355 26 C 0.052 3.948 27 C 0.488 3.512 28 O -0.557 6.557 29 H 0.125 0.875 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.042 0.958 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.068 0.932 43 H 0.044 0.956 44 H 0.044 0.956 45 H -0.005 1.005 46 H -0.008 1.008 47 H 0.265 0.735 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.130 0.870 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.033 10.195 15.278 27.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.209 3.791 3 O -0.354 6.354 4 C -0.014 4.014 5 H 0.179 0.821 6 C -0.219 4.219 7 N -0.334 5.334 8 C -0.025 4.025 9 C 0.055 3.945 10 C -0.139 4.139 11 C -0.095 4.095 12 N -0.251 5.251 13 C -0.067 4.067 14 C -0.128 4.128 15 C -0.009 4.009 16 C -0.583 4.583 17 H 0.072 0.928 18 C -0.195 4.195 19 N -0.571 5.571 20 Si 0.785 3.215 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.192 1.192 24 C -0.114 4.114 25 O -0.273 6.273 26 C -0.027 4.027 27 C 0.277 3.723 28 O -0.436 6.436 29 H 0.143 0.857 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.061 0.939 35 H 0.137 0.863 36 H 0.116 0.884 37 H 0.139 0.861 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.013 0.987 46 H 0.010 0.990 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.148 0.852 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.356 11.391 14.792 27.622 hybrid contribution 0.101 -0.914 -1.391 1.667 sum -20.255 10.477 13.402 26.451 Atomic orbital electron populations 1.22320 0.90569 1.05257 1.06879 1.25618 0.93820 0.89925 0.69754 1.90471 1.72975 1.36393 1.35545 1.21955 0.82294 0.97607 0.99527 0.82105 1.22050 1.04617 1.00959 0.94230 1.47537 1.12919 1.44358 1.28595 1.22297 0.93139 0.99711 0.87372 1.22278 0.92051 0.82761 0.97452 1.22364 0.97781 1.00236 0.93499 1.23015 0.99032 0.99722 0.87750 1.64774 1.23292 1.31535 1.05510 1.22197 0.99856 0.89479 0.95122 1.21384 0.99358 0.98089 0.93939 1.18937 0.94346 0.92965 0.94633 1.21637 1.39416 1.03498 0.93798 0.92791 1.25919 0.94904 0.94968 1.03701 1.70071 1.41265 1.08066 1.37683 0.85569 0.78784 0.77690 0.79441 1.19480 1.20473 1.19200 1.23734 0.90593 0.98616 0.98489 1.88039 1.80561 1.30598 1.28111 1.22742 0.90902 1.03090 0.85966 1.21043 0.89551 0.78641 0.83106 1.90693 1.74358 1.48659 1.29872 0.85707 0.91030 0.86935 0.91059 0.88043 0.93870 0.86273 0.88396 0.86120 0.88570 0.92247 0.89993 0.94433 0.91361 0.93752 0.93692 0.98704 0.98964 0.92663 0.91847 0.91715 0.85202 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 10.26 71.24 0.73 -0.97 16 2 C 0.33 6.28 6.20 29.10 0.18 6.46 16 3 O -0.48 -14.69 14.22 21.68 0.31 -14.38 16 4 C 0.09 1.35 2.99 44.24 0.13 1.49 16 5 H 0.16 0.80 7.87 -2.38 -0.02 0.78 16 6 C -0.16 -2.75 9.08 71.98 0.65 -2.09 16 7 N -0.60 -12.06 2.72 -806.13 -2.20 -14.25 16 8 C 0.10 1.31 5.14 86.15 0.44 1.75 16 9 C 0.10 1.80 0.92 -10.35 -0.01 1.79 16 10 C -0.10 -1.41 6.26 31.28 0.20 -1.22 16 11 C 0.03 0.64 6.71 86.49 0.58 1.22 16 12 N -0.53 -14.66 5.36 -883.61 -4.73 -19.39 16 13 C 0.06 2.05 4.84 86.30 0.42 2.47 16 14 C -0.09 -3.77 4.84 30.60 0.15 -3.62 16 15 C 0.03 1.53 4.97 29.85 0.15 1.68 16 16 C -0.55 -31.72 9.11 25.60 0.23 -31.48 16 17 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 18 C 0.00 0.18 5.46 84.65 0.46 0.64 16 19 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 20 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 C 0.01 0.34 4.09 86.39 0.35 0.69 16 25 O -0.35 -8.69 10.39 -148.98 -1.55 -10.23 16 26 C 0.05 1.38 6.36 71.11 0.45 1.83 16 27 C 0.49 13.76 6.21 87.68 0.54 14.30 16 28 O -0.56 -19.79 12.37 20.09 0.25 -19.54 16 29 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 31 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.04 1.12 6.10 -2.38 -0.01 1.11 16 35 H 0.12 0.91 7.84 -2.39 -0.02 0.89 16 36 H 0.10 0.97 8.13 -2.38 -0.02 0.95 16 37 H 0.12 0.85 7.83 -2.39 -0.02 0.83 16 38 H 0.10 1.30 8.07 -2.39 -0.02 1.28 16 39 H 0.06 1.06 7.67 -2.38 -0.02 1.04 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.04 1.19 7.97 -2.39 -0.02 1.17 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.85 7.19 -2.39 -0.02 1.83 16 45 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 46 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 47 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 48 H 0.06 1.88 5.52 -2.39 -0.01 1.87 16 49 H 0.06 1.48 7.70 -2.39 -0.02 1.47 16 50 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 51 H 0.09 2.42 6.57 -2.39 -0.02 2.40 16 Total: -1.00 -83.02 396.68 0.96 -82.05 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.90 Total: 10.38 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 5.67 Total: -5.06 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -6.64 Total: -90.17 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -0.99 Total: -44.15 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -83.02 0.96 -82.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274042715.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.171 kcal (2) G-P(sol) polarization free energy of solvation -83.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds