Wall clock time and date at job start Tue Mar 31 2020 21:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46827 * 2 1 4 4 C 1.52998 * 109.47370 * 240.00469 * 2 1 3 5 5 O 1.42893 * 109.47477 * 64.99499 * 4 2 1 6 6 C 1.53006 * 109.47333 * 119.99906 * 2 1 3 7 7 N 1.46902 * 109.47109 * 295.00332 * 6 2 1 8 8 C 1.46852 * 111.00064 * 293.95521 * 7 6 2 9 9 C 1.53047 * 109.57120 * 173.69321 * 8 7 6 10 10 C 1.53212 * 109.20831 * 59.71012 * 9 8 7 11 11 C 1.52521 * 109.25820 * 303.26442 * 10 9 8 12 12 C 1.53771 * 110.24873 * 178.39801 * 11 10 9 13 13 C 1.51450 * 103.50929 * 118.61118 * 12 11 10 14 14 O 1.21226 * 125.41377 * 180.08810 * 13 12 11 15 15 N 1.34320 * 108.97115 * 0.14781 * 13 12 11 16 16 C 1.46502 * 122.72647 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47098 * 269.88693 * 16 15 13 18 18 C 1.50695 * 109.47494 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99696 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00249 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99934 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99942 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47553 * 89.99474 * 22 20 18 24 24 H 1.48504 * 109.46660 * 209.99437 * 22 20 18 25 25 H 1.48500 * 109.46782 * 329.98933 * 22 20 18 26 26 C 1.34045 * 114.48639 * 359.84057 * 15 13 12 27 27 O 1.21230 * 125.49754 * 180.12054 * 26 15 13 28 28 C 1.46936 * 110.99926 * 169.81221 * 7 6 2 29 29 H 1.09004 * 109.47480 * 299.99539 * 1 2 3 30 30 H 1.08997 * 109.47136 * 60.00491 * 1 2 3 31 31 H 1.09001 * 109.46827 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47177 * 185.00189 * 4 2 1 33 33 H 1.09002 * 109.46757 * 304.99441 * 4 2 1 34 34 H 0.96700 * 114.00098 * 179.97438 * 5 4 2 35 35 H 1.08993 * 109.47004 * 175.00361 * 6 2 1 36 36 H 1.08999 * 109.46585 * 55.00477 * 6 2 1 37 37 H 1.08998 * 109.45999 * 53.65704 * 8 7 6 38 38 H 1.09001 * 109.45614 * 293.72091 * 8 7 6 39 39 H 1.09007 * 109.51159 * 299.79052 * 9 8 7 40 40 H 1.08998 * 109.51797 * 179.63392 * 9 8 7 41 41 H 1.08997 * 109.50346 * 183.33108 * 10 9 8 42 42 H 1.08994 * 109.54093 * 63.21993 * 10 9 8 43 43 H 1.09002 * 110.64384 * 237.16525 * 12 11 10 44 44 H 1.08996 * 110.63673 * 0.06470 * 12 11 10 45 45 H 1.09000 * 109.47592 * 29.89344 * 16 15 13 46 46 H 1.09001 * 109.46731 * 149.89490 * 16 15 13 47 47 H 1.09000 * 109.47430 * 300.00749 * 17 16 15 48 48 H 1.09005 * 109.46846 * 60.00028 * 17 16 15 49 49 H 0.96991 * 120.00095 * 180.02562 * 21 20 18 50 50 H 1.08996 * 109.44439 * 64.74664 * 28 7 6 51 51 H 1.09009 * 109.43915 * 304.85465 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.6620 0.0168 -2.4130 6 6 2.0400 -0.7212 1.2493 7 7 1.6514 0.0374 2.4457 8 6 2.3337 1.3370 2.4895 9 6 1.7904 2.1622 3.6583 10 6 2.0343 1.4039 4.9671 11 6 1.3860 0.0262 4.8786 12 6 1.6513 -0.7706 6.1667 13 6 0.2638 -1.0212 6.7198 14 8 0.0131 -1.6233 7.7416 15 7 -0.6414 -0.4698 5.8946 16 6 -2.0835 -0.5347 6.1440 17 6 -2.6592 -1.7895 5.4843 18 6 -4.1427 -1.8560 5.7402 19 1 -4.6266 -1.0811 6.3162 20 6 -4.8822 -2.9067 5.2400 21 7 -4.2929 -3.8507 4.5390 22 14 -6.7213 -2.9887 5.5566 23 1 -7.4433 -2.2860 4.4659 24 1 -7.1530 -4.4090 5.6012 25 1 -7.0296 -2.3367 6.8548 26 6 -0.1164 0.1468 4.8264 27 8 -0.7475 0.7107 3.9585 28 6 1.9084 -0.7377 3.6672 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1264 -0.7994 -1.2056 33 1 1.6055 -1.7197 -1.2952 34 1 1.9533 -0.3828 -3.2440 35 1 3.1263 -0.7994 1.2056 36 1 1.6055 -1.7198 1.2951 37 1 2.1583 1.8709 1.5556 38 1 3.4043 1.1807 2.6222 39 1 0.7206 2.3228 3.5244 40 1 2.3020 3.1240 3.6939 41 1 1.5967 1.9595 5.7965 42 1 3.1063 1.2920 5.1292 43 1 2.1505 -1.7126 5.9399 44 1 2.2436 -0.1821 6.8673 45 1 -2.2653 -0.5729 7.2180 46 1 -2.5647 0.3491 5.7252 47 1 -2.4774 -1.7513 4.4102 48 1 -2.1779 -2.6734 5.9030 49 1 -4.8131 -4.5896 4.1868 50 1 2.9809 -0.8995 3.7753 51 1 1.4017 -1.7005 3.5993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274069280.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:36 Heat of formation + Delta-G solvation = -123.612610 kcal Electronic energy + Delta-G solvation = -31418.967705 eV Core-core repulsion = 27317.956680 eV Total energy + Delta-G solvation = -4101.011025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.91886 -39.21212 -38.02218 -37.30134 -35.54338 -35.16057 -33.59529 -32.51040 -31.97562 -29.92394 -27.64640 -26.72510 -25.99837 -25.20973 -23.99828 -23.12286 -21.88754 -21.70446 -20.28128 -19.84649 -18.37467 -17.59777 -16.91296 -16.38781 -16.10282 -15.95626 -15.84733 -15.55630 -14.89114 -14.66281 -14.50937 -14.46083 -14.17817 -13.91409 -13.68110 -13.58887 -13.30185 -12.90915 -12.88853 -12.65685 -12.53041 -12.38865 -12.24182 -12.16115 -11.77026 -11.48711 -11.25951 -11.11832 -11.03313 -10.93902 -10.83968 -10.74943 -10.53607 -10.47390 -10.16472 -10.11054 -10.05226 -9.87647 -9.41037 -9.18784 -8.79470 -8.36230 -8.31682 -6.01279 -4.04582 1.93511 3.01485 3.16471 3.34138 3.39712 3.43514 3.51091 4.09316 4.24585 4.34625 4.41966 4.47125 4.49166 4.73322 4.86448 4.92074 4.93912 5.00041 5.09359 5.19290 5.21693 5.30772 5.35480 5.38525 5.39812 5.44755 5.48185 5.53018 5.61323 5.73411 5.76626 5.78539 5.88096 5.98843 5.99936 6.07800 6.24508 6.30804 6.32450 6.36424 6.67052 6.72105 6.93986 7.00378 7.32114 7.41865 7.61225 7.75380 7.79418 7.95295 8.25377 8.37979 9.00409 9.59278 11.10440 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009443 B = 0.003754 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.480195 B = 7456.615058 C = 9579.797873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.076 0.924 4 C 0.080 3.920 5 O -0.571 6.571 6 C 0.064 3.936 7 N -0.522 5.522 8 C 0.057 3.943 9 C -0.126 4.126 10 C -0.098 4.098 11 C -0.094 4.094 12 C -0.153 4.153 13 C 0.525 3.475 14 O -0.484 6.484 15 N -0.570 5.570 16 C 0.102 3.898 17 C 0.016 3.984 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.896 3.104 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.539 3.461 27 O -0.449 6.449 28 C 0.079 3.921 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.377 0.623 35 H 0.032 0.968 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.029 0.971 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.022 0.978 48 H 0.020 0.980 49 H 0.261 0.739 50 H 0.048 0.952 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.883 9.050 -6.958 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.095 0.905 4 C 0.002 3.998 5 O -0.376 6.376 6 C -0.064 4.064 7 N -0.246 5.246 8 C -0.070 4.070 9 C -0.163 4.163 10 C -0.136 4.136 11 C -0.098 4.098 12 C -0.193 4.193 13 C 0.313 3.687 14 O -0.357 6.357 15 N -0.313 5.313 16 C -0.017 4.017 17 C -0.022 4.022 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.531 5.531 22 Si 0.724 3.276 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.198 1.198 26 C 0.325 3.675 27 O -0.317 6.317 28 C -0.049 4.049 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.223 0.777 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.047 0.953 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.041 0.959 48 H 0.038 0.962 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 19.537 9.358 -6.548 22.631 hybrid contribution 0.100 -0.907 -0.218 0.938 sum 19.637 8.451 -6.766 22.423 Atomic orbital electron populations 1.21663 0.93159 1.02018 1.02522 1.21103 0.98259 0.99838 0.91297 0.90530 1.22202 0.97347 0.94458 0.85806 1.86491 1.81588 1.53208 1.16265 1.22019 0.97309 0.97636 0.89398 1.61722 1.58530 1.03411 1.00923 1.22116 0.94800 0.90491 0.99607 1.21723 1.04151 0.97442 0.93025 1.21436 1.00337 0.92696 0.99084 1.21130 0.94669 0.98150 0.95806 1.22584 0.96485 1.03354 0.96872 1.20712 0.87889 0.77137 0.82968 1.90755 1.84256 1.37736 1.22915 1.47162 1.10921 1.49581 1.23602 1.22204 0.74596 1.02934 1.01942 1.19350 0.95893 0.90767 0.96182 1.21015 0.92458 1.08342 1.34166 0.92368 1.24981 0.98724 0.95479 0.94957 1.69969 1.35932 1.11668 1.35524 0.86528 0.85186 0.77208 0.78716 1.20540 1.21176 1.19759 1.20081 0.89501 0.77425 0.80494 1.90717 1.67239 1.39083 1.34678 1.21848 0.98803 0.96427 0.87826 0.90581 0.92999 0.93256 0.94168 0.93492 0.77697 0.94990 0.90323 0.90277 0.95259 0.89070 0.91329 0.91133 0.90671 0.86572 0.86536 0.90302 0.90164 0.95921 0.96189 0.92918 0.93350 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.98 37.16 0.33 -1.50 16 2 C -0.09 -0.92 2.55 -90.62 -0.23 -1.15 16 3 H 0.08 0.84 6.22 -51.93 -0.32 0.52 16 4 C 0.08 0.72 6.43 37.16 0.24 0.96 16 5 O -0.57 -5.54 13.19 -35.23 -0.46 -6.01 16 6 C 0.06 0.65 4.35 -3.82 -0.02 0.64 16 7 N -0.52 -6.00 3.50 -234.96 -0.82 -6.82 16 8 C 0.06 0.56 5.29 -3.83 -0.02 0.54 16 9 C -0.13 -1.25 5.82 -26.60 -0.15 -1.41 16 10 C -0.10 -0.90 4.59 -26.87 -0.12 -1.03 16 11 C -0.09 -1.09 0.69 -155.74 -0.11 -1.20 16 12 C -0.15 -1.66 6.29 -27.11 -0.17 -1.83 16 13 C 0.52 8.83 8.10 -10.82 -0.09 8.74 16 14 O -0.48 -9.84 17.50 5.60 0.10 -9.75 16 15 N -0.57 -10.55 2.57 -115.32 -0.30 -10.84 16 16 C 0.10 2.25 5.51 -4.04 -0.02 2.23 16 17 C 0.02 0.43 5.30 -27.89 -0.15 0.28 16 18 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 22 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.54 9.02 6.52 -11.26 -0.07 8.94 16 27 O -0.45 -8.76 15.07 5.60 0.08 -8.68 16 28 C 0.08 0.86 3.99 -4.09 -0.02 0.85 16 29 H 0.08 1.20 7.75 -51.93 -0.40 0.79 16 30 H 0.05 0.70 7.82 -51.93 -0.41 0.30 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.38 1.89 9.12 45.56 0.42 2.30 16 35 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 36 H 0.08 0.85 8.00 -51.93 -0.42 0.43 16 37 H 0.08 0.78 6.12 -51.93 -0.32 0.46 16 38 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 1.20 6.28 -51.93 -0.33 0.87 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.12 1.06 7.72 -51.93 -0.40 0.66 16 44 H 0.12 0.94 7.71 -51.93 -0.40 0.54 16 45 H 0.08 1.71 7.84 -51.93 -0.41 1.31 16 46 H 0.08 1.74 7.84 -51.93 -0.41 1.33 16 47 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.08 1.03 8.03 -51.92 -0.42 0.61 16 LS Contribution 400.98 15.07 6.04 6.04 Total: -1.00 -35.58 400.98 -8.65 -44.23 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.00 Total: 0.04 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.01 Total: 1.31 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.38 Total: -44.26 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.28 Total: -24.43 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.58 -8.65 -44.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274069280.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.383 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds