Wall clock time and date at job start Tue Mar 31 2020 21:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46827 * 2 1 4 4 C 1.52998 * 109.47370 * 240.00469 * 2 1 3 5 5 O 1.42893 * 109.47477 * 64.99499 * 4 2 1 6 6 C 1.53006 * 109.47333 * 119.99906 * 2 1 3 7 7 N 1.46902 * 109.47109 * 295.00332 * 6 2 1 8 8 C 1.46852 * 111.00064 * 293.95521 * 7 6 2 9 9 C 1.53047 * 109.57120 * 173.69321 * 8 7 6 10 10 C 1.53212 * 109.20831 * 59.71012 * 9 8 7 11 11 C 1.52521 * 109.25820 * 303.26442 * 10 9 8 12 12 C 1.53771 * 110.24873 * 178.39801 * 11 10 9 13 13 C 1.51450 * 103.50929 * 118.61118 * 12 11 10 14 14 O 1.21226 * 125.41377 * 180.08810 * 13 12 11 15 15 N 1.34320 * 108.97115 * 0.14781 * 13 12 11 16 16 C 1.46502 * 122.72647 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47098 * 269.88693 * 16 15 13 18 18 C 1.50695 * 109.47494 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99696 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00249 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99934 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99942 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47553 * 89.99474 * 22 20 18 24 24 H 1.48504 * 109.46660 * 209.99437 * 22 20 18 25 25 H 1.48500 * 109.46782 * 329.98933 * 22 20 18 26 26 C 1.34045 * 114.48639 * 359.84057 * 15 13 12 27 27 O 1.21230 * 125.49754 * 180.12054 * 26 15 13 28 28 C 1.46936 * 110.99926 * 169.81221 * 7 6 2 29 29 H 1.09004 * 109.47480 * 299.99539 * 1 2 3 30 30 H 1.08997 * 109.47136 * 60.00491 * 1 2 3 31 31 H 1.09001 * 109.46827 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47177 * 185.00189 * 4 2 1 33 33 H 1.09002 * 109.46757 * 304.99441 * 4 2 1 34 34 H 0.96700 * 114.00098 * 179.97438 * 5 4 2 35 35 H 1.08993 * 109.47004 * 175.00361 * 6 2 1 36 36 H 1.08999 * 109.46585 * 55.00477 * 6 2 1 37 37 H 1.08998 * 109.45999 * 53.65704 * 8 7 6 38 38 H 1.09001 * 109.45614 * 293.72091 * 8 7 6 39 39 H 1.09007 * 109.51159 * 299.79052 * 9 8 7 40 40 H 1.08998 * 109.51797 * 179.63392 * 9 8 7 41 41 H 1.08997 * 109.50346 * 183.33108 * 10 9 8 42 42 H 1.08994 * 109.54093 * 63.21993 * 10 9 8 43 43 H 1.09002 * 110.64384 * 237.16525 * 12 11 10 44 44 H 1.08996 * 110.63673 * 0.06470 * 12 11 10 45 45 H 1.09000 * 109.47592 * 29.89344 * 16 15 13 46 46 H 1.09001 * 109.46731 * 149.89490 * 16 15 13 47 47 H 1.09000 * 109.47430 * 300.00749 * 17 16 15 48 48 H 1.09005 * 109.46846 * 60.00028 * 17 16 15 49 49 H 0.96991 * 120.00095 * 180.02562 * 21 20 18 50 50 H 1.08996 * 109.44439 * 64.74664 * 28 7 6 51 51 H 1.09009 * 109.43915 * 304.85465 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.6620 0.0168 -2.4130 6 6 2.0400 -0.7212 1.2493 7 7 1.6514 0.0374 2.4457 8 6 2.3337 1.3370 2.4895 9 6 1.7904 2.1622 3.6583 10 6 2.0343 1.4039 4.9671 11 6 1.3860 0.0262 4.8786 12 6 1.6513 -0.7706 6.1667 13 6 0.2638 -1.0212 6.7198 14 8 0.0131 -1.6233 7.7416 15 7 -0.6414 -0.4698 5.8946 16 6 -2.0835 -0.5347 6.1440 17 6 -2.6592 -1.7895 5.4843 18 6 -4.1427 -1.8560 5.7402 19 1 -4.6266 -1.0811 6.3162 20 6 -4.8822 -2.9067 5.2400 21 7 -4.2929 -3.8507 4.5390 22 14 -6.7213 -2.9887 5.5566 23 1 -7.4433 -2.2860 4.4659 24 1 -7.1530 -4.4090 5.6012 25 1 -7.0296 -2.3367 6.8548 26 6 -0.1164 0.1468 4.8264 27 8 -0.7475 0.7107 3.9585 28 6 1.9084 -0.7377 3.6672 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1264 -0.7994 -1.2056 33 1 1.6055 -1.7197 -1.2952 34 1 1.9533 -0.3828 -3.2440 35 1 3.1263 -0.7994 1.2056 36 1 1.6055 -1.7198 1.2951 37 1 2.1583 1.8709 1.5556 38 1 3.4043 1.1807 2.6222 39 1 0.7206 2.3228 3.5244 40 1 2.3020 3.1240 3.6939 41 1 1.5967 1.9595 5.7965 42 1 3.1063 1.2920 5.1292 43 1 2.1505 -1.7126 5.9399 44 1 2.2436 -0.1821 6.8673 45 1 -2.2653 -0.5729 7.2180 46 1 -2.5647 0.3491 5.7252 47 1 -2.4774 -1.7513 4.4102 48 1 -2.1779 -2.6734 5.9030 49 1 -4.8131 -4.5896 4.1868 50 1 2.9809 -0.8995 3.7753 51 1 1.4017 -1.7005 3.5993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274069280.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:35 Heat of formation + Delta-G solvation = -150.309224 kcal Electronic energy + Delta-G solvation = -31420.125357 eV Core-core repulsion = 27317.956680 eV Total energy + Delta-G solvation = -4102.168677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.15383 -40.23829 -39.27150 -38.17760 -36.92680 -36.37943 -35.30743 -33.93121 -32.82777 -31.69382 -28.77726 -27.68510 -27.07360 -26.74439 -25.29050 -23.92021 -23.64210 -22.81654 -21.58263 -20.70836 -19.59185 -18.84967 -18.31077 -17.68561 -17.49954 -17.29216 -16.94689 -16.52159 -16.37351 -15.92835 -15.65594 -15.47091 -15.13048 -15.06718 -14.96670 -14.74982 -14.62322 -14.42226 -14.15759 -13.77730 -13.59044 -13.49806 -13.39163 -13.25929 -13.12089 -12.91766 -12.72803 -12.66618 -12.15667 -12.11168 -12.08077 -11.97511 -11.90399 -11.72221 -11.57049 -11.34642 -11.33433 -11.06702 -10.82749 -10.70422 -10.64193 -10.51682 -9.05231 -8.28938 -6.42370 0.61725 1.35803 1.39005 1.49679 1.65063 1.88202 2.36539 2.71824 3.04828 3.15216 3.24928 3.47160 3.55704 3.64136 3.91093 3.99171 4.08311 4.14602 4.21287 4.23377 4.32910 4.40255 4.46504 4.50356 4.51419 4.57784 4.62184 4.63630 4.67247 4.70121 4.74787 4.75954 4.82450 4.86887 4.96548 5.01097 5.09455 5.12858 5.26148 5.30472 5.34898 5.36444 5.47382 5.53531 5.67594 6.02748 6.05133 6.18998 6.28062 6.48234 6.70328 6.92934 6.94486 7.27452 8.83868 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009443 B = 0.003754 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.480195 B = 7456.615058 C = 9579.797873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.082 4.082 3 H 0.076 0.924 4 C 0.083 3.917 5 O -0.593 6.593 6 C 0.069 3.931 7 N -0.554 5.554 8 C 0.061 3.939 9 C -0.126 4.126 10 C -0.093 4.093 11 C -0.080 4.080 12 C -0.130 4.130 13 C 0.515 3.485 14 O -0.527 6.527 15 N -0.584 5.584 16 C 0.116 3.884 17 C 0.032 3.968 18 C -0.549 4.549 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.973 3.027 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.260 1.260 26 C 0.528 3.472 27 O -0.487 6.487 28 C 0.079 3.921 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.396 0.604 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.120 0.880 43 H 0.145 0.855 44 H 0.161 0.839 45 H 0.078 0.922 46 H 0.077 0.923 47 H -0.014 1.014 48 H -0.013 1.013 49 H 0.266 0.734 50 H 0.093 0.907 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.918 9.746 -6.639 26.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.101 4.101 3 H 0.095 0.905 4 C 0.005 3.995 5 O -0.401 6.401 6 C -0.058 4.058 7 N -0.279 5.279 8 C -0.066 4.066 9 C -0.164 4.164 10 C -0.131 4.131 11 C -0.084 4.084 12 C -0.170 4.170 13 C 0.307 3.693 14 O -0.402 6.402 15 N -0.327 5.327 16 C -0.005 4.005 17 C -0.006 4.006 18 C -0.587 4.587 19 H 0.085 0.915 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.796 3.204 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.184 1.184 26 C 0.317 3.683 27 O -0.358 6.358 28 C -0.049 4.049 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.246 0.754 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.138 0.862 43 H 0.163 0.837 44 H 0.179 0.821 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.004 0.996 48 H 0.006 0.994 49 H 0.075 0.925 50 H 0.110 0.890 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 22.617 10.066 -6.248 25.532 hybrid contribution -0.894 -1.112 -0.392 1.480 sum 21.722 8.955 -6.640 24.416 Atomic orbital electron populations 1.21540 0.96073 1.00383 1.00551 1.21073 0.95573 1.00422 0.93028 0.90530 1.22170 0.98777 0.93795 0.84768 1.86439 1.82155 1.54028 1.17514 1.21954 0.98820 0.96543 0.88509 1.61631 1.60291 1.04483 1.01516 1.22115 0.96103 0.89309 0.99119 1.21703 1.01799 0.98988 0.93895 1.21538 1.02569 0.90429 0.98530 1.21215 0.89944 1.00380 0.96811 1.22726 0.92457 1.05270 0.96520 1.21843 0.89983 0.75517 0.81963 1.90727 1.85291 1.39478 1.24749 1.47392 1.09572 1.50590 1.25124 1.21657 0.77674 1.00070 1.01082 1.19070 0.95705 0.91873 0.93932 1.21478 0.93607 1.08982 1.34657 0.91536 1.26031 1.04442 0.94803 0.94295 1.70109 1.38219 1.12360 1.36324 0.85333 0.78174 0.77664 0.79208 1.19601 1.20311 1.18379 1.21191 0.92149 0.75917 0.79020 1.90700 1.68794 1.40518 1.35743 1.21887 1.00877 0.95017 0.87156 0.93660 0.93683 0.94668 0.91450 0.93566 0.75427 0.91970 0.91684 0.91076 0.92271 0.93315 0.88940 0.91027 0.86178 0.83749 0.82136 0.90329 0.90479 0.99551 0.99440 0.92542 0.88950 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 8.98 71.98 0.65 -3.05 16 2 C -0.08 -1.72 2.55 -10.79 -0.03 -1.75 16 3 H 0.08 1.62 6.22 -2.39 -0.01 1.60 16 4 C 0.08 1.37 6.43 71.98 0.46 1.83 16 5 O -0.59 -10.86 13.19 -148.98 -1.97 -12.83 16 6 C 0.07 1.30 4.35 86.30 0.38 1.68 16 7 N -0.55 -12.05 3.50 -897.28 -3.14 -15.19 16 8 C 0.06 1.02 5.29 86.33 0.46 1.47 16 9 C -0.13 -2.24 5.82 30.68 0.18 -2.06 16 10 C -0.09 -1.35 4.59 30.51 0.14 -1.21 16 11 C -0.08 -1.67 0.69 -52.98 -0.04 -1.71 16 12 C -0.13 -2.38 6.29 30.35 0.19 -2.19 16 13 C 0.52 17.26 8.10 87.97 0.71 17.97 16 14 O -0.53 -21.78 17.50 -2.86 -0.05 -21.83 16 15 N -0.58 -22.48 2.57 -756.25 -1.94 -24.42 16 16 C 0.12 5.44 5.51 86.38 0.48 5.92 16 17 C 0.03 1.85 5.30 29.85 0.16 2.01 16 18 C -0.55 -33.18 9.11 25.60 0.23 -32.94 16 19 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 20 C 0.00 0.16 5.46 84.65 0.46 0.63 16 21 N -0.93 -59.15 13.29 21.45 0.28 -58.87 16 22 Si 0.97 46.08 29.54 68.60 2.03 48.11 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 26 C 0.53 18.18 6.52 87.81 0.57 18.75 16 27 O -0.49 -20.32 15.07 -2.87 -0.04 -20.37 16 28 C 0.08 1.52 3.99 86.11 0.34 1.86 16 29 H 0.04 1.56 7.75 -2.38 -0.02 1.54 16 30 H 0.04 1.31 7.82 -2.39 -0.02 1.29 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.40 3.40 9.12 -74.06 -0.68 2.72 16 35 H 0.06 0.81 8.12 -2.39 -0.02 0.79 16 36 H 0.06 1.38 8.00 -2.39 -0.02 1.36 16 37 H 0.07 1.29 6.12 -2.39 -0.01 1.28 16 38 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.05 1.30 6.28 -2.38 -0.01 1.29 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.14 1.97 7.72 -2.39 -0.02 1.95 16 44 H 0.16 1.65 7.71 -2.39 -0.02 1.63 16 45 H 0.08 3.62 7.84 -2.39 -0.02 3.60 16 46 H 0.08 3.58 7.84 -2.39 -0.02 3.56 16 47 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 48 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 49 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 50 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.06 1.44 8.03 -2.38 -0.02 1.42 16 Total: -1.00 -85.39 400.98 0.76 -84.63 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.24 Total: 13.57 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 5.34 Total: 7.20 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -4.80 Total: -98.48 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -2.06 Total: -55.03 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -85.39 0.76 -84.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274069280.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.676 kcal (2) G-P(sol) polarization free energy of solvation -85.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds