Wall clock time and date at job start Tue Mar 31 2020 21:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47402 * 2 1 4 4 C 1.53001 * 109.47010 * 239.99852 * 2 1 3 5 5 O 1.42901 * 109.47138 * 65.00296 * 4 2 1 6 6 C 1.52994 * 109.47162 * 120.00165 * 2 1 3 7 7 N 1.46907 * 109.46901 * 296.68936 * 6 2 1 8 8 C 1.46856 * 110.97755 * 169.96836 * 7 6 2 9 9 C 1.53047 * 109.59408 * 186.25091 * 8 7 6 10 10 C 1.53227 * 109.21102 * 300.35850 * 9 8 7 11 11 C 1.52533 * 109.19311 * 56.77637 * 10 9 8 12 12 C 1.53747 * 110.29992 * 181.32327 * 11 10 9 13 13 C 1.51454 * 103.35340 * 241.32042 * 12 11 10 14 14 O 1.21223 * 125.40613 * 180.02562 * 13 12 11 15 15 N 1.33953 * 109.17749 * 0.02562 * 13 12 11 16 16 C 1.46500 * 122.78308 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.46898 * 269.99743 * 16 15 13 18 18 C 1.50707 * 109.46774 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00069 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99736 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00526 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99903 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47208 * 60.00257 * 22 20 18 24 24 H 1.48501 * 109.47042 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47067 * 300.00056 * 22 20 18 26 26 C 1.34046 * 114.43540 * 359.97438 * 15 13 12 27 27 O 1.21227 * 125.50376 * 179.97438 * 26 15 13 28 28 C 1.46951 * 110.99901 * 294.10482 * 7 6 2 29 29 H 1.08999 * 109.46970 * 64.97489 * 1 2 3 30 30 H 1.08992 * 109.47141 * 184.97684 * 1 2 3 31 31 H 1.09002 * 109.46530 * 304.98385 * 1 2 3 32 32 H 1.08997 * 109.47599 * 184.99874 * 4 2 1 33 33 H 1.08996 * 109.47031 * 305.00408 * 4 2 1 34 34 H 0.96698 * 114.00582 * 180.02562 * 5 4 2 35 35 H 1.08995 * 109.47690 * 176.69064 * 6 2 1 36 36 H 1.09004 * 109.47219 * 56.68786 * 6 2 1 37 37 H 1.08995 * 109.46307 * 66.20894 * 8 7 6 38 38 H 1.08994 * 109.42259 * 306.26774 * 8 7 6 39 39 H 1.08993 * 109.51892 * 180.43798 * 9 8 7 40 40 H 1.08999 * 109.55870 * 60.29970 * 9 8 7 41 41 H 1.08998 * 109.51495 * 296.86613 * 10 9 8 42 42 H 1.09000 * 109.56894 * 176.72536 * 10 9 8 43 43 H 1.09005 * 110.64435 * 359.78860 * 12 11 10 44 44 H 1.08997 * 110.64142 * 122.85302 * 12 11 10 45 45 H 1.09004 * 109.46918 * 30.00255 * 16 15 13 46 46 H 1.09006 * 109.47170 * 149.99269 * 16 15 13 47 47 H 1.08996 * 109.47575 * 299.99729 * 17 16 15 48 48 H 1.09003 * 109.47322 * 60.00234 * 17 16 15 49 49 H 0.96997 * 120.00389 * 179.97438 * 21 20 18 50 50 H 1.09001 * 109.44979 * 55.12269 * 28 7 6 51 51 H 1.09002 * 109.45189 * 295.16939 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6620 0.0167 -2.4131 6 6 2.0400 -0.7213 1.2492 7 7 1.6167 0.0159 2.4473 8 6 1.8790 -0.7634 3.6641 9 6 1.2875 -0.0385 4.8753 10 6 1.9301 1.3471 4.9969 11 6 1.7134 2.1162 3.6975 12 6 2.3776 3.5003 3.7798 13 6 1.2143 4.4567 3.6187 14 8 1.2938 5.6663 3.6229 15 7 0.0838 3.7535 3.4710 16 6 -1.2258 4.3854 3.2926 17 6 -1.8729 4.6125 4.6603 18 6 -3.2199 5.2631 4.4768 19 1 -3.5786 5.4914 3.4840 20 6 -3.9946 5.5660 5.5763 21 7 -3.5581 5.2875 6.7852 22 14 -5.6645 6.3718 5.3489 23 1 -6.5332 5.4882 4.5303 24 1 -6.2926 6.5923 6.6763 25 1 -5.4949 7.6760 4.6592 26 6 0.2501 2.4237 3.4999 27 8 -0.6331 1.6011 3.3863 28 6 2.2647 1.3333 2.5114 29 1 -0.3633 0.4347 -0.9312 30 1 -0.3633 -1.0237 0.0891 31 1 -0.3632 0.5892 0.8420 32 1 3.1263 -0.7995 -1.2057 33 1 1.6053 -1.7198 -1.2951 34 1 1.9525 -0.3833 -3.2441 35 1 3.1284 -0.7730 1.2201 36 1 1.6290 -1.7304 1.2793 37 1 2.9547 -0.8762 3.7983 38 1 1.4198 -1.7474 3.5702 39 1 1.4895 -0.6141 5.7786 40 1 0.2106 0.0697 4.7458 41 1 2.9988 1.2380 5.1815 42 1 1.4716 1.8910 5.8228 43 1 2.8580 3.6391 4.7484 44 1 3.0967 3.6301 2.9710 45 1 -1.1014 5.3425 2.7860 46 1 -1.8635 3.7367 2.6920 47 1 -1.9974 3.6554 5.1668 48 1 -1.2353 5.2612 5.2608 49 1 -4.1030 5.5009 7.5588 50 1 2.0650 1.8812 1.5905 51 1 3.3403 1.2033 2.6305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274069282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:39 Heat of formation + Delta-G solvation = -123.332414 kcal Electronic energy + Delta-G solvation = -31540.748456 eV Core-core repulsion = 27439.749581 eV Total energy + Delta-G solvation = -4100.998875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.94249 -39.24745 -38.01683 -37.36049 -35.52283 -35.16502 -33.76552 -32.65488 -31.68354 -29.95698 -27.73644 -26.80868 -26.05275 -25.19971 -23.98844 -23.29128 -21.77677 -21.53848 -20.28856 -20.08859 -18.33869 -17.67294 -16.93520 -16.51283 -16.17075 -15.94737 -15.69678 -15.56277 -15.05536 -14.60789 -14.58387 -14.36149 -14.21295 -13.95047 -13.75328 -13.56209 -13.29850 -12.93914 -12.87434 -12.71432 -12.50246 -12.39124 -12.30508 -12.27790 -11.78931 -11.47331 -11.32107 -11.13260 -11.06276 -10.91544 -10.87382 -10.76163 -10.65887 -10.45224 -10.22322 -10.13291 -10.03401 -9.87663 -9.39607 -9.19625 -8.78173 -8.39307 -8.35660 -6.00848 -4.04261 1.95540 3.03933 3.18911 3.36212 3.39528 3.42786 3.45950 4.00056 4.24125 4.34657 4.46426 4.47510 4.49461 4.62046 4.83335 4.89689 4.92533 4.94020 5.03832 5.11023 5.21218 5.25754 5.28879 5.35313 5.35713 5.39772 5.47113 5.55688 5.60629 5.66449 5.70536 5.76937 5.85636 6.01551 6.03957 6.09299 6.13006 6.17937 6.38267 6.39723 6.52899 6.72927 6.85498 6.94282 7.33537 7.34492 7.61093 7.75597 7.81879 7.95582 8.26397 8.38896 9.00578 9.59562 11.10844 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012483 B = 0.003215 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.487801 B = 8705.989282 C = 9359.442442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 H 0.075 0.925 4 C 0.082 3.918 5 O -0.570 6.570 6 C 0.066 3.934 7 N -0.523 5.523 8 C 0.063 3.937 9 C -0.127 4.127 10 C -0.100 4.100 11 C -0.094 4.094 12 C -0.153 4.153 13 C 0.524 3.476 14 O -0.485 6.485 15 N -0.569 5.569 16 C 0.102 3.898 17 C 0.016 3.984 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.893 5.893 22 Si 0.897 3.103 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.539 3.461 27 O -0.449 6.449 28 C 0.076 3.924 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.045 0.955 34 H 0.377 0.623 35 H 0.032 0.968 36 H 0.078 0.922 37 H 0.030 0.970 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.021 0.979 48 H 0.020 0.980 49 H 0.262 0.738 50 H 0.082 0.918 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.517 -15.830 -11.019 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 H 0.094 0.906 4 C 0.003 3.997 5 O -0.375 6.375 6 C -0.062 4.062 7 N -0.247 5.247 8 C -0.064 4.064 9 C -0.164 4.164 10 C -0.138 4.138 11 C -0.098 4.098 12 C -0.193 4.193 13 C 0.312 3.688 14 O -0.358 6.358 15 N -0.311 5.311 16 C -0.017 4.017 17 C -0.022 4.022 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.724 3.276 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C 0.325 3.675 27 O -0.317 6.317 28 C -0.052 4.052 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.224 0.776 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.040 0.960 48 H 0.039 0.961 49 H 0.072 0.928 50 H 0.100 0.900 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 17.194 -15.156 -10.473 25.199 hybrid contribution 0.230 0.000 -0.316 0.391 sum 17.424 -15.156 -10.788 25.489 Atomic orbital electron populations 1.21645 0.93243 1.01886 1.02431 1.21142 0.98255 0.99987 0.91546 0.90627 1.22168 0.97410 0.94248 0.85847 1.86513 1.81555 1.53162 1.16244 1.22020 0.97173 0.97638 0.89406 1.61773 1.58521 1.02525 1.01880 1.22035 0.97844 0.96950 0.89578 1.21729 1.03264 0.94690 0.96735 1.21459 1.01487 0.96319 0.94534 1.21140 0.94211 0.95741 0.98717 1.22586 0.97928 0.92249 1.06528 1.20631 0.85170 0.88381 0.74619 1.90754 1.85590 1.12941 1.46488 1.47065 1.11258 1.09044 1.63723 1.22210 0.79451 0.97317 1.02711 1.19348 0.95470 0.97526 0.89832 1.20985 1.01764 1.40243 0.93027 0.92370 1.24985 0.98363 0.95692 0.95141 1.69958 1.37888 1.47513 0.97815 0.86581 0.83812 0.79934 0.77244 1.20086 1.21245 1.20116 1.20094 0.90614 0.81576 0.75197 1.90711 1.47482 1.50091 1.43431 1.21923 0.95903 0.90562 0.96812 0.92867 0.93383 0.90790 0.94096 0.93642 0.77640 0.94970 0.90364 0.95178 0.90608 0.91150 0.88897 0.90698 0.90650 0.86349 0.86762 0.90265 0.90094 0.96039 0.96143 0.92843 0.89977 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.95 37.16 0.33 -1.29 16 2 C -0.09 -0.88 2.53 -90.62 -0.23 -1.11 16 3 H 0.08 0.82 6.31 -51.93 -0.33 0.49 16 4 C 0.08 0.64 6.43 37.16 0.24 0.88 16 5 O -0.57 -5.12 13.11 -35.23 -0.46 -5.58 16 6 C 0.07 0.56 4.37 -3.82 -0.02 0.54 16 7 N -0.52 -5.46 3.50 -234.95 -0.82 -6.28 16 8 C 0.06 0.59 5.44 -3.82 -0.02 0.57 16 9 C -0.13 -1.37 5.81 -26.59 -0.15 -1.52 16 10 C -0.10 -1.06 4.60 -26.85 -0.12 -1.18 16 11 C -0.09 -1.12 0.69 -155.74 -0.11 -1.23 16 12 C -0.15 -1.72 6.30 -27.12 -0.17 -1.89 16 13 C 0.52 9.00 8.08 -10.98 -0.09 8.91 16 14 O -0.49 -10.03 17.48 5.61 0.10 -9.93 16 15 N -0.57 -10.67 2.56 -115.42 -0.30 -10.97 16 16 C 0.10 2.27 5.50 -4.04 -0.02 2.25 16 17 C 0.02 0.43 5.30 -27.88 -0.15 0.28 16 18 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -27.42 13.29 55.43 0.74 -26.69 16 22 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.54 9.11 6.52 -11.25 -0.07 9.04 16 27 O -0.45 -8.76 15.02 5.60 0.08 -8.68 16 28 C 0.08 0.76 3.82 -4.08 -0.02 0.75 16 29 H 0.05 0.68 7.70 -51.93 -0.40 0.28 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.38 1.59 9.12 45.56 0.42 2.01 16 35 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 36 H 0.08 0.62 7.98 -51.93 -0.41 0.21 16 37 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.67 8.00 -51.93 -0.42 0.25 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.34 6.26 -51.93 -0.32 1.01 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.12 1.12 7.72 -51.93 -0.40 0.72 16 44 H 0.11 0.97 7.72 -51.93 -0.40 0.57 16 45 H 0.08 1.75 7.83 -51.93 -0.41 1.34 16 46 H 0.08 1.78 7.84 -51.93 -0.41 1.37 16 47 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.08 0.87 6.19 -51.93 -0.32 0.55 16 51 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -35.63 400.81 -8.65 -44.29 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -8.00 Total: -0.52 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.01 Total: 1.19 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.38 Total: -43.94 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.28 Total: -24.19 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.63 -8.65 -44.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274069282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.046 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds