Wall clock time and date at job start Tue Mar 31 2020 21:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47402 * 2 1 4 4 C 1.53001 * 109.47010 * 239.99852 * 2 1 3 5 5 O 1.42901 * 109.47138 * 65.00296 * 4 2 1 6 6 C 1.52994 * 109.47162 * 120.00165 * 2 1 3 7 7 N 1.46907 * 109.46901 * 296.68936 * 6 2 1 8 8 C 1.46856 * 110.97755 * 169.96836 * 7 6 2 9 9 C 1.53047 * 109.59408 * 186.25091 * 8 7 6 10 10 C 1.53227 * 109.21102 * 300.35850 * 9 8 7 11 11 C 1.52533 * 109.19311 * 56.77637 * 10 9 8 12 12 C 1.53747 * 110.29992 * 181.32327 * 11 10 9 13 13 C 1.51454 * 103.35340 * 241.32042 * 12 11 10 14 14 O 1.21223 * 125.40613 * 180.02562 * 13 12 11 15 15 N 1.33953 * 109.17749 * 0.02562 * 13 12 11 16 16 C 1.46500 * 122.78308 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.46898 * 269.99743 * 16 15 13 18 18 C 1.50707 * 109.46774 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00069 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99736 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00526 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99903 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47208 * 60.00257 * 22 20 18 24 24 H 1.48501 * 109.47042 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47067 * 300.00056 * 22 20 18 26 26 C 1.34046 * 114.43540 * 359.97438 * 15 13 12 27 27 O 1.21227 * 125.50376 * 179.97438 * 26 15 13 28 28 C 1.46951 * 110.99901 * 294.10482 * 7 6 2 29 29 H 1.08999 * 109.46970 * 64.97489 * 1 2 3 30 30 H 1.08992 * 109.47141 * 184.97684 * 1 2 3 31 31 H 1.09002 * 109.46530 * 304.98385 * 1 2 3 32 32 H 1.08997 * 109.47599 * 184.99874 * 4 2 1 33 33 H 1.08996 * 109.47031 * 305.00408 * 4 2 1 34 34 H 0.96698 * 114.00582 * 180.02562 * 5 4 2 35 35 H 1.08995 * 109.47690 * 176.69064 * 6 2 1 36 36 H 1.09004 * 109.47219 * 56.68786 * 6 2 1 37 37 H 1.08995 * 109.46307 * 66.20894 * 8 7 6 38 38 H 1.08994 * 109.42259 * 306.26774 * 8 7 6 39 39 H 1.08993 * 109.51892 * 180.43798 * 9 8 7 40 40 H 1.08999 * 109.55870 * 60.29970 * 9 8 7 41 41 H 1.08998 * 109.51495 * 296.86613 * 10 9 8 42 42 H 1.09000 * 109.56894 * 176.72536 * 10 9 8 43 43 H 1.09005 * 110.64435 * 359.78860 * 12 11 10 44 44 H 1.08997 * 110.64142 * 122.85302 * 12 11 10 45 45 H 1.09004 * 109.46918 * 30.00255 * 16 15 13 46 46 H 1.09006 * 109.47170 * 149.99269 * 16 15 13 47 47 H 1.08996 * 109.47575 * 299.99729 * 17 16 15 48 48 H 1.09003 * 109.47322 * 60.00234 * 17 16 15 49 49 H 0.96997 * 120.00389 * 179.97438 * 21 20 18 50 50 H 1.09001 * 109.44979 * 55.12269 * 28 7 6 51 51 H 1.09002 * 109.45189 * 295.16939 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6620 0.0167 -2.4131 6 6 2.0400 -0.7213 1.2492 7 7 1.6167 0.0159 2.4473 8 6 1.8790 -0.7634 3.6641 9 6 1.2875 -0.0385 4.8753 10 6 1.9301 1.3471 4.9969 11 6 1.7134 2.1162 3.6975 12 6 2.3776 3.5003 3.7798 13 6 1.2143 4.4567 3.6187 14 8 1.2938 5.6663 3.6229 15 7 0.0838 3.7535 3.4710 16 6 -1.2258 4.3854 3.2926 17 6 -1.8729 4.6125 4.6603 18 6 -3.2199 5.2631 4.4768 19 1 -3.5786 5.4914 3.4840 20 6 -3.9946 5.5660 5.5763 21 7 -3.5581 5.2875 6.7852 22 14 -5.6645 6.3718 5.3489 23 1 -6.5332 5.4882 4.5303 24 1 -6.2926 6.5923 6.6763 25 1 -5.4949 7.6760 4.6592 26 6 0.2501 2.4237 3.4999 27 8 -0.6331 1.6011 3.3863 28 6 2.2647 1.3333 2.5114 29 1 -0.3633 0.4347 -0.9312 30 1 -0.3633 -1.0237 0.0891 31 1 -0.3632 0.5892 0.8420 32 1 3.1263 -0.7995 -1.2057 33 1 1.6053 -1.7198 -1.2951 34 1 1.9525 -0.3833 -3.2441 35 1 3.1284 -0.7730 1.2201 36 1 1.6290 -1.7304 1.2793 37 1 2.9547 -0.8762 3.7983 38 1 1.4198 -1.7474 3.5702 39 1 1.4895 -0.6141 5.7786 40 1 0.2106 0.0697 4.7458 41 1 2.9988 1.2380 5.1815 42 1 1.4716 1.8910 5.8228 43 1 2.8580 3.6391 4.7484 44 1 3.0967 3.6301 2.9710 45 1 -1.1014 5.3425 2.7860 46 1 -1.8635 3.7367 2.6920 47 1 -1.9974 3.6554 5.1668 48 1 -1.2353 5.2612 5.2608 49 1 -4.1030 5.5009 7.5588 50 1 2.0650 1.8812 1.5905 51 1 3.3403 1.2033 2.6305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274069282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:38 Heat of formation + Delta-G solvation = -150.056398 kcal Electronic energy + Delta-G solvation = -31541.907295 eV Core-core repulsion = 27439.749581 eV Total energy + Delta-G solvation = -4102.157714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.19999 -40.25195 -39.24421 -38.16911 -36.93169 -36.33770 -35.35954 -34.13732 -32.57872 -31.70972 -28.86951 -27.65685 -27.08191 -26.71794 -25.29602 -24.06773 -23.64996 -22.56592 -21.55573 -20.84846 -19.58095 -18.85911 -18.28686 -17.74725 -17.54392 -17.39312 -16.76997 -16.56222 -16.31349 -15.84382 -15.79896 -15.45276 -15.19344 -15.01441 -14.94584 -14.76059 -14.65779 -14.35047 -14.14015 -13.74499 -13.63396 -13.54265 -13.41120 -13.18537 -13.16658 -12.89622 -12.76717 -12.65013 -12.15121 -12.12187 -12.07577 -11.96787 -11.86210 -11.74804 -11.55633 -11.43545 -11.24966 -11.11658 -10.81319 -10.70875 -10.64349 -10.52928 -9.04038 -8.29284 -6.42929 0.60813 1.35669 1.40828 1.48164 1.65346 1.86631 2.36449 2.75413 3.04162 3.13416 3.22728 3.40240 3.58016 3.68909 3.89501 4.01724 4.12030 4.12931 4.18105 4.25529 4.31218 4.39372 4.48665 4.49653 4.52982 4.56189 4.62057 4.65357 4.68353 4.71406 4.74909 4.75581 4.78667 4.87072 4.95252 5.04533 5.06138 5.15416 5.25726 5.29241 5.33646 5.37598 5.49098 5.50894 5.66753 6.01796 6.04527 6.19940 6.28738 6.47485 6.69316 6.91715 6.97358 7.26790 8.83343 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012483 B = 0.003215 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.487801 B = 8705.989282 C = 9359.442442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.089 4.089 3 H 0.063 0.937 4 C 0.084 3.916 5 O -0.597 6.597 6 C 0.072 3.928 7 N -0.554 5.554 8 C 0.069 3.931 9 C -0.128 4.128 10 C -0.099 4.099 11 C -0.080 4.080 12 C -0.131 4.131 13 C 0.514 3.486 14 O -0.529 6.529 15 N -0.583 5.583 16 C 0.116 3.884 17 C 0.032 3.968 18 C -0.551 4.551 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.974 3.026 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.264 1.264 26 C 0.528 3.472 27 O -0.484 6.484 28 C 0.079 3.921 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.396 0.604 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.121 0.879 42 H 0.053 0.947 43 H 0.148 0.852 44 H 0.156 0.844 45 H 0.077 0.923 46 H 0.076 0.924 47 H -0.012 1.012 48 H -0.012 1.012 49 H 0.267 0.733 50 H 0.073 0.927 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.367 -17.159 -11.858 29.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.108 4.108 3 H 0.082 0.918 4 C 0.006 3.994 5 O -0.405 6.405 6 C -0.055 4.055 7 N -0.278 5.278 8 C -0.058 4.058 9 C -0.165 4.165 10 C -0.137 4.137 11 C -0.084 4.084 12 C -0.171 4.171 13 C 0.305 3.695 14 O -0.404 6.404 15 N -0.325 5.325 16 C -0.005 4.005 17 C -0.006 4.006 18 C -0.589 4.589 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.797 3.203 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.189 1.189 26 C 0.317 3.683 27 O -0.355 6.355 28 C -0.049 4.049 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.246 0.754 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.139 0.861 42 H 0.072 0.928 43 H 0.165 0.835 44 H 0.174 0.826 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.006 0.994 48 H 0.006 0.994 49 H 0.075 0.925 50 H 0.091 0.909 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.083 -16.520 -11.334 28.367 hybrid contribution -0.721 0.380 -0.048 0.816 sum 19.362 -16.139 -11.382 27.657 Atomic orbital electron populations 1.21526 0.95809 1.01140 0.99948 1.21140 0.95920 1.00052 0.93704 0.91826 1.22171 0.98748 0.93984 0.84503 1.86464 1.82154 1.54252 1.17656 1.21979 0.98644 0.97168 0.87698 1.61672 1.60008 1.03150 1.03003 1.21995 0.99385 0.96310 0.88121 1.21702 1.00504 0.95642 0.98694 1.21551 1.03988 0.95420 0.92721 1.21216 0.89606 0.96837 1.00743 1.22729 0.95657 0.89054 1.09634 1.21763 0.86208 0.88612 0.72894 1.90723 1.86268 1.15040 1.48358 1.47293 1.10451 1.10348 1.64437 1.21659 0.81726 0.97582 0.99506 1.19072 0.95114 0.94727 0.91650 1.21447 1.02834 1.40860 0.93731 0.91588 1.26041 1.02950 0.96022 0.94602 1.70099 1.39735 1.48348 0.98817 0.85376 0.78106 0.79138 0.77692 1.18942 1.20351 1.18876 1.21188 0.93097 0.80280 0.73720 1.90690 1.49370 1.50668 1.44735 1.21953 0.97834 0.90024 0.95096 0.94368 0.92997 0.94311 0.91679 0.92657 0.75429 0.92211 0.89882 0.92091 0.90573 0.89423 0.93638 0.86087 0.92828 0.83455 0.82611 0.90465 0.90557 0.99382 0.99382 0.92467 0.90861 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.95 71.98 0.64 -2.50 16 2 C -0.09 -1.59 2.53 -10.79 -0.03 -1.62 16 3 H 0.06 1.29 6.31 -2.39 -0.02 1.28 16 4 C 0.08 1.10 6.43 71.98 0.46 1.56 16 5 O -0.60 -9.82 13.11 -148.98 -1.95 -11.77 16 6 C 0.07 1.01 4.37 86.30 0.38 1.39 16 7 N -0.55 -10.32 3.50 -897.25 -3.14 -13.46 16 8 C 0.07 1.08 5.44 86.33 0.47 1.55 16 9 C -0.13 -2.60 5.81 30.69 0.18 -2.42 16 10 C -0.10 -1.86 4.60 30.52 0.14 -1.72 16 11 C -0.08 -1.76 0.69 -52.98 -0.04 -1.80 16 12 C -0.13 -2.57 6.30 30.34 0.19 -2.38 16 13 C 0.51 17.85 8.08 88.03 0.71 18.56 16 14 O -0.53 -22.45 17.48 -2.85 -0.05 -22.50 16 15 N -0.58 -23.04 2.56 -756.76 -1.94 -24.98 16 16 C 0.12 5.56 5.50 86.38 0.47 6.03 16 17 C 0.03 1.87 5.30 29.85 0.16 2.03 16 18 C -0.55 -33.48 9.11 25.60 0.23 -33.24 16 19 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 20 C 0.00 0.14 5.46 84.65 0.46 0.60 16 21 N -0.93 -59.20 13.29 21.45 0.28 -58.91 16 22 Si 0.97 46.21 29.54 68.60 2.03 48.24 16 23 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 26 C 0.53 18.59 6.52 87.81 0.57 19.16 16 27 O -0.48 -20.33 15.02 -2.87 -0.04 -20.37 16 28 C 0.08 1.32 3.82 86.11 0.33 1.65 16 29 H 0.04 1.02 7.70 -2.39 -0.02 1.00 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 1.22 7.85 -2.39 -0.02 1.20 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.40 2.64 9.12 -74.06 -0.68 1.96 16 35 H 0.06 0.54 8.12 -2.39 -0.02 0.52 16 36 H 0.08 1.09 7.98 -2.38 -0.02 1.07 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 1.17 8.00 -2.39 -0.02 1.15 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.04 1.37 6.26 -2.39 -0.01 1.36 16 41 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.15 2.16 7.72 -2.38 -0.02 2.14 16 44 H 0.16 1.87 7.72 -2.39 -0.02 1.85 16 45 H 0.08 3.65 7.83 -2.39 -0.02 3.63 16 46 H 0.08 3.64 7.84 -2.38 -0.02 3.62 16 47 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 48 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 49 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 50 H 0.07 1.38 6.19 -2.39 -0.01 1.37 16 51 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -85.41 400.81 0.78 -84.63 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.24 Total: 12.28 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.34 Total: 6.84 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -4.79 Total: -97.35 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -2.05 Total: -54.64 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -85.41 0.78 -84.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274069282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.427 kcal (2) G-P(sol) polarization free energy of solvation -85.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds