Wall clock time and date at job start Tue Mar 31 2020 21:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47181 * 2 1 4 4 O 1.42895 * 109.47235 * 120.00272 * 2 1 3 5 5 C 1.42900 * 114.00010 * 269.99813 * 4 2 1 6 6 C 1.53004 * 109.47151 * 180.02562 * 5 4 2 7 7 C 1.53000 * 117.49416 * 243.74680 * 6 5 4 8 8 C 1.53001 * 117.49920 * 175.08817 * 6 5 4 9 9 C 1.50699 * 109.47046 * 240.00620 * 2 1 3 10 10 O 1.21285 * 120.00021 * 255.43709 * 9 2 1 11 11 N 1.34776 * 120.00359 * 75.42803 * 9 2 1 12 12 C 1.47080 * 125.62787 * 354.67033 * 11 9 2 13 13 C 1.54461 * 107.29745 * 178.99445 * 12 11 9 14 14 C 1.54376 * 102.86826 * 338.49862 * 13 12 11 15 15 C 1.47577 * 125.62994 * 174.63922 * 11 9 2 16 16 C 1.52355 * 110.38064 * 152.41673 * 14 13 12 17 17 N 1.47337 * 108.44241 * 73.37223 * 16 14 13 18 18 C 1.36932 * 121.08241 * 229.16515 * 17 16 14 19 19 H 1.07993 * 120.00143 * 153.52503 * 18 17 16 20 20 C 1.38808 * 119.99795 * 333.52671 * 18 17 16 21 21 N 1.31625 * 120.00218 * 344.90526 * 20 18 17 22 22 Si 1.86804 * 120.00007 * 164.90997 * 20 18 17 23 23 H 1.48501 * 109.47133 * 89.99686 * 22 20 18 24 24 H 1.48502 * 109.47105 * 210.00075 * 22 20 18 25 25 H 1.48501 * 109.46936 * 329.99943 * 22 20 18 26 26 C 1.47248 * 117.79129 * 49.16160 * 17 16 14 27 27 C 1.53275 * 108.58961 * 308.80165 * 26 17 16 28 28 O 1.41891 * 110.71739 * 276.30773 * 14 13 12 29 29 H 1.09003 * 109.47551 * 63.45629 * 1 2 3 30 30 H 1.09002 * 109.47140 * 183.46243 * 1 2 3 31 31 H 1.09008 * 109.46955 * 303.45654 * 1 2 3 32 32 H 1.09001 * 109.47112 * 300.00405 * 5 4 2 33 33 H 1.09002 * 109.47423 * 59.99979 * 5 4 2 34 34 H 1.08993 * 115.55106 * 29.41340 * 6 5 4 35 35 H 1.08999 * 117.50016 * 0.02562 * 7 6 5 36 36 H 1.09009 * 117.49683 * 145.01776 * 7 6 5 37 37 H 1.08989 * 117.49904 * 214.97570 * 8 6 5 38 38 H 1.09002 * 117.49958 * 359.97438 * 8 6 5 39 39 H 1.08999 * 109.87982 * 59.57131 * 12 11 9 40 40 H 1.08997 * 109.87795 * 298.41564 * 12 11 9 41 41 H 1.09003 * 110.73617 * 220.15972 * 13 12 11 42 42 H 1.08997 * 110.89170 * 96.91240 * 13 12 11 43 43 H 1.08999 * 110.37269 * 84.50620 * 15 11 9 44 44 H 1.09002 * 110.37780 * 322.15542 * 15 11 9 45 45 H 1.09006 * 109.67684 * 193.12074 * 16 14 13 46 46 H 1.09006 * 109.68032 * 313.62737 * 16 14 13 47 47 H 0.97005 * 119.99856 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.60406 * 189.06519 * 26 17 16 49 49 H 1.08999 * 109.76219 * 68.62106 * 26 17 16 50 50 H 1.09004 * 109.51152 * 293.06674 * 27 26 17 51 51 H 1.09000 * 109.50960 * 172.92314 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 0.1829 2.2940 6 6 2.7092 -0.6407 3.4788 7 6 1.8125 -0.7283 4.7154 8 6 3.0892 0.1154 4.7534 9 6 2.0323 -0.7103 -1.2305 10 8 2.4834 -1.8325 -1.1413 11 7 1.9801 -0.0985 -2.4303 12 6 1.3608 1.2081 -2.6996 13 6 1.5646 1.5124 -4.2001 14 6 2.7628 0.6135 -4.5736 15 6 2.5354 -0.6288 -3.6906 16 6 2.7055 0.2390 -6.0493 17 7 3.0720 1.4234 -6.8453 18 6 2.3013 1.8318 -7.9010 19 1 2.3014 2.8695 -8.2000 20 6 1.5201 0.9119 -8.5867 21 7 1.7328 -0.3777 -8.4314 22 14 0.1668 1.5042 -9.7301 23 1 0.7171 1.6829 -11.0977 24 1 -0.9272 0.5005 -9.7639 25 1 -0.3654 2.8001 -9.2375 26 6 4.2941 2.1529 -6.4679 27 6 4.2356 2.4610 -4.9676 28 8 3.9884 1.2495 -4.2469 29 1 -0.3634 0.4592 -0.9193 30 1 -0.3633 -1.0258 0.0621 31 1 -0.3633 0.5666 0.8575 32 1 2.9320 0.9513 2.0449 33 1 1.2539 0.6546 2.5589 34 1 3.2984 -1.5207 3.2210 35 1 0.8598 -0.1996 4.6847 36 1 1.8121 -1.6659 5.2714 37 1 3.9281 -0.2674 5.3344 38 1 2.9770 1.1996 4.7479 39 1 1.8424 1.9778 -2.0966 40 1 0.2958 1.1676 -2.4710 41 1 1.8094 2.5639 -4.3509 42 1 0.6813 1.2369 -4.7761 43 1 1.8239 -1.3056 -4.1637 44 1 3.4800 -1.1397 -3.5039 45 1 3.4079 -0.5700 -6.2502 46 1 1.6956 -0.0791 -6.3083 47 1 1.1871 -1.0205 -8.9109 48 1 4.3525 3.0844 -7.0310 49 1 5.1699 1.5404 -6.6819 50 1 3.4317 3.1710 -4.7728 51 1 5.1854 2.8885 -4.6464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282774728.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:27 Heat of formation + Delta-G solvation = -60.797414 kcal Electronic energy + Delta-G solvation = -30814.830001 eV Core-core repulsion = 26716.542847 eV Total energy + Delta-G solvation = -4098.287154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.40273 -39.21226 -38.20560 -36.73775 -36.02361 -34.49185 -32.32493 -31.33487 -30.81105 -29.56981 -27.49131 -27.34838 -25.95067 -24.19006 -23.38522 -22.72952 -22.39709 -21.34680 -21.06369 -19.40542 -18.74600 -17.56022 -17.18373 -16.82245 -16.16033 -15.84478 -15.57900 -15.24565 -14.99281 -14.87235 -14.45115 -14.36604 -14.25212 -13.82490 -13.45706 -13.32369 -13.10336 -12.92591 -12.75601 -12.55107 -12.48327 -12.13259 -12.10476 -11.90827 -11.79845 -11.38730 -11.24596 -11.09475 -10.92626 -10.89647 -10.78784 -10.72148 -10.63474 -10.33839 -10.31998 -10.00150 -9.90427 -9.58894 -9.44840 -9.07575 -8.59544 -8.45141 -6.79038 -5.89226 -3.33228 2.63864 2.77263 3.29951 3.37540 3.38516 3.39828 3.69247 4.14720 4.37219 4.41314 4.52216 4.54763 4.69753 4.73797 4.82693 4.87591 4.97713 5.01566 5.14810 5.16254 5.28233 5.30062 5.33149 5.36968 5.41936 5.49108 5.53779 5.54439 5.65443 5.75418 5.76752 5.83228 5.89112 5.93828 5.96720 6.04254 6.12378 6.23431 6.28116 6.39649 6.47375 6.60051 6.75253 6.92797 7.02302 7.40789 7.64790 7.66103 7.89129 8.27159 8.29397 9.05649 9.68281 10.26238 11.19083 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022426 B = 0.002460 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.247523 B =11379.102587 C =11820.229325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.078 3.922 3 H 0.082 0.918 4 O -0.354 6.354 5 C 0.091 3.909 6 C -0.152 4.152 7 C -0.177 4.177 8 C -0.174 4.174 9 C 0.530 3.470 10 O -0.524 6.524 11 N -0.611 5.611 12 C 0.100 3.900 13 C -0.144 4.144 14 C 0.085 3.915 15 C 0.126 3.874 16 C 0.163 3.837 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.068 0.932 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.374 6.374 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.030 0.970 46 H 0.099 0.901 47 H 0.256 0.744 48 H 0.062 0.938 49 H 0.027 0.973 50 H 0.047 0.953 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.775 5.366 20.642 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.016 3.984 3 H 0.100 0.900 4 O -0.272 6.272 5 C 0.014 3.986 6 C -0.170 4.170 7 C -0.214 4.214 8 C -0.211 4.211 9 C 0.317 3.683 10 O -0.399 6.399 11 N -0.346 5.346 12 C -0.023 4.023 13 C -0.182 4.182 14 C 0.043 3.957 15 C 0.004 3.996 16 C 0.037 3.963 17 N -0.316 5.316 18 C -0.382 4.382 19 H 0.086 0.914 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.205 1.205 26 C -0.018 4.018 27 C -0.031 4.031 28 O -0.293 6.293 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.048 0.952 46 H 0.117 0.883 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.045 0.955 50 H 0.065 0.935 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.462 4.310 20.817 21.309 hybrid contribution -0.876 0.761 -0.894 1.465 sum -2.338 5.071 19.923 20.691 Atomic orbital electron populations 1.22258 0.93546 1.03999 1.03127 1.21814 0.95163 0.95993 0.85391 0.90006 1.88040 1.86526 1.33974 1.18698 1.22110 0.98976 0.92065 0.85451 1.22124 1.04072 1.02530 0.88276 1.23082 0.94897 1.02143 1.01297 1.22988 0.99341 0.98833 0.99964 1.19889 0.79175 0.86277 0.82964 1.90713 1.45573 1.18308 1.85292 1.48487 1.57394 1.20926 1.07811 1.22212 0.97136 0.84651 0.98301 1.23030 1.00301 1.01979 0.92852 1.22713 0.83857 0.91346 0.97767 1.22115 0.99632 0.95472 0.82356 1.21146 1.02645 0.89051 0.83488 1.44074 1.23370 1.30912 1.33258 1.19140 1.19682 0.92554 1.06789 0.91397 1.25063 1.01154 0.95264 0.98098 1.69995 1.40172 0.99956 1.44639 0.86284 0.81728 0.77840 0.80832 1.21330 1.21472 1.20467 1.21602 0.90508 0.96787 0.92889 1.23094 0.99728 0.86338 0.93987 1.87660 1.38417 1.38946 1.64282 0.90593 0.90885 0.91392 0.92740 0.93028 0.86588 0.88691 0.88573 0.88349 0.88666 0.91815 0.91454 0.89507 0.89282 0.89561 0.89789 0.95159 0.88318 0.93390 0.91943 0.95541 0.93497 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.45 37.16 0.35 -1.36 16 2 C 0.08 0.97 2.53 -27.88 -0.07 0.90 16 3 H 0.08 0.85 7.35 -51.93 -0.38 0.47 16 4 O -0.35 -4.85 9.57 -54.65 -0.52 -5.37 16 5 C 0.09 0.89 6.03 37.16 0.22 1.12 16 6 C -0.15 -1.40 6.05 -90.62 -0.55 -1.95 16 7 C -0.18 -1.32 10.18 -26.69 -0.27 -1.59 16 8 C -0.17 -1.21 10.26 -26.69 -0.27 -1.49 16 9 C 0.53 8.73 7.14 -10.99 -0.08 8.65 16 10 O -0.52 -10.80 16.88 -13.87 -0.23 -11.03 16 11 N -0.61 -9.58 3.33 -170.77 -0.57 -10.15 16 12 C 0.10 1.30 6.11 -2.96 -0.02 1.28 16 13 C -0.14 -2.27 5.87 -25.24 -0.15 -2.41 16 14 C 0.09 1.57 0.84 -89.65 -0.08 1.49 16 15 C 0.13 2.24 6.07 -2.88 -0.02 2.22 16 16 C 0.16 3.68 4.05 -3.91 -0.02 3.66 16 17 N -0.59 -13.98 2.98 -172.18 -0.51 -14.49 16 18 C -0.25 -6.49 9.67 -15.06 -0.15 -6.64 16 19 H 0.07 1.71 7.87 -52.49 -0.41 1.30 16 20 C 0.00 0.08 4.99 -17.43 -0.09 -0.01 16 21 N -0.90 -25.03 11.08 55.49 0.61 -24.41 16 22 Si 0.90 20.66 29.58 -169.99 -5.03 15.63 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.11 2.17 6.72 -3.49 -0.02 2.14 16 27 C 0.05 0.78 6.78 37.30 0.25 1.04 16 28 O -0.37 -7.03 10.29 -35.22 -0.36 -7.39 16 29 H 0.08 0.69 5.84 -51.93 -0.30 0.38 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.53 7.95 -51.92 -0.41 0.12 16 32 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.05 0.42 7.68 -51.93 -0.40 0.02 16 34 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.09 0.63 8.03 -51.93 -0.42 0.22 16 36 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.10 0.61 8.14 -51.94 -0.42 0.18 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.74 7.86 -51.93 -0.41 0.33 16 40 H 0.07 0.73 6.24 -51.93 -0.32 0.40 16 41 H 0.09 1.36 6.07 -51.93 -0.32 1.04 16 42 H 0.09 1.48 7.82 -51.93 -0.41 1.07 16 43 H 0.09 1.51 7.99 -51.93 -0.42 1.10 16 44 H 0.08 1.59 8.11 -51.93 -0.42 1.17 16 45 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.10 2.43 5.95 -51.93 -0.31 2.12 16 47 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 49 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.05 0.76 6.22 -51.93 -0.32 0.43 16 51 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 398.25 15.07 6.00 6.00 Total: -1.00 -31.80 398.25 -10.16 -41.96 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -8.60 Total: 2.21 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -0.95 Total: 7.06 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.47 Total: -49.06 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -1.12 Total: -23.80 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.80 -10.16 -41.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282774728.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.838 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds