Wall clock time and date at job start Tue Mar 31 2020 21:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46958 * 2 1 4 4 O 1.42895 * 109.47585 * 239.99710 * 2 1 3 5 5 C 1.42900 * 114.00030 * 89.99523 * 4 2 1 6 6 C 1.53002 * 109.47046 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.48517 * 304.98509 * 6 5 4 8 8 C 1.53093 * 109.47995 * 184.94222 * 6 5 4 9 9 C 1.53180 * 109.16089 * 182.40906 * 8 6 5 10 10 C 1.53180 * 109.03229 * 56.98719 * 9 8 6 11 11 C 1.53093 * 109.16265 * 303.01301 * 10 9 8 12 12 O 1.42902 * 109.41283 * 57.61303 * 11 10 9 13 13 C 1.50709 * 109.47121 * 119.99201 * 2 1 3 14 14 O 1.21277 * 119.99802 * 119.99987 * 13 2 1 15 15 N 1.34770 * 120.00048 * 300.28046 * 13 2 1 16 16 C 1.46496 * 120.00046 * 179.72221 * 15 13 2 17 17 H 1.09001 * 115.51458 * 9.41192 * 16 15 13 18 18 C 1.53008 * 117.44593 * 224.00350 * 16 15 13 19 19 H 1.09003 * 119.53491 * 4.11771 * 18 16 15 20 20 C 1.54391 * 118.12325 * 160.80490 * 18 16 15 21 21 N 1.48146 * 104.61221 * 87.19212 * 20 18 16 22 22 C 1.36942 * 127.83668 * 140.41607 * 21 20 18 23 23 H 1.08007 * 119.99747 * 343.71911 * 22 21 20 24 24 C 1.38807 * 119.99926 * 163.71942 * 22 21 20 25 25 N 1.31616 * 120.00589 * 351.61721 * 24 22 21 26 26 Si 1.86808 * 119.99885 * 171.61888 * 24 22 21 27 27 H 1.48502 * 109.46811 * 94.97614 * 26 24 22 28 28 H 1.48490 * 109.47321 * 214.97985 * 26 24 22 29 29 H 1.48506 * 109.46766 * 334.98171 * 26 24 22 30 30 C 1.51693 * 104.55199 * 320.18438 * 21 20 18 31 31 C 1.53002 * 117.44461 * 154.83285 * 16 15 13 32 32 H 1.08994 * 119.54005 * 355.88226 * 31 16 15 33 33 H 1.08995 * 109.46744 * 60.00369 * 1 2 3 34 34 H 1.09002 * 109.46826 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.47059 * 300.00414 * 1 2 3 36 36 H 1.08993 * 109.47579 * 300.00564 * 5 4 2 37 37 H 1.09005 * 109.46747 * 60.00518 * 5 4 2 38 38 H 1.08996 * 109.52559 * 302.32368 * 8 6 5 39 39 H 1.09003 * 109.51676 * 62.51137 * 8 6 5 40 40 H 1.08995 * 109.54684 * 297.11760 * 9 8 6 41 41 H 1.09003 * 109.61185 * 176.89022 * 9 8 6 42 42 H 1.09000 * 109.51827 * 183.10823 * 10 9 8 43 43 H 1.08998 * 109.52284 * 62.92264 * 10 9 8 44 44 H 1.08999 * 109.47933 * 297.63003 * 11 10 9 45 45 H 1.09002 * 109.48529 * 177.59757 * 11 10 9 46 46 H 0.97001 * 120.00260 * 359.72527 * 15 13 2 47 47 H 1.08998 * 110.40672 * 205.97287 * 20 18 16 48 48 H 1.08994 * 110.40491 * 328.40892 * 20 18 16 49 49 H 0.96998 * 120.00733 * 180.02562 * 25 24 22 50 50 H 1.08994 * 111.96278 * 281.13168 * 30 21 20 51 51 H 1.08999 * 110.49096 * 157.55580 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6737 -1.1667 5 6 2.2001 0.1828 -2.2940 6 6 2.7093 -0.6407 -3.4787 7 1 3.6085 -1.1824 -3.1852 8 6 3.0339 0.2930 -4.6477 9 6 3.4854 -0.5435 -5.8489 10 6 2.3855 -1.5509 -6.1978 11 6 2.0859 -2.4134 -4.9689 12 8 1.7019 -1.5716 -3.8799 13 6 2.0324 -0.7103 1.2306 14 8 2.7296 -1.6963 1.1195 15 7 1.7022 -0.2530 2.4546 16 6 2.1855 -0.9470 3.6508 17 1 2.9312 -1.7222 3.4748 18 6 1.1853 -1.1755 4.7860 19 1 0.1437 -0.8840 4.6512 20 6 1.5085 -2.2636 5.8325 21 7 2.3311 -1.5701 6.8509 22 6 2.2861 -1.7201 8.2114 23 1 1.4348 -2.1972 8.6742 24 6 3.3346 -1.2590 8.9954 25 7 4.4415 -0.8291 8.4277 26 14 3.1748 -1.2488 10.8566 27 1 3.7724 -2.4898 11.4116 28 1 3.8857 -0.0675 11.4080 29 1 1.7389 -1.1810 11.2297 30 6 3.2410 -0.6586 6.0496 31 6 2.3079 -0.1302 4.9388 32 1 2.1027 0.9400 4.9180 33 1 -0.3632 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 -0.3633 0.5139 0.8900 36 1 1.2539 0.6545 -2.5588 37 1 2.9320 0.9513 -2.0450 38 1 2.1452 0.8645 -4.9151 39 1 3.8332 0.9751 -4.3578 40 1 4.4022 -1.0769 -5.5979 41 1 3.6656 0.1098 -6.7026 42 1 2.7210 -2.1874 -7.0166 43 1 1.4837 -1.0166 -6.4965 44 1 2.9771 -2.9782 -4.6952 45 1 1.2742 -3.1038 -5.1985 46 1 1.1444 0.5356 2.5436 47 1 0.5907 -2.6446 6.2804 48 1 2.0745 -3.0749 5.3749 49 1 5.1743 -0.5072 8.9756 50 1 4.0807 -1.2007 5.6147 51 1 3.5984 0.1641 6.6689 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317214334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:37 Heat of formation + Delta-G solvation = -73.048623 kcal Electronic energy + Delta-G solvation = -29137.836330 eV Core-core repulsion = 25039.017924 eV Total energy + Delta-G solvation = -4098.818406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.16461 -39.70247 -38.51305 -37.35766 -34.38999 -33.99745 -33.09488 -32.47539 -31.12688 -29.91294 -27.37807 -27.12653 -25.78364 -24.75703 -24.14868 -22.52984 -21.77710 -20.71010 -20.48151 -20.05654 -19.18784 -17.40840 -17.26738 -16.88010 -16.74888 -16.26303 -16.01598 -15.41492 -15.05149 -14.87998 -14.68919 -14.60016 -14.26457 -13.84916 -13.61033 -13.19042 -13.12575 -12.95965 -12.90130 -12.73197 -12.63684 -12.17765 -12.13930 -11.79142 -11.62169 -11.50797 -11.45035 -11.41854 -11.05617 -10.97914 -10.82394 -10.68689 -10.42114 -10.19296 -10.13896 -10.08986 -9.77719 -9.68586 -9.49656 -9.17817 -8.73169 -8.32352 -6.84979 -5.77901 -3.11336 2.60471 2.74520 3.39149 3.40329 3.44815 3.46922 3.61640 4.30350 4.34551 4.39838 4.44504 4.47990 4.54296 4.60554 4.67884 4.74385 4.78385 4.92725 4.98705 5.04492 5.15870 5.17369 5.26544 5.28559 5.35615 5.36785 5.39739 5.43402 5.47197 5.49159 5.57729 5.58620 5.66242 5.80926 5.84342 5.87030 5.91421 6.15461 6.23527 6.54610 6.71762 6.73287 6.88163 6.91825 6.96489 7.31910 7.52551 7.58740 7.71043 8.16450 8.30797 9.07894 9.74394 10.51714 11.37362 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.034260 B = 0.001677 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.094019 B =16693.423515 C =16829.782732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.072 3.928 3 H 0.086 0.914 4 O -0.347 6.347 5 C 0.067 3.933 6 C 0.093 3.907 7 H 0.069 0.931 8 C -0.148 4.148 9 C -0.122 4.122 10 C -0.158 4.158 11 C 0.059 3.941 12 O -0.369 6.369 13 C 0.515 3.485 14 O -0.516 6.516 15 N -0.696 5.696 16 C 0.096 3.904 17 H 0.132 0.868 18 C -0.181 4.181 19 H 0.103 0.897 20 C 0.158 3.842 21 N -0.598 5.598 22 C -0.224 4.224 23 H 0.077 0.923 24 C -0.007 4.007 25 N -0.917 5.917 26 Si 0.912 3.088 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.186 3.814 31 C -0.178 4.178 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.094 0.906 46 H 0.398 0.602 47 H 0.052 0.948 48 H 0.026 0.974 49 H 0.254 0.746 50 H 0.033 0.967 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.228 6.129 -29.148 30.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.011 3.989 3 H 0.103 0.897 4 O -0.264 6.264 5 C -0.009 4.009 6 C 0.035 3.965 7 H 0.087 0.913 8 C -0.186 4.186 9 C -0.159 4.159 10 C -0.195 4.195 11 C -0.017 4.017 12 O -0.288 6.288 13 C 0.300 3.700 14 O -0.390 6.390 15 N -0.347 5.347 16 C -0.009 4.009 17 H 0.149 0.851 18 C -0.203 4.203 19 H 0.121 0.879 20 C 0.031 3.969 21 N -0.323 5.323 22 C -0.353 4.353 23 H 0.094 0.906 24 C -0.204 4.204 25 N -0.563 5.563 26 Si 0.742 3.258 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.206 1.206 30 C 0.061 3.939 31 C -0.199 4.199 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.112 0.888 46 H 0.232 0.768 47 H 0.070 0.930 48 H 0.044 0.956 49 H 0.064 0.936 50 H 0.051 0.949 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.722 5.220 -28.914 29.933 hybrid contribution -0.189 0.862 0.784 1.180 sum -5.910 6.082 -28.130 29.381 Atomic orbital electron populations 1.22231 0.93507 1.04098 1.02885 1.21881 0.95145 0.96134 0.85764 0.89664 1.88118 1.86464 1.33463 1.18387 1.22618 1.00338 0.92440 0.85545 1.22049 0.92007 0.90427 0.92003 0.91275 1.22140 1.02385 0.98550 0.95547 1.21568 0.98460 0.97998 0.97895 1.22219 0.99645 0.98896 0.98782 1.22576 1.00937 0.92269 0.85956 1.88010 1.39875 1.49999 1.50873 1.20293 0.80662 0.85056 0.83992 1.90732 1.36588 1.25392 1.86297 1.45310 1.53282 1.31351 1.04713 1.21871 1.00305 0.99250 0.79516 0.85070 1.24363 0.94995 1.01799 0.99122 0.87907 1.21067 0.95151 0.91839 0.88834 1.46029 1.40899 1.44359 1.01005 1.19015 1.01640 1.34915 0.79696 0.90574 1.24890 0.95155 1.02104 0.98218 1.69883 1.04573 1.48019 1.33831 0.86108 0.77391 0.77242 0.85042 1.21536 1.21625 1.20552 1.21662 0.89540 0.94568 0.88106 1.24575 1.02625 0.96454 0.96249 0.88051 0.91267 0.90837 0.91012 0.92269 0.91666 0.90787 0.90526 0.91582 0.91251 0.90859 0.91067 0.93067 0.88804 0.76829 0.92998 0.95583 0.93592 0.94944 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.42 37.16 0.35 -1.11 16 2 C 0.07 0.78 3.14 -27.88 -0.09 0.70 16 3 H 0.09 0.68 7.79 -51.93 -0.40 0.27 16 4 O -0.35 -4.49 9.49 -59.72 -0.57 -5.06 16 5 C 0.07 0.61 5.41 37.16 0.20 0.81 16 6 C 0.09 0.85 2.93 -26.68 -0.08 0.77 16 7 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 8 C -0.15 -0.93 5.42 -26.59 -0.14 -1.08 16 9 C -0.12 -0.69 6.03 -26.55 -0.16 -0.85 16 10 C -0.16 -0.93 6.14 -26.59 -0.16 -1.09 16 11 C 0.06 0.47 6.84 37.21 0.25 0.72 16 12 O -0.37 -3.99 10.37 -40.06 -0.42 -4.41 16 13 C 0.52 7.63 7.23 -10.98 -0.08 7.55 16 14 O -0.52 -10.21 16.07 -14.35 -0.23 -10.44 16 15 N -0.70 -9.36 5.45 -53.80 -0.29 -9.65 16 16 C 0.10 1.64 5.97 -67.93 -0.41 1.24 16 17 H 0.13 2.59 7.40 -51.93 -0.38 2.20 16 18 C -0.18 -3.24 7.05 -89.28 -0.63 -3.87 16 19 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 20 C 0.16 3.39 7.05 -2.41 -0.02 3.37 16 21 N -0.60 -15.45 3.45 -165.82 -0.57 -16.02 16 22 C -0.22 -6.28 10.36 -15.06 -0.16 -6.44 16 23 H 0.08 2.06 7.84 -52.48 -0.41 1.65 16 24 C -0.01 -0.19 5.42 -17.43 -0.09 -0.28 16 25 N -0.92 -26.92 10.87 55.49 0.60 -26.32 16 26 Si 0.91 21.98 29.56 -169.99 -5.03 16.96 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 30 C 0.19 4.46 5.89 -0.37 0.00 4.46 16 31 C -0.18 -3.32 6.96 -89.29 -0.62 -3.94 16 32 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 33 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.48 7.55 -51.93 -0.39 0.09 16 36 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 37 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.40 4.01 8.24 -40.82 -0.34 3.67 16 47 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.09 2.39 6.64 -51.93 -0.34 2.05 16 LS Contribution 407.56 15.07 6.14 6.14 Total: -1.00 -34.79 407.56 -11.18 -45.97 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.99 Total: 1.87 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.83 Total: 0.95 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.26 Total: -51.99 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -1.21 Total: -19.91 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.79 -11.18 -45.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317214334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.078 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds