Wall clock time and date at job start Tue Mar 31 2020 21:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46958 * 2 1 4 4 O 1.42895 * 109.47585 * 239.99710 * 2 1 3 5 5 C 1.42900 * 114.00030 * 89.99523 * 4 2 1 6 6 C 1.53002 * 109.47046 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.48517 * 304.98509 * 6 5 4 8 8 C 1.53093 * 109.47995 * 184.94222 * 6 5 4 9 9 C 1.53180 * 109.16089 * 182.40906 * 8 6 5 10 10 C 1.53180 * 109.03229 * 56.98719 * 9 8 6 11 11 C 1.53093 * 109.16265 * 303.01301 * 10 9 8 12 12 O 1.42902 * 109.41283 * 57.61303 * 11 10 9 13 13 C 1.50709 * 109.47121 * 119.99201 * 2 1 3 14 14 O 1.21277 * 119.99802 * 119.99987 * 13 2 1 15 15 N 1.34770 * 120.00048 * 300.28046 * 13 2 1 16 16 C 1.46496 * 120.00046 * 179.72221 * 15 13 2 17 17 H 1.09001 * 115.51458 * 9.41192 * 16 15 13 18 18 C 1.53008 * 117.44593 * 224.00350 * 16 15 13 19 19 H 1.09003 * 119.53491 * 4.11771 * 18 16 15 20 20 C 1.54391 * 118.12325 * 160.80490 * 18 16 15 21 21 N 1.48146 * 104.61221 * 87.19212 * 20 18 16 22 22 C 1.36942 * 127.83668 * 140.41607 * 21 20 18 23 23 H 1.08007 * 119.99747 * 343.71911 * 22 21 20 24 24 C 1.38807 * 119.99926 * 163.71942 * 22 21 20 25 25 N 1.31616 * 120.00589 * 351.61721 * 24 22 21 26 26 Si 1.86808 * 119.99885 * 171.61888 * 24 22 21 27 27 H 1.48502 * 109.46811 * 94.97614 * 26 24 22 28 28 H 1.48490 * 109.47321 * 214.97985 * 26 24 22 29 29 H 1.48506 * 109.46766 * 334.98171 * 26 24 22 30 30 C 1.51693 * 104.55199 * 320.18438 * 21 20 18 31 31 C 1.53002 * 117.44461 * 154.83285 * 16 15 13 32 32 H 1.08994 * 119.54005 * 355.88226 * 31 16 15 33 33 H 1.08995 * 109.46744 * 60.00369 * 1 2 3 34 34 H 1.09002 * 109.46826 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.47059 * 300.00414 * 1 2 3 36 36 H 1.08993 * 109.47579 * 300.00564 * 5 4 2 37 37 H 1.09005 * 109.46747 * 60.00518 * 5 4 2 38 38 H 1.08996 * 109.52559 * 302.32368 * 8 6 5 39 39 H 1.09003 * 109.51676 * 62.51137 * 8 6 5 40 40 H 1.08995 * 109.54684 * 297.11760 * 9 8 6 41 41 H 1.09003 * 109.61185 * 176.89022 * 9 8 6 42 42 H 1.09000 * 109.51827 * 183.10823 * 10 9 8 43 43 H 1.08998 * 109.52284 * 62.92264 * 10 9 8 44 44 H 1.08999 * 109.47933 * 297.63003 * 11 10 9 45 45 H 1.09002 * 109.48529 * 177.59757 * 11 10 9 46 46 H 0.97001 * 120.00260 * 359.72527 * 15 13 2 47 47 H 1.08998 * 110.40672 * 205.97287 * 20 18 16 48 48 H 1.08994 * 110.40491 * 328.40892 * 20 18 16 49 49 H 0.96998 * 120.00733 * 180.02562 * 25 24 22 50 50 H 1.08994 * 111.96278 * 281.13168 * 30 21 20 51 51 H 1.08999 * 110.49096 * 157.55580 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6737 -1.1667 5 6 2.2001 0.1828 -2.2940 6 6 2.7093 -0.6407 -3.4787 7 1 3.6085 -1.1824 -3.1852 8 6 3.0339 0.2930 -4.6477 9 6 3.4854 -0.5435 -5.8489 10 6 2.3855 -1.5509 -6.1978 11 6 2.0859 -2.4134 -4.9689 12 8 1.7019 -1.5716 -3.8799 13 6 2.0324 -0.7103 1.2306 14 8 2.7296 -1.6963 1.1195 15 7 1.7022 -0.2530 2.4546 16 6 2.1855 -0.9470 3.6508 17 1 2.9312 -1.7222 3.4748 18 6 1.1853 -1.1755 4.7860 19 1 0.1437 -0.8840 4.6512 20 6 1.5085 -2.2636 5.8325 21 7 2.3311 -1.5701 6.8509 22 6 2.2861 -1.7201 8.2114 23 1 1.4348 -2.1972 8.6742 24 6 3.3346 -1.2590 8.9954 25 7 4.4415 -0.8291 8.4277 26 14 3.1748 -1.2488 10.8566 27 1 3.7724 -2.4898 11.4116 28 1 3.8857 -0.0675 11.4080 29 1 1.7389 -1.1810 11.2297 30 6 3.2410 -0.6586 6.0496 31 6 2.3079 -0.1302 4.9388 32 1 2.1027 0.9400 4.9180 33 1 -0.3632 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 -0.3633 0.5139 0.8900 36 1 1.2539 0.6545 -2.5588 37 1 2.9320 0.9513 -2.0450 38 1 2.1452 0.8645 -4.9151 39 1 3.8332 0.9751 -4.3578 40 1 4.4022 -1.0769 -5.5979 41 1 3.6656 0.1098 -6.7026 42 1 2.7210 -2.1874 -7.0166 43 1 1.4837 -1.0166 -6.4965 44 1 2.9771 -2.9782 -4.6952 45 1 1.2742 -3.1038 -5.1985 46 1 1.1444 0.5356 2.5436 47 1 0.5907 -2.6446 6.2804 48 1 2.0745 -3.0749 5.3749 49 1 5.1743 -0.5072 8.9756 50 1 4.0807 -1.2007 5.6147 51 1 3.5984 0.1641 6.6689 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317214334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:36 Heat of formation + Delta-G solvation = -95.924646 kcal Electronic energy + Delta-G solvation = -29138.828309 eV Core-core repulsion = 25039.017924 eV Total energy + Delta-G solvation = -4099.810385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.29918 -40.48019 -39.87805 -38.38375 -36.00260 -34.55611 -34.53092 -33.43846 -32.34505 -31.33202 -28.91633 -27.98846 -27.63326 -25.62736 -24.91104 -23.42922 -23.11990 -21.99434 -21.50594 -21.10209 -20.79021 -18.86462 -18.39948 -18.18331 -17.56879 -17.20645 -16.93382 -16.68632 -16.32845 -15.91607 -15.61309 -15.43276 -15.42163 -15.09130 -14.87534 -14.63094 -14.53016 -13.79245 -13.69891 -13.62542 -13.54263 -13.32589 -13.30647 -13.20789 -12.88639 -12.76957 -12.72570 -12.46726 -12.17614 -12.14302 -12.02746 -11.97160 -11.85795 -11.64081 -11.59648 -11.27888 -11.03403 -10.86132 -10.73587 -10.49903 -10.38846 -9.72891 -8.92173 -7.91215 -5.27353 1.46188 1.47588 1.48460 1.58730 1.68606 2.48480 2.74343 2.81588 2.85231 3.29859 3.49409 3.61846 3.81081 3.83029 3.90936 3.91694 3.92776 3.96066 4.04894 4.05705 4.13002 4.17627 4.30191 4.37887 4.41440 4.49280 4.51539 4.64899 4.66946 4.73802 4.78427 4.84800 4.86685 4.89711 4.93157 4.98522 5.05428 5.11433 5.16413 5.23474 5.27476 5.37040 5.39012 5.44651 5.52238 5.63864 6.07815 6.12694 6.30818 6.53424 6.95667 7.20222 7.65080 8.45392 9.23660 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.034260 B = 0.001677 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.094019 B =16693.423515 C =16829.782732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.077 3.923 3 H 0.124 0.876 4 O -0.385 6.385 5 C 0.062 3.938 6 C 0.087 3.913 7 H 0.048 0.952 8 C -0.142 4.142 9 C -0.124 4.124 10 C -0.152 4.152 11 C 0.051 3.949 12 O -0.396 6.396 13 C 0.511 3.489 14 O -0.575 6.575 15 N -0.676 5.676 16 C 0.113 3.887 17 H 0.100 0.900 18 C -0.164 4.164 19 H 0.139 0.861 20 C 0.149 3.851 21 N -0.622 5.622 22 C -0.239 4.239 23 H 0.082 0.918 24 C -0.064 4.064 25 N -0.949 5.949 26 Si 0.981 3.019 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.266 1.266 30 C 0.187 3.813 31 C -0.172 4.172 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.099 0.901 46 H 0.420 0.580 47 H 0.064 0.936 48 H 0.013 0.987 49 H 0.250 0.750 50 H 0.002 0.998 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.403 8.342 -30.557 32.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 H 0.141 0.859 4 O -0.304 6.304 5 C -0.014 4.014 6 C 0.029 3.971 7 H 0.066 0.934 8 C -0.179 4.179 9 C -0.162 4.162 10 C -0.190 4.190 11 C -0.025 4.025 12 O -0.316 6.316 13 C 0.298 3.702 14 O -0.453 6.453 15 N -0.328 5.328 16 C 0.006 3.994 17 H 0.117 0.883 18 C -0.185 4.185 19 H 0.157 0.843 20 C 0.024 3.976 21 N -0.347 5.347 22 C -0.368 4.368 23 H 0.100 0.900 24 C -0.257 4.257 25 N -0.597 5.597 26 Si 0.809 3.191 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.190 1.190 30 C 0.062 3.938 31 C -0.193 4.193 32 H 0.149 0.851 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.062 0.938 45 H 0.117 0.883 46 H 0.259 0.741 47 H 0.082 0.918 48 H 0.031 0.969 49 H 0.059 0.941 50 H 0.020 0.980 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.950 7.464 -30.353 32.253 hybrid contribution 0.527 0.069 1.164 1.279 sum -7.424 7.533 -29.189 31.046 Atomic orbital electron populations 1.22236 0.91452 1.03315 1.05131 1.22000 0.96432 0.96749 0.83174 0.85889 1.88083 1.86919 1.35679 1.19719 1.22864 1.01836 0.92360 0.84299 1.22188 0.90898 0.90688 0.93341 0.93421 1.22106 1.03169 0.98144 0.94496 1.21617 0.98114 0.98141 0.98281 1.22176 0.99895 0.98868 0.98030 1.22738 1.00883 0.92580 0.86326 1.87959 1.40852 1.50786 1.51966 1.21209 0.79370 0.84346 0.85243 1.90714 1.39297 1.28190 1.87120 1.45060 1.52972 1.31595 1.03187 1.21371 0.99377 0.98193 0.80464 0.88258 1.24270 0.96602 0.99507 0.98102 0.84299 1.21201 0.94770 0.92573 0.89070 1.46356 1.41604 1.45520 1.01253 1.19419 1.01807 1.34436 0.81141 0.90030 1.25754 0.94902 1.02279 1.02798 1.70083 1.05246 1.49182 1.35217 0.85029 0.77884 0.76760 0.79413 1.21560 1.21809 1.19022 1.21410 0.89967 0.93170 0.89217 1.24264 1.01516 0.97968 0.95564 0.85097 0.89238 0.93118 0.88539 0.90593 0.89552 0.90046 0.89122 0.91987 0.89605 0.89465 0.90877 0.93794 0.88263 0.74143 0.91792 0.96924 0.94112 0.97953 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.42 71.98 0.68 -1.61 16 2 C 0.08 1.49 3.14 29.85 0.09 1.58 16 3 H 0.12 1.43 7.79 -2.39 -0.02 1.41 16 4 O -0.39 -9.63 9.49 -125.56 -1.19 -10.82 16 5 C 0.06 1.02 5.41 71.98 0.39 1.41 16 6 C 0.09 1.53 2.93 30.63 0.09 1.62 16 7 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 8 C -0.14 -1.52 5.42 30.69 0.17 -1.35 16 9 C -0.12 -1.21 6.03 30.71 0.19 -1.03 16 10 C -0.15 -1.61 6.14 30.69 0.19 -1.42 16 11 C 0.05 0.81 6.84 72.01 0.49 1.30 16 12 O -0.40 -8.55 10.37 -144.36 -1.50 -10.05 16 13 C 0.51 14.54 7.23 87.66 0.63 15.17 16 14 O -0.58 -23.30 16.07 16.02 0.26 -23.04 16 15 N -0.68 -16.57 5.45 -442.53 -2.41 -18.99 16 16 C 0.11 3.77 5.97 45.00 0.27 4.04 16 17 H 0.10 4.06 7.40 -2.39 -0.02 4.04 16 18 C -0.16 -5.55 7.05 -9.93 -0.07 -5.62 16 19 H 0.14 3.80 8.14 -2.39 -0.02 3.78 16 20 C 0.15 6.41 7.05 86.54 0.61 7.02 16 21 N -0.62 -32.69 3.45 -678.54 -2.34 -35.03 16 22 C -0.24 -13.55 10.36 84.03 0.87 -12.68 16 23 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 24 C -0.06 -3.65 5.42 84.86 0.46 -3.19 16 25 N -0.95 -57.58 10.87 21.65 0.24 -57.34 16 26 Si 0.98 45.68 29.56 68.60 2.03 47.71 16 27 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 28 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 29 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 30 C 0.19 9.28 5.89 85.83 0.51 9.79 16 31 C -0.17 -6.25 6.96 -9.93 -0.07 -6.32 16 32 H 0.13 4.01 8.14 -2.39 -0.02 3.99 16 33 H 0.09 0.92 7.87 -2.39 -0.02 0.90 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 0.85 7.55 -2.39 -0.02 0.83 16 36 H 0.08 0.96 7.87 -2.39 -0.02 0.94 16 37 H 0.09 0.99 8.09 -2.38 -0.02 0.98 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.42 6.66 8.24 -92.71 -0.76 5.90 16 47 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 48 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.25 14.65 8.31 -92.71 -0.77 13.87 16 50 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 51 H 0.06 3.38 6.64 -2.39 -0.02 3.37 16 Total: -1.00 -80.36 407.56 0.72 -79.64 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.15 Total: 19.22 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 5.49 Total: 8.71 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -4.52 Total: -111.36 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -2.43 Total: -43.91 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -80.36 0.72 -79.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317214334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.286 kcal (2) G-P(sol) polarization free energy of solvation -80.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds