Wall clock time and date at job start Tue Mar 31 2020 21:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47017 * 2 1 4 4 O 1.42899 * 109.47015 * 120.00014 * 2 1 3 5 5 C 1.42899 * 114.00233 * 269.99675 * 4 2 1 6 6 C 1.52998 * 109.47133 * 179.97438 * 5 4 2 7 7 H 1.09002 * 109.47954 * 305.02470 * 6 5 4 8 8 C 1.53091 * 109.48054 * 185.00188 * 6 5 4 9 9 C 1.53178 * 109.16563 * 182.40965 * 8 6 5 10 10 C 1.53175 * 109.03128 * 56.97886 * 9 8 6 11 11 C 1.53092 * 109.16939 * 303.02072 * 10 9 8 12 12 O 1.42899 * 109.41096 * 57.60997 * 11 10 9 13 13 C 1.50705 * 109.47092 * 240.00338 * 2 1 3 14 14 O 1.21278 * 119.99724 * 245.00379 * 13 2 1 15 15 N 1.34777 * 120.00218 * 64.99822 * 13 2 1 16 16 C 1.46500 * 119.99927 * 180.02562 * 15 13 2 17 17 H 1.08992 * 115.51210 * 9.42071 * 16 15 13 18 18 C 1.52998 * 117.40357 * 224.05922 * 16 15 13 19 19 H 1.08993 * 119.54241 * 4.10841 * 18 16 15 20 20 C 1.54391 * 118.11761 * 160.79755 * 18 16 15 21 21 N 1.48141 * 104.61990 * 87.19227 * 20 18 16 22 22 C 1.36935 * 127.83911 * 140.41423 * 21 20 18 23 23 H 1.08000 * 120.00183 * 343.74098 * 22 21 20 24 24 C 1.38813 * 119.99936 * 163.74272 * 22 21 20 25 25 N 1.31612 * 120.00216 * 351.61704 * 24 22 21 26 26 Si 1.86802 * 119.99711 * 171.61593 * 24 22 21 27 27 H 1.48500 * 109.47080 * 94.98443 * 26 24 22 28 28 H 1.48510 * 109.46895 * 214.97937 * 26 24 22 29 29 H 1.48495 * 109.47313 * 334.97958 * 26 24 22 30 30 C 1.51829 * 104.54904 * 320.13869 * 21 20 18 31 31 C 1.53002 * 117.43919 * 154.83402 * 16 15 13 32 32 H 1.08994 * 119.54104 * 355.83992 * 31 16 15 33 33 H 1.08998 * 109.47342 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47121 * 300.00253 * 1 2 3 35 35 H 1.09004 * 109.46852 * 59.99371 * 1 2 3 36 36 H 1.08991 * 109.47378 * 300.00356 * 5 4 2 37 37 H 1.09003 * 109.46514 * 60.00199 * 5 4 2 38 38 H 1.08999 * 109.52247 * 302.31577 * 8 6 5 39 39 H 1.09001 * 109.52124 * 62.50019 * 8 6 5 40 40 H 1.08991 * 109.54262 * 176.84517 * 9 8 6 41 41 H 1.09004 * 109.54230 * 297.02994 * 9 8 6 42 42 H 1.09007 * 109.52355 * 62.93193 * 10 9 8 43 43 H 1.09004 * 109.52108 * 183.04691 * 10 9 8 44 44 H 1.08996 * 109.48124 * 177.59636 * 11 10 9 45 45 H 1.08999 * 109.47619 * 297.63098 * 11 10 9 46 46 H 0.96998 * 119.99508 * 0.02562 * 15 13 2 47 47 H 1.09007 * 110.40463 * 205.97877 * 20 18 16 48 48 H 1.08999 * 110.40517 * 328.40118 * 20 18 16 49 49 H 0.97004 * 120.00490 * 180.02562 * 25 24 22 50 50 H 1.09001 * 111.95234 * 281.19436 * 30 21 20 51 51 H 1.08998 * 110.52828 * 157.59959 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2002 0.1829 2.2941 6 6 2.7079 -0.6409 3.4792 7 1 2.0194 -1.4637 3.6715 8 6 2.7968 0.2511 4.7202 9 6 3.3625 -0.5650 5.8865 10 6 4.7251 -1.1360 5.4821 11 6 4.5618 -1.9744 4.2117 12 8 4.0029 -1.1636 3.1762 13 6 2.0324 -0.7104 -1.2305 14 8 2.6529 -1.7466 -1.1216 15 7 1.7919 -0.1941 -2.4521 16 6 2.2798 -0.8850 -3.6483 17 1 2.6850 -1.8830 -3.4816 18 6 2.9329 -0.0315 -4.7373 19 1 3.0773 1.0357 -4.5693 20 6 3.8404 -0.7369 -5.7681 21 7 2.9158 -1.1858 -6.8350 22 6 3.1237 -1.1697 -8.1884 23 1 3.9190 -0.5698 -8.6055 24 6 2.3121 -1.9244 -9.0242 25 7 1.4535 -2.7798 -8.5112 26 14 2.4386 -1.7258 -10.8773 27 1 3.3569 -2.7567 -11.4241 28 1 1.0935 -1.8884 -11.4856 29 1 2.9656 -0.3744 -11.1955 30 6 1.6855 -1.6756 -6.0922 31 6 1.5316 -0.6377 -4.9598 32 1 0.6322 -0.0219 -4.9575 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 -0.3633 0.5140 -0.8900 36 1 2.9320 0.9512 2.0451 37 1 1.2538 0.6546 2.5588 38 1 3.4535 1.0965 4.5149 39 1 1.8026 0.6154 4.9789 40 1 3.4810 0.0785 6.7582 41 1 2.6802 -1.3809 6.1255 42 1 5.4208 -0.3186 5.2922 43 1 5.1106 -1.7628 6.2863 44 1 5.5355 -2.3483 3.8952 45 1 3.8977 -2.8148 4.4137 46 1 1.2959 0.6349 -2.5391 47 1 4.5738 -0.0377 -6.1701 48 1 4.3393 -1.5923 -5.3127 49 1 0.8866 -3.3075 -9.0953 50 1 1.8305 -2.6728 -5.6767 51 1 0.8128 -1.6582 -6.7450 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317214343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:40 Heat of formation + Delta-G solvation = -72.439454 kcal Electronic energy + Delta-G solvation = -29196.480853 eV Core-core repulsion = 25097.688862 eV Total energy + Delta-G solvation = -4098.791991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.14434 -39.67940 -38.49693 -37.34634 -34.35668 -33.98011 -33.06997 -32.46485 -31.13269 -29.91657 -27.38590 -27.11344 -25.77925 -24.70634 -24.17620 -22.51954 -21.75160 -20.70002 -20.46622 -20.03416 -19.18607 -17.37835 -17.26791 -16.87456 -16.74702 -16.27311 -15.92140 -15.34753 -15.20042 -14.90111 -14.65941 -14.53043 -14.20701 -13.86097 -13.57587 -13.23809 -13.06508 -12.99638 -12.78029 -12.71987 -12.63193 -12.37377 -12.14575 -11.71214 -11.57599 -11.49873 -11.45372 -11.41251 -11.04954 -10.97110 -10.81603 -10.64236 -10.40948 -10.17411 -10.14750 -10.10402 -9.74225 -9.67367 -9.47519 -9.15748 -8.72156 -8.30586 -6.83942 -5.76837 -3.10186 2.65976 2.72694 3.39874 3.43679 3.45452 3.47567 3.61711 4.33144 4.34058 4.40317 4.44549 4.48622 4.53166 4.61133 4.67229 4.75589 4.81673 4.89384 4.97992 5.03889 5.17593 5.18927 5.27296 5.28916 5.35635 5.37450 5.40827 5.41290 5.44643 5.49403 5.58848 5.59323 5.68468 5.82101 5.83016 5.85469 5.92428 6.17058 6.25276 6.55713 6.72758 6.73974 6.89974 6.93070 6.99974 7.33219 7.53783 7.60935 7.72059 8.17274 8.33948 9.08737 9.75356 10.52837 11.38418 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.030320 B = 0.001743 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.258610 B =16056.187158 C =16492.891866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.085 0.915 4 O -0.346 6.346 5 C 0.067 3.933 6 C 0.093 3.907 7 H 0.067 0.933 8 C -0.149 4.149 9 C -0.121 4.121 10 C -0.158 4.158 11 C 0.060 3.940 12 O -0.366 6.366 13 C 0.515 3.485 14 O -0.513 6.513 15 N -0.697 5.697 16 C 0.097 3.903 17 H 0.132 0.868 18 C -0.182 4.182 19 H 0.103 0.897 20 C 0.158 3.842 21 N -0.598 5.598 22 C -0.224 4.224 23 H 0.076 0.924 24 C -0.007 4.007 25 N -0.916 5.916 26 Si 0.912 3.088 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.186 3.814 31 C -0.177 4.177 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.050 0.950 46 H 0.397 0.603 47 H 0.051 0.949 48 H 0.026 0.974 49 H 0.254 0.746 50 H 0.033 0.967 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.426 9.496 29.492 31.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 H 0.103 0.897 4 O -0.264 6.264 5 C -0.010 4.010 6 C 0.035 3.965 7 H 0.085 0.915 8 C -0.187 4.187 9 C -0.158 4.158 10 C -0.196 4.196 11 C -0.017 4.017 12 O -0.284 6.284 13 C 0.299 3.701 14 O -0.386 6.386 15 N -0.348 5.348 16 C -0.009 4.009 17 H 0.149 0.851 18 C -0.204 4.204 19 H 0.121 0.879 20 C 0.031 3.969 21 N -0.323 5.323 22 C -0.353 4.353 23 H 0.094 0.906 24 C -0.204 4.204 25 N -0.563 5.563 26 Si 0.742 3.258 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.206 1.206 30 C 0.061 3.939 31 C -0.199 4.199 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.113 0.887 45 H 0.069 0.931 46 H 0.231 0.769 47 H 0.070 0.930 48 H 0.044 0.956 49 H 0.064 0.936 50 H 0.051 0.949 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.907 8.461 29.168 30.384 hybrid contribution -0.463 0.873 -0.665 1.191 sum -1.370 9.335 28.503 30.024 Atomic orbital electron populations 1.22248 0.93527 1.04079 1.03000 1.21881 0.94962 0.96200 0.85885 0.89736 1.88120 1.86445 1.33332 1.18522 1.22618 0.99283 0.92928 0.86174 1.22029 0.85998 0.95866 0.92569 0.91489 1.22147 1.02263 0.99192 0.95054 1.21562 0.96787 0.99804 0.97696 1.22226 0.97848 1.00936 0.98597 1.22578 0.99169 0.92487 0.87494 1.88069 1.31757 1.67693 1.40908 1.20275 0.80059 0.85790 0.83953 1.90743 1.38811 1.22907 1.86146 1.45309 1.57315 1.27232 1.04909 1.21866 1.01901 0.97375 0.79708 0.85070 1.24383 0.97592 0.98693 0.99705 0.87943 1.21064 0.91690 0.95713 0.88412 1.46061 1.12189 1.73284 1.00783 1.19012 1.15022 1.21411 0.79806 0.90586 1.24890 1.00035 0.97234 0.98232 1.69884 1.26408 1.26453 1.33539 0.86108 0.76972 0.77674 0.85029 1.21544 1.21627 1.20569 1.21685 0.92264 0.91331 0.88596 1.24587 0.95092 1.04408 0.95777 0.88050 0.90844 0.91375 0.90794 0.92263 0.91708 0.90742 0.90617 0.91282 0.91655 0.91011 0.90847 0.88702 0.93148 0.76897 0.93019 0.95585 0.93595 0.94921 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.48 37.16 0.35 -1.05 16 2 C 0.07 0.79 3.13 -27.88 -0.09 0.70 16 3 H 0.08 0.69 7.79 -51.93 -0.40 0.28 16 4 O -0.35 -4.49 9.49 -59.67 -0.57 -5.06 16 5 C 0.07 0.60 5.41 37.16 0.20 0.80 16 6 C 0.09 0.85 2.93 -26.69 -0.08 0.77 16 7 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 8 C -0.15 -0.92 5.42 -26.59 -0.14 -1.06 16 9 C -0.12 -0.68 6.03 -26.55 -0.16 -0.84 16 10 C -0.16 -1.00 6.13 -26.59 -0.16 -1.16 16 11 C 0.06 0.51 6.84 37.21 0.25 0.76 16 12 O -0.37 -4.32 10.37 -40.00 -0.41 -4.74 16 13 C 0.51 7.75 7.18 -10.98 -0.08 7.67 16 14 O -0.51 -10.36 16.07 -14.30 -0.23 -10.59 16 15 N -0.70 -9.50 5.52 -53.81 -0.30 -9.80 16 16 C 0.10 1.68 5.97 -67.93 -0.41 1.27 16 17 H 0.13 2.62 7.40 -51.93 -0.38 2.24 16 18 C -0.18 -3.29 7.06 -89.22 -0.63 -3.92 16 19 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 20 C 0.16 3.41 7.05 -2.41 -0.02 3.39 16 21 N -0.60 -15.53 3.45 -165.71 -0.57 -16.10 16 22 C -0.22 -6.30 10.36 -15.06 -0.16 -6.46 16 23 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 24 C -0.01 -0.20 5.42 -17.43 -0.09 -0.29 16 25 N -0.92 -27.01 10.86 55.49 0.60 -26.41 16 26 Si 0.91 22.06 29.56 -169.99 -5.03 17.03 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 30 C 0.19 4.49 5.90 -0.29 0.00 4.49 16 31 C -0.18 -3.34 6.96 -89.22 -0.62 -3.96 16 32 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 35 H 0.07 0.49 7.93 -51.93 -0.41 0.08 16 36 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 37 H 0.06 0.40 7.87 -51.93 -0.41 -0.01 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.40 4.04 8.61 -40.82 -0.35 3.69 16 47 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.09 2.41 6.63 -51.93 -0.34 2.06 16 LS Contribution 408.39 15.07 6.15 6.15 Total: -1.00 -35.32 408.39 -11.20 -46.52 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -9.02 Total: 1.86 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.83 Total: 1.13 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.27 Total: -52.30 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -1.21 Total: -20.39 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.32 -11.20 -46.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317214343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.922 kcal (2) G-P(sol) polarization free energy of solvation -35.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds