Wall clock time and date at job start Tue Mar 31 2020 21:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46980 * 2 1 4 4 O 1.42903 * 109.46951 * 120.00160 * 2 1 3 5 5 C 1.42900 * 113.99556 * 269.99560 * 4 2 1 6 6 C 1.53006 * 109.46855 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.47893 * 55.02579 * 6 5 4 8 8 C 1.53087 * 109.48804 * 175.05064 * 6 5 4 9 9 C 1.53183 * 109.16109 * 177.59639 * 8 6 5 10 10 C 1.53172 * 109.03971 * 303.02659 * 9 8 6 11 11 C 1.53087 * 109.16418 * 56.97591 * 10 9 8 12 12 O 1.42900 * 109.48278 * 295.00624 * 6 5 4 13 13 C 1.50700 * 109.47026 * 240.00081 * 2 1 3 14 14 O 1.21280 * 119.99657 * 244.99849 * 13 2 1 15 15 N 1.34776 * 119.99793 * 64.99916 * 13 2 1 16 16 C 1.46507 * 119.99675 * 180.02562 * 15 13 2 17 17 H 1.08996 * 115.51601 * 350.41197 * 16 15 13 18 18 C 1.52995 * 117.44102 * 204.99982 * 16 15 13 19 19 H 1.09004 * 119.53978 * 5.71218 * 18 16 15 20 20 C 1.54388 * 118.12230 * 160.80739 * 18 16 15 21 21 N 1.48142 * 104.61497 * 87.19189 * 20 18 16 22 22 C 1.36946 * 127.83492 * 140.41524 * 21 20 18 23 23 H 1.08001 * 119.99617 * 195.57039 * 22 21 20 24 24 C 1.38802 * 120.00254 * 15.57339 * 22 21 20 25 25 N 1.31621 * 120.00301 * 9.09316 * 24 22 21 26 26 Si 1.86800 * 120.00127 * 189.09591 * 24 22 21 27 27 H 1.48505 * 109.46958 * 59.99928 * 26 24 22 28 28 H 1.48504 * 109.47240 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47349 * 300.00156 * 26 24 22 30 30 C 1.48141 * 104.32744 * 320.41185 * 21 20 18 31 31 C 1.52996 * 117.44290 * 135.76066 * 16 15 13 32 32 H 1.09007 * 119.53966 * 355.87806 * 31 16 15 33 33 H 1.08999 * 109.47419 * 60.00044 * 1 2 3 34 34 H 1.09000 * 109.46980 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.46924 * 299.99633 * 1 2 3 36 36 H 1.08998 * 109.47056 * 60.00904 * 5 4 2 37 37 H 1.08995 * 109.47958 * 300.00193 * 5 4 2 38 38 H 1.09001 * 109.52950 * 297.50766 * 8 6 5 39 39 H 1.09002 * 109.52341 * 57.63842 * 8 6 5 40 40 H 1.09000 * 109.53844 * 62.89013 * 9 8 6 41 41 H 1.09006 * 109.54375 * 183.06699 * 9 8 6 42 42 H 1.09004 * 109.51732 * 297.07361 * 10 9 8 43 43 H 1.08996 * 109.52280 * 176.88807 * 10 9 8 44 44 H 1.09002 * 109.48298 * 182.41130 * 11 10 9 45 45 H 1.08995 * 109.48245 * 62.37798 * 11 10 9 46 46 H 0.97002 * 120.00450 * 0.02562 * 15 13 2 47 47 H 1.09008 * 110.40988 * 205.97373 * 20 18 16 48 48 H 1.09001 * 110.40790 * 328.40371 * 20 18 16 49 49 H 0.96995 * 120.00363 * 180.02562 * 25 24 22 50 50 H 1.09000 * 110.40822 * 158.36801 * 30 21 20 51 51 H 1.08992 * 110.40939 * 280.68967 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1829 2.2940 6 6 2.7091 -0.6406 3.4788 7 1 3.6084 -1.1823 3.1854 8 6 3.0341 0.2930 4.6477 9 6 3.4855 -0.5435 5.8489 10 6 2.3857 -1.5509 6.1979 11 6 2.0858 -2.4133 4.9690 12 8 1.7018 -1.5714 3.8801 13 6 2.0323 -0.7104 -1.2305 14 8 2.6530 -1.7466 -1.1215 15 7 1.7918 -0.1941 -2.4520 16 6 2.2797 -0.8851 -3.6482 17 1 2.9624 -1.7149 -3.4656 18 6 2.5148 -0.0417 -4.9029 19 1 2.4077 1.0417 -4.8501 20 6 3.4286 -0.6176 -6.0061 21 7 2.5239 -1.4246 -6.8574 22 6 2.5289 -1.5320 -8.2226 23 1 1.6732 -1.9468 -8.7347 24 6 3.6336 -1.1080 -8.9482 25 7 4.7417 -0.7710 -8.3230 26 14 3.5475 -1.0154 -10.8119 27 1 2.4722 -0.0723 -11.2115 28 1 4.8485 -0.5364 -11.3443 29 1 3.2533 -2.3631 -11.3615 30 6 1.6126 -2.0891 -5.8969 31 6 1.3174 -1.0120 -4.8309 32 1 0.2928 -0.6538 -4.7309 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3633 0.5138 0.8901 36 1 1.2538 0.6546 2.5588 37 1 2.9319 0.9513 2.0451 38 1 3.8333 0.9752 4.3579 39 1 2.1457 0.8654 4.9147 40 1 4.4022 -1.0770 5.5977 41 1 3.6664 0.1108 6.7017 42 1 1.4839 -1.0166 6.4967 43 1 2.7212 -2.1875 7.0165 44 1 1.2740 -3.1035 5.1986 45 1 2.9768 -2.9781 4.6951 46 1 1.2958 0.6349 -2.5391 47 1 3.8781 0.1883 -6.5864 48 1 4.2019 -1.2487 -5.5681 49 1 5.5136 -0.4743 -8.8300 50 1 0.6919 -2.3934 -6.3947 51 1 2.1014 -2.9512 -5.4433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317214346.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:46 Heat of formation + Delta-G solvation = -74.662078 kcal Electronic energy + Delta-G solvation = -29143.653812 eV Core-core repulsion = 25044.765441 eV Total energy + Delta-G solvation = -4098.888371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.16621 -39.70853 -38.59430 -37.38449 -34.47176 -33.99614 -33.10129 -32.49026 -31.14993 -29.98565 -27.37819 -27.14009 -25.81191 -24.75851 -24.15237 -22.53038 -21.77303 -20.71036 -20.47132 -20.03708 -19.27665 -17.41393 -17.26498 -16.88707 -16.75976 -16.26033 -15.98323 -15.43639 -15.05432 -14.89028 -14.70606 -14.61018 -14.25005 -13.85777 -13.64243 -13.22891 -13.12930 -12.95539 -12.90597 -12.74041 -12.62597 -12.19072 -12.15233 -11.79294 -11.62093 -11.51042 -11.49836 -11.42230 -11.05582 -10.97949 -10.80974 -10.68539 -10.38256 -10.21200 -10.15384 -10.09383 -9.77552 -9.73041 -9.49301 -9.17254 -8.72145 -8.32095 -6.85967 -5.78895 -3.13227 2.62979 2.71587 3.39399 3.40495 3.43877 3.45238 3.61937 4.30013 4.34344 4.39933 4.44505 4.47542 4.54359 4.60655 4.68203 4.74480 4.78637 4.93163 4.98792 5.04501 5.16826 5.17500 5.26664 5.29282 5.36309 5.38152 5.39517 5.43598 5.47215 5.49341 5.57691 5.58745 5.66373 5.84435 5.84635 5.87639 5.91886 6.16013 6.24307 6.54096 6.71510 6.73577 6.88534 6.91689 6.96649 7.35721 7.53475 7.58898 7.71708 8.21293 8.30957 9.11610 9.74359 10.51526 11.35468 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.033357 B = 0.001683 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.193595 B =16636.050918 C =16817.151265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.073 3.927 3 H 0.085 0.915 4 O -0.347 6.347 5 C 0.067 3.933 6 C 0.093 3.907 7 H 0.069 0.931 8 C -0.148 4.148 9 C -0.122 4.122 10 C -0.158 4.158 11 C 0.059 3.941 12 O -0.369 6.369 13 C 0.515 3.485 14 O -0.516 6.516 15 N -0.696 5.696 16 C 0.097 3.903 17 H 0.131 0.869 18 C -0.179 4.179 19 H 0.103 0.897 20 C 0.185 3.815 21 N -0.593 5.593 22 C -0.228 4.228 23 H 0.077 0.923 24 C -0.005 4.005 25 N -0.916 5.916 26 Si 0.914 3.086 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.283 1.283 30 C 0.155 3.845 31 C -0.182 4.182 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.051 0.949 46 H 0.398 0.602 47 H 0.091 0.909 48 H 0.026 0.974 49 H 0.255 0.745 50 H 0.051 0.949 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.743 6.001 28.833 30.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.011 3.989 3 H 0.102 0.898 4 O -0.264 6.264 5 C -0.010 4.010 6 C 0.035 3.965 7 H 0.087 0.913 8 C -0.186 4.186 9 C -0.159 4.159 10 C -0.195 4.195 11 C -0.017 4.017 12 O -0.287 6.287 13 C 0.300 3.700 14 O -0.390 6.390 15 N -0.347 5.347 16 C -0.009 4.009 17 H 0.149 0.851 18 C -0.201 4.201 19 H 0.121 0.879 20 C 0.059 3.941 21 N -0.316 5.316 22 C -0.356 4.356 23 H 0.094 0.906 24 C -0.203 4.203 25 N -0.562 5.562 26 Si 0.744 3.256 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.210 1.210 30 C 0.029 3.971 31 C -0.203 4.203 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.069 0.931 46 H 0.232 0.768 47 H 0.109 0.891 48 H 0.044 0.956 49 H 0.065 0.935 50 H 0.070 0.930 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.259 5.046 28.601 29.710 hybrid contribution -0.134 0.944 -0.767 1.223 sum -6.393 5.990 27.834 29.181 Atomic orbital electron populations 1.22218 0.93440 1.04112 1.02893 1.21878 0.95215 0.96060 0.85752 0.89765 1.88125 1.86461 1.33451 1.18393 1.22621 1.00345 0.92440 0.85558 1.22047 0.92003 0.90431 0.92004 0.91290 1.22141 1.02390 0.98545 0.95556 1.21568 0.98461 0.97990 0.97898 1.22215 0.99642 0.98894 0.98784 1.22574 1.00939 0.92268 0.85955 1.88009 1.39865 1.49993 1.50875 1.20291 0.80014 0.85714 0.83985 1.90734 1.39043 1.22943 1.86231 1.45303 1.57433 1.27038 1.04893 1.21840 1.00533 0.99086 0.79396 0.85112 1.24651 1.01825 0.96792 0.96804 0.87911 1.21068 0.89833 0.95443 0.87788 1.45169 1.35364 1.49740 1.01367 1.18953 0.99552 1.37549 0.79508 0.90564 1.24901 0.94979 1.02111 0.98274 1.69885 1.02141 1.49936 1.34203 0.86180 0.76722 0.77931 0.84798 1.21110 1.21551 1.20963 1.21117 0.94548 0.92211 0.89271 1.24362 0.94902 1.02447 0.98596 0.87934 0.90992 0.90839 0.91261 0.92262 0.91666 0.90531 0.90789 0.91582 0.91249 0.91067 0.90855 0.88802 0.93066 0.76842 0.89050 0.95621 0.93480 0.93007 0.95430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.07 0.79 3.13 -27.88 -0.09 0.70 16 3 H 0.08 0.67 7.79 -51.93 -0.40 0.26 16 4 O -0.35 -4.51 9.49 -59.69 -0.57 -5.07 16 5 C 0.07 0.61 5.41 37.16 0.20 0.81 16 6 C 0.09 0.85 2.92 -26.68 -0.08 0.77 16 7 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 8 C -0.15 -0.94 5.42 -26.59 -0.14 -1.08 16 9 C -0.12 -0.69 6.03 -26.55 -0.16 -0.85 16 10 C -0.16 -0.93 6.14 -26.60 -0.16 -1.10 16 11 C 0.06 0.47 6.84 37.20 0.25 0.72 16 12 O -0.37 -4.01 10.37 -40.07 -0.42 -4.42 16 13 C 0.52 7.65 7.18 -10.99 -0.08 7.58 16 14 O -0.52 -10.23 16.07 -14.30 -0.23 -10.46 16 15 N -0.70 -9.39 5.52 -53.81 -0.30 -9.69 16 16 C 0.10 1.67 5.97 -67.93 -0.41 1.26 16 17 H 0.13 2.59 7.40 -51.93 -0.38 2.21 16 18 C -0.18 -3.37 7.05 -89.22 -0.63 -4.00 16 19 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 20 C 0.18 4.47 5.70 -2.41 -0.01 4.45 16 21 N -0.59 -15.32 3.38 -168.87 -0.57 -15.89 16 22 C -0.23 -6.36 10.35 -15.06 -0.16 -6.52 16 23 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 24 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 25 N -0.92 -26.88 10.86 55.49 0.60 -26.27 16 26 Si 0.91 21.93 29.56 -169.99 -5.03 16.91 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 30 C 0.16 3.33 7.04 -2.41 -0.02 3.31 16 31 C -0.18 -3.26 7.06 -89.22 -0.63 -3.89 16 32 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 33 H 0.07 0.50 7.93 -51.93 -0.41 0.09 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 36 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 37 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.40 4.01 8.61 -40.82 -0.35 3.66 16 47 H 0.09 2.44 6.51 -51.92 -0.34 2.10 16 48 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 50 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 51 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 408.06 15.07 6.15 6.15 Total: -1.00 -34.72 408.06 -11.22 -45.94 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -9.02 Total: 2.00 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.85 Total: 0.81 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.26 Total: -51.85 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -1.21 Total: -19.95 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.72 -11.22 -45.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317214346.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.721 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds