Wall clock time and date at job start Tue Mar 31 2020 21:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46980 * 2 1 4 4 O 1.42903 * 109.46951 * 120.00160 * 2 1 3 5 5 C 1.42900 * 113.99556 * 269.99560 * 4 2 1 6 6 C 1.53006 * 109.46855 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.47893 * 55.02579 * 6 5 4 8 8 C 1.53087 * 109.48804 * 175.05064 * 6 5 4 9 9 C 1.53183 * 109.16109 * 177.59639 * 8 6 5 10 10 C 1.53172 * 109.03971 * 303.02659 * 9 8 6 11 11 C 1.53087 * 109.16418 * 56.97591 * 10 9 8 12 12 O 1.42900 * 109.48278 * 295.00624 * 6 5 4 13 13 C 1.50700 * 109.47026 * 240.00081 * 2 1 3 14 14 O 1.21280 * 119.99657 * 244.99849 * 13 2 1 15 15 N 1.34776 * 119.99793 * 64.99916 * 13 2 1 16 16 C 1.46507 * 119.99675 * 180.02562 * 15 13 2 17 17 H 1.08996 * 115.51601 * 350.41197 * 16 15 13 18 18 C 1.52995 * 117.44102 * 204.99982 * 16 15 13 19 19 H 1.09004 * 119.53978 * 5.71218 * 18 16 15 20 20 C 1.54388 * 118.12230 * 160.80739 * 18 16 15 21 21 N 1.48142 * 104.61497 * 87.19189 * 20 18 16 22 22 C 1.36946 * 127.83492 * 140.41524 * 21 20 18 23 23 H 1.08001 * 119.99617 * 195.57039 * 22 21 20 24 24 C 1.38802 * 120.00254 * 15.57339 * 22 21 20 25 25 N 1.31621 * 120.00301 * 9.09316 * 24 22 21 26 26 Si 1.86800 * 120.00127 * 189.09591 * 24 22 21 27 27 H 1.48505 * 109.46958 * 59.99928 * 26 24 22 28 28 H 1.48504 * 109.47240 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47349 * 300.00156 * 26 24 22 30 30 C 1.48141 * 104.32744 * 320.41185 * 21 20 18 31 31 C 1.52996 * 117.44290 * 135.76066 * 16 15 13 32 32 H 1.09007 * 119.53966 * 355.87806 * 31 16 15 33 33 H 1.08999 * 109.47419 * 60.00044 * 1 2 3 34 34 H 1.09000 * 109.46980 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.46924 * 299.99633 * 1 2 3 36 36 H 1.08998 * 109.47056 * 60.00904 * 5 4 2 37 37 H 1.08995 * 109.47958 * 300.00193 * 5 4 2 38 38 H 1.09001 * 109.52950 * 297.50766 * 8 6 5 39 39 H 1.09002 * 109.52341 * 57.63842 * 8 6 5 40 40 H 1.09000 * 109.53844 * 62.89013 * 9 8 6 41 41 H 1.09006 * 109.54375 * 183.06699 * 9 8 6 42 42 H 1.09004 * 109.51732 * 297.07361 * 10 9 8 43 43 H 1.08996 * 109.52280 * 176.88807 * 10 9 8 44 44 H 1.09002 * 109.48298 * 182.41130 * 11 10 9 45 45 H 1.08995 * 109.48245 * 62.37798 * 11 10 9 46 46 H 0.97002 * 120.00450 * 0.02562 * 15 13 2 47 47 H 1.09008 * 110.40988 * 205.97373 * 20 18 16 48 48 H 1.09001 * 110.40790 * 328.40371 * 20 18 16 49 49 H 0.96995 * 120.00363 * 180.02562 * 25 24 22 50 50 H 1.09000 * 110.40822 * 158.36801 * 30 21 20 51 51 H 1.08992 * 110.40939 * 280.68967 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1829 2.2940 6 6 2.7091 -0.6406 3.4788 7 1 3.6084 -1.1823 3.1854 8 6 3.0341 0.2930 4.6477 9 6 3.4855 -0.5435 5.8489 10 6 2.3857 -1.5509 6.1979 11 6 2.0858 -2.4133 4.9690 12 8 1.7018 -1.5714 3.8801 13 6 2.0323 -0.7104 -1.2305 14 8 2.6530 -1.7466 -1.1215 15 7 1.7918 -0.1941 -2.4520 16 6 2.2797 -0.8851 -3.6482 17 1 2.9624 -1.7149 -3.4656 18 6 2.5148 -0.0417 -4.9029 19 1 2.4077 1.0417 -4.8501 20 6 3.4286 -0.6176 -6.0061 21 7 2.5239 -1.4246 -6.8574 22 6 2.5289 -1.5320 -8.2226 23 1 1.6732 -1.9468 -8.7347 24 6 3.6336 -1.1080 -8.9482 25 7 4.7417 -0.7710 -8.3230 26 14 3.5475 -1.0154 -10.8119 27 1 2.4722 -0.0723 -11.2115 28 1 4.8485 -0.5364 -11.3443 29 1 3.2533 -2.3631 -11.3615 30 6 1.6126 -2.0891 -5.8969 31 6 1.3174 -1.0120 -4.8309 32 1 0.2928 -0.6538 -4.7309 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3633 0.5138 0.8901 36 1 1.2538 0.6546 2.5588 37 1 2.9319 0.9513 2.0451 38 1 3.8333 0.9752 4.3579 39 1 2.1457 0.8654 4.9147 40 1 4.4022 -1.0770 5.5977 41 1 3.6664 0.1108 6.7017 42 1 1.4839 -1.0166 6.4967 43 1 2.7212 -2.1875 7.0165 44 1 1.2740 -3.1035 5.1986 45 1 2.9768 -2.9781 4.6951 46 1 1.2958 0.6349 -2.5391 47 1 3.8781 0.1883 -6.5864 48 1 4.2019 -1.2487 -5.5681 49 1 5.5136 -0.4743 -8.8300 50 1 0.6919 -2.3934 -6.3947 51 1 2.1014 -2.9512 -5.4433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317214346.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:45 Heat of formation + Delta-G solvation = -97.560107 kcal Electronic energy + Delta-G solvation = -29144.646745 eV Core-core repulsion = 25044.765441 eV Total energy + Delta-G solvation = -4099.881304 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.32155 -40.50026 -39.96538 -38.40072 -36.09757 -34.55653 -34.52974 -33.45424 -32.38818 -31.37638 -28.93730 -27.99043 -27.67120 -25.63773 -24.91602 -23.42382 -23.11498 -21.97465 -21.51190 -21.10433 -20.88564 -18.88840 -18.40353 -18.19087 -17.56716 -17.19052 -16.93099 -16.69772 -16.35804 -15.93253 -15.61316 -15.44602 -15.43966 -15.10268 -14.91836 -14.65176 -14.54069 -13.80059 -13.71325 -13.62577 -13.54493 -13.34378 -13.31308 -13.21249 -12.89466 -12.76858 -12.67875 -12.47402 -12.17955 -12.15520 -12.05786 -11.97267 -11.87899 -11.67099 -11.59685 -11.27895 -11.03211 -10.85643 -10.71879 -10.50287 -10.38903 -9.73552 -8.93208 -7.91885 -5.29222 1.46707 1.47429 1.50428 1.57384 1.66942 2.48227 2.74289 2.81735 2.83694 3.28291 3.52549 3.65014 3.81181 3.82738 3.90871 3.91689 3.92636 3.96097 4.05155 4.05538 4.13173 4.17673 4.30172 4.37711 4.41378 4.49190 4.51540 4.64839 4.66788 4.73764 4.77889 4.84525 4.86573 4.89398 4.93097 4.98108 5.05464 5.11407 5.16354 5.23012 5.27520 5.37005 5.40363 5.43915 5.52425 5.63794 6.07405 6.16064 6.30836 6.53456 6.99655 7.20063 7.66558 8.45103 9.21904 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.033357 B = 0.001683 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.193595 B =16636.050918 C =16817.151265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.078 3.922 3 H 0.124 0.876 4 O -0.385 6.385 5 C 0.062 3.938 6 C 0.086 3.914 7 H 0.048 0.952 8 C -0.142 4.142 9 C -0.124 4.124 10 C -0.152 4.152 11 C 0.051 3.949 12 O -0.396 6.396 13 C 0.511 3.489 14 O -0.575 6.575 15 N -0.676 5.676 16 C 0.114 3.886 17 H 0.099 0.901 18 C -0.174 4.174 19 H 0.133 0.867 20 C 0.187 3.813 21 N -0.616 5.616 22 C -0.243 4.243 23 H 0.083 0.917 24 C -0.063 4.063 25 N -0.949 5.949 26 Si 0.984 3.016 27 H -0.274 1.274 28 H -0.294 1.294 29 H -0.276 1.276 30 C 0.147 3.853 31 C -0.163 4.163 32 H 0.140 0.860 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.044 0.956 46 H 0.421 0.579 47 H 0.061 0.939 48 H -0.008 1.008 49 H 0.250 0.750 50 H 0.064 0.936 51 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.885 8.357 30.159 32.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 H 0.141 0.859 4 O -0.304 6.304 5 C -0.014 4.014 6 C 0.029 3.971 7 H 0.066 0.934 8 C -0.179 4.179 9 C -0.162 4.162 10 C -0.190 4.190 11 C -0.025 4.025 12 O -0.316 6.316 13 C 0.298 3.702 14 O -0.453 6.453 15 N -0.328 5.328 16 C 0.007 3.993 17 H 0.116 0.884 18 C -0.195 4.195 19 H 0.150 0.850 20 C 0.061 3.939 21 N -0.340 5.340 22 C -0.372 4.372 23 H 0.101 0.899 24 C -0.256 4.256 25 N -0.596 5.596 26 Si 0.811 3.189 27 H -0.199 1.199 28 H -0.220 1.220 29 H -0.202 1.202 30 C 0.021 3.979 31 C -0.184 4.184 32 H 0.157 0.843 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.062 0.938 46 H 0.259 0.741 47 H 0.080 0.920 48 H 0.010 0.990 49 H 0.059 0.941 50 H 0.083 0.917 51 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -8.454 7.436 29.957 32.003 hybrid contribution 0.565 0.104 -1.123 1.261 sum -7.889 7.539 28.834 30.830 Atomic orbital electron populations 1.22223 0.91470 1.03260 1.05134 1.21997 0.96441 0.96737 0.83156 0.85863 1.88090 1.86906 1.35688 1.19733 1.22869 1.01854 0.92364 0.84298 1.22190 0.90897 0.90693 0.93350 0.93425 1.22107 1.03179 0.98138 0.94499 1.21617 0.98112 0.98133 0.98289 1.22172 0.99895 0.98866 0.98025 1.22736 1.00880 0.92581 0.86330 1.87959 1.40854 1.50786 1.51969 1.21211 0.78673 0.85040 0.85234 1.90716 1.41762 1.25758 1.87061 1.45050 1.56963 1.27445 1.03348 1.21340 0.99671 0.97937 0.80400 0.88353 1.24338 1.00744 0.98221 0.96197 0.84953 1.20814 0.90229 0.93946 0.88891 1.45478 1.36210 1.50815 1.01544 1.19375 0.99806 1.37085 0.80921 0.89911 1.25785 0.94648 1.02253 1.02948 1.70095 1.02704 1.51124 1.35701 0.85087 0.76542 0.78167 0.79108 1.19932 1.22004 1.20210 1.21253 0.94074 0.92841 0.89705 1.24273 0.96388 1.00253 0.97513 0.84269 0.88567 0.93225 0.89190 0.90599 0.89493 0.89111 0.90048 0.91989 0.89600 0.90878 0.89462 0.88272 0.93797 0.74123 0.92029 0.98975 0.94051 0.91726 0.96784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.48 71.98 0.68 -1.65 16 2 C 0.08 1.50 3.13 29.85 0.09 1.59 16 3 H 0.12 1.41 7.79 -2.39 -0.02 1.39 16 4 O -0.39 -9.66 9.49 -125.59 -1.19 -10.85 16 5 C 0.06 1.01 5.41 71.98 0.39 1.40 16 6 C 0.09 1.53 2.92 30.63 0.09 1.62 16 7 H 0.05 1.00 8.14 -2.38 -0.02 0.99 16 8 C -0.14 -1.52 5.42 30.68 0.17 -1.36 16 9 C -0.12 -1.21 6.03 30.71 0.19 -1.03 16 10 C -0.15 -1.61 6.14 30.68 0.19 -1.42 16 11 C 0.05 0.81 6.84 72.01 0.49 1.30 16 12 O -0.40 -8.59 10.37 -144.36 -1.50 -10.09 16 13 C 0.51 14.59 7.18 87.66 0.63 15.22 16 14 O -0.58 -23.39 16.07 15.96 0.26 -23.14 16 15 N -0.68 -16.63 5.52 -442.54 -2.44 -19.07 16 16 C 0.11 3.81 5.97 44.99 0.27 4.08 16 17 H 0.10 4.05 7.40 -2.39 -0.02 4.03 16 18 C -0.17 -6.36 7.05 -9.89 -0.07 -6.43 16 19 H 0.13 4.09 8.14 -2.38 -0.02 4.07 16 20 C 0.19 9.37 5.70 86.53 0.49 9.87 16 21 N -0.62 -32.46 3.38 -688.17 -2.33 -34.78 16 22 C -0.24 -13.77 10.35 84.03 0.87 -12.90 16 23 H 0.08 4.44 7.85 -2.91 -0.02 4.42 16 24 C -0.06 -3.58 5.40 84.86 0.46 -3.12 16 25 N -0.95 -57.60 10.86 21.65 0.24 -57.36 16 26 Si 0.98 45.53 29.56 68.60 2.03 47.56 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 28 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 29 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 30 C 0.15 6.31 7.04 86.54 0.61 6.91 16 31 C -0.16 -5.55 7.06 -9.89 -0.07 -5.62 16 32 H 0.14 3.80 8.14 -2.38 -0.02 3.78 16 33 H 0.10 0.89 7.93 -2.39 -0.02 0.87 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 0.94 7.87 -2.38 -0.02 0.92 16 36 H 0.08 0.96 7.87 -2.39 -0.02 0.94 16 37 H 0.09 0.99 8.08 -2.39 -0.02 0.97 16 38 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.04 0.72 8.14 -2.39 -0.02 0.71 16 46 H 0.42 6.67 8.61 -92.71 -0.80 5.87 16 47 H 0.06 3.43 6.51 -2.38 -0.02 3.41 16 48 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 49 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 50 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 51 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -80.51 408.06 0.65 -79.87 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.11 Total: 19.39 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 5.48 Total: 8.47 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -4.54 Total: -111.21 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -2.43 Total: -44.08 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -80.51 0.65 -79.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317214346.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.693 kcal (2) G-P(sol) polarization free energy of solvation -80.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds