Wall clock time and date at job start Tue Mar 31 2020 20:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47378 * 119.99728 * 2 1 3 5 5 C 1.52991 * 109.47358 * 185.00197 * 4 2 1 6 6 H 1.08999 * 110.80391 * 305.69949 * 5 4 2 7 7 C 1.54811 * 110.90789 * 182.07549 * 5 4 2 8 8 C 1.54101 * 104.18956 * 220.92197 * 7 5 4 9 9 O 1.43748 * 107.28984 * 357.96576 * 8 7 5 10 10 C 1.44414 * 107.00297 * 26.49002 * 9 8 7 11 11 N 1.46491 * 109.47378 * 239.99823 * 2 1 3 12 12 C 1.34781 * 119.99807 * 84.72369 * 11 2 1 13 13 O 1.21352 * 120.00054 * 0.02562 * 12 11 2 14 14 C 1.49457 * 120.00040 * 180.02562 * 12 11 2 15 15 O 1.21352 * 119.99593 * 6.73861 * 14 12 11 16 16 N 1.34768 * 120.00026 * 186.74927 * 14 12 11 17 17 C 1.46930 * 120.63193 * 8.41554 * 16 14 12 18 18 C 1.53627 * 108.53916 * 126.37474 * 17 16 14 19 19 C 1.53037 * 109.24537 * 54.85812 * 18 17 16 20 20 C 1.50701 * 109.46182 * 178.48798 * 19 18 17 21 21 H 1.08001 * 119.99730 * 120.07032 * 20 19 18 22 22 C 1.37876 * 120.00079 * 300.06781 * 20 19 18 23 23 N 1.31510 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99940 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46953 * 90.00565 * 24 22 20 26 26 H 1.48499 * 109.47157 * 210.00020 * 24 22 20 27 27 H 1.48496 * 109.47151 * 330.00309 * 24 22 20 28 28 C 1.53039 * 109.53963 * 298.51019 * 19 18 17 29 29 C 1.46923 * 120.62945 * 188.70372 * 16 14 12 30 30 H 1.08994 * 109.47177 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47096 * 300.00474 * 1 2 3 32 32 H 1.09000 * 109.47113 * 60.00063 * 1 2 3 33 33 H 1.09007 * 109.47130 * 305.00494 * 4 2 1 34 34 H 1.09000 * 109.47052 * 64.99781 * 4 2 1 35 35 H 1.08995 * 110.48699 * 339.59357 * 7 5 4 36 36 H 1.09001 * 110.48864 * 102.11199 * 7 5 4 37 37 H 1.08990 * 109.88179 * 117.39262 * 8 7 5 38 38 H 1.09001 * 109.88056 * 238.54669 * 8 7 5 39 39 H 1.09003 * 110.65507 * 201.47782 * 10 9 8 40 40 H 1.09000 * 110.59963 * 78.46923 * 10 9 8 41 41 H 0.97002 * 120.00677 * 265.00352 * 11 2 1 42 42 H 1.08999 * 109.58926 * 246.20406 * 17 16 14 43 43 H 1.08996 * 109.58697 * 6.63328 * 17 16 14 44 44 H 1.09003 * 109.63632 * 294.86496 * 18 17 16 45 45 H 1.09002 * 109.42635 * 174.72829 * 18 17 16 46 46 H 1.09005 * 109.45725 * 58.52595 * 19 18 17 47 47 H 0.96998 * 120.00414 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.49851 * 301.41559 * 28 19 18 49 49 H 1.08996 * 109.52805 * 181.32795 * 28 19 18 50 50 H 1.08994 * 109.58875 * 353.36913 * 29 16 14 51 51 H 1.09010 * 109.58794 * 113.79466 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.6132 1.3137 6 1 4.0179 -0.9756 0.3910 7 6 4.1214 -1.3772 2.5397 8 6 5.2261 -0.4546 3.0901 9 8 5.3050 0.6850 2.2176 10 6 4.0041 0.8432 1.6108 11 7 2.0183 -0.6906 -1.1961 12 6 2.1418 -0.0196 -2.3584 13 8 1.8488 1.1567 -2.4141 14 6 2.6395 -0.7242 -3.5789 15 8 2.8160 -1.9247 -3.5567 16 7 2.8924 -0.0265 -4.7038 17 6 2.8619 1.4425 -4.6964 18 6 4.1917 1.9615 -5.2641 19 6 4.4255 1.3450 -6.6452 20 6 5.7107 1.8796 -7.2227 21 1 6.5132 1.2016 -7.4732 22 6 5.8620 3.2341 -7.4311 23 7 4.8850 4.0596 -7.1256 24 14 7.4554 3.8967 -8.1462 25 1 7.3563 3.9318 -9.6275 26 1 7.6948 5.2697 -7.6335 27 1 8.5817 3.0155 -7.7462 28 6 4.5183 -0.1772 -6.5172 29 6 3.1977 -0.7204 -5.9623 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6053 -0.2617 2.1370 34 1 1.7516 -1.7714 1.2057 35 1 3.3398 -1.5233 3.2853 36 1 4.5397 -2.3362 2.2339 37 1 4.9708 -0.1318 4.0993 38 1 6.1800 -0.9822 3.0978 39 1 4.0778 1.4178 0.6875 40 1 3.3120 1.3187 2.3058 41 1 2.2490 -1.6318 -1.1526 42 1 2.0357 1.7939 -5.3143 43 1 2.7347 1.8002 -3.6747 44 1 5.0082 1.6822 -4.5981 45 1 4.1490 3.0470 -5.3527 46 1 3.5963 1.6041 -7.3036 47 1 4.9916 5.0126 -7.2719 48 1 5.3316 -0.4364 -5.8394 49 1 4.7083 -0.6143 -7.4974 50 1 3.2920 -1.7902 -5.7762 51 1 2.3981 -0.5417 -6.6814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323893917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:23 Heat of formation + Delta-G solvation = -118.929238 kcal Electronic energy + Delta-G solvation = -30654.309308 eV Core-core repulsion = 26553.501369 eV Total energy + Delta-G solvation = -4100.807939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.79246 -39.80490 -38.61074 -37.01822 -36.45874 -33.62543 -33.13060 -31.22528 -31.19529 -30.02254 -29.63440 -26.67465 -26.39143 -24.74826 -23.20746 -22.53627 -22.28819 -21.21080 -20.59179 -20.30424 -18.93111 -17.37538 -16.93150 -16.73881 -16.36908 -16.12382 -15.92918 -15.61226 -15.22072 -14.83199 -14.51950 -14.29463 -14.05637 -13.85366 -13.65451 -13.26584 -13.16635 -13.06459 -12.84335 -12.66313 -12.50700 -12.32024 -12.29772 -11.86163 -11.73672 -11.64683 -11.36606 -11.15989 -11.02665 -10.95831 -10.87595 -10.80371 -10.59365 -10.36336 -10.06066 -9.94019 -9.69242 -9.37394 -9.21125 -9.16373 -8.59016 -8.33708 -8.06364 -5.99203 -4.05746 1.62422 2.51363 3.30769 3.37893 3.40942 3.41712 3.62812 3.75369 4.07954 4.31580 4.43815 4.48290 4.52708 4.66146 4.73785 4.80666 4.95596 5.05296 5.18219 5.28618 5.30485 5.36726 5.38773 5.42387 5.49625 5.52667 5.64242 5.65844 5.74038 5.84712 5.87645 5.91170 5.95775 6.08312 6.16694 6.26030 6.44380 6.60114 6.60723 6.70925 6.79356 6.99303 7.12731 7.17497 7.31930 7.67858 7.77992 7.90170 7.96410 8.08738 8.26006 8.43416 8.97439 9.59162 11.06181 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012018 B = 0.002879 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.314978 B = 9723.865552 C =10875.469631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 H 0.094 0.906 4 C -0.116 4.116 5 C -0.126 4.126 6 H 0.090 0.910 7 C -0.152 4.152 8 C 0.046 3.954 9 O -0.377 6.377 10 C 0.050 3.950 11 N -0.700 5.700 12 C 0.511 3.489 13 O -0.504 6.504 14 C 0.498 3.502 15 O -0.546 6.546 16 N -0.561 5.561 17 C 0.065 3.935 18 C -0.122 4.122 19 C 0.046 3.954 20 C -0.513 4.513 21 H 0.054 0.946 22 C 0.061 3.939 23 N -0.890 5.890 24 Si 0.890 3.110 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.275 1.275 28 C -0.122 4.122 29 C 0.107 3.893 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.410 0.590 42 H 0.061 0.939 43 H 0.123 0.877 44 H 0.036 0.964 45 H 0.105 0.895 46 H 0.027 0.973 47 H 0.260 0.740 48 H 0.053 0.947 49 H 0.062 0.938 50 H 0.080 0.920 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.278 -10.249 19.816 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 H 0.112 0.888 4 C -0.154 4.154 5 C -0.144 4.144 6 H 0.109 0.891 7 C -0.190 4.190 8 C -0.031 4.031 9 O -0.296 6.296 10 C -0.027 4.027 11 N -0.355 5.355 12 C 0.293 3.707 13 O -0.380 6.380 14 C 0.280 3.720 15 O -0.425 6.425 16 N -0.293 5.293 17 C -0.055 4.055 18 C -0.161 4.161 19 C 0.028 3.972 20 C -0.551 4.551 21 H 0.073 0.927 22 C -0.140 4.140 23 N -0.529 5.529 24 Si 0.719 3.281 25 H -0.208 1.208 26 H -0.212 1.212 27 H -0.200 1.200 28 C -0.160 4.160 29 C -0.015 4.015 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.246 0.754 42 H 0.080 0.920 43 H 0.140 0.860 44 H 0.055 0.945 45 H 0.123 0.877 46 H 0.045 0.955 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.099 0.901 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.243 -9.672 19.736 23.473 hybrid contribution 0.780 -0.129 -0.448 0.909 sum -7.463 -9.801 19.288 22.887 Atomic orbital electron populations 1.22188 0.94711 1.02419 1.02987 1.21111 0.94396 0.97869 0.83313 0.88775 1.21891 0.94233 1.01750 0.97511 1.22806 0.95901 0.96252 0.99479 0.89118 1.23001 0.98627 0.99741 0.97586 1.23145 0.99431 0.86893 0.93673 1.88923 1.31419 1.48191 1.61039 1.23693 0.84741 0.96081 0.98186 1.45892 1.66067 1.14850 1.08650 1.20400 0.78743 0.86883 0.84688 1.90554 1.48132 1.15333 1.83964 1.19915 0.80284 0.87106 0.84652 1.90691 1.53520 1.14436 1.83877 1.48224 1.63598 1.09215 1.08226 1.23199 1.00531 0.76047 1.05719 1.22102 0.92205 1.04277 0.97477 1.18675 0.97329 0.88150 0.93068 1.21187 1.00487 0.92131 1.41307 0.92741 1.24962 0.96417 0.97099 0.95498 1.69840 1.31712 1.03175 1.48150 0.86618 0.84016 0.78249 0.79256 1.20759 1.21238 1.19993 1.22008 0.94271 1.00152 0.99588 1.21889 0.98909 0.96972 0.83702 0.92262 0.91382 0.91613 0.89728 0.90543 0.90519 0.90335 0.92516 0.89952 0.88668 0.91994 0.75372 0.92023 0.85997 0.94483 0.87673 0.95459 0.92962 0.92840 0.91921 0.90135 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.48 37.15 0.35 -0.95 16 2 C 0.14 1.18 2.51 -67.94 -0.17 1.01 16 3 H 0.09 0.94 6.81 -51.92 -0.35 0.59 16 4 C -0.12 -0.70 4.15 -26.73 -0.11 -0.81 16 5 C -0.13 -0.98 3.04 -88.62 -0.27 -1.25 16 6 H 0.09 0.86 7.68 -51.93 -0.40 0.46 16 7 C -0.15 -0.99 6.60 -25.20 -0.17 -1.16 16 8 C 0.05 0.37 7.70 37.73 0.29 0.66 16 9 O -0.38 -4.40 11.52 -35.23 -0.41 -4.81 16 10 C 0.05 0.47 6.45 38.21 0.25 0.71 16 11 N -0.70 -7.66 4.48 -54.24 -0.24 -7.90 16 12 C 0.51 7.63 7.70 -11.58 -0.09 7.54 16 13 O -0.50 -8.43 12.84 5.50 0.07 -8.36 16 14 C 0.50 8.66 7.73 -11.59 -0.09 8.57 16 15 O -0.55 -9.95 15.93 5.49 0.09 -9.86 16 16 N -0.56 -10.47 2.97 -173.00 -0.51 -10.99 16 17 C 0.07 1.30 6.01 -3.48 -0.02 1.28 16 18 C -0.12 -2.84 5.17 -26.39 -0.14 -2.98 16 19 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 20 C -0.51 -13.89 8.56 -34.44 -0.29 -14.18 16 21 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 22 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 23 N -0.89 -24.95 11.30 55.43 0.63 -24.33 16 24 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 28 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 29 C 0.11 1.95 6.44 -3.71 -0.02 1.92 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.40 8.05 -51.93 -0.42 -0.02 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.38 7.86 -51.93 -0.41 -0.03 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 1.01 8.00 -51.93 -0.42 0.59 16 40 H 0.06 0.49 7.98 -51.93 -0.41 0.07 16 41 H 0.41 4.06 8.09 -40.82 -0.33 3.73 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.12 2.38 4.30 -54.85 -0.24 2.14 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.11 2.73 6.03 -51.93 -0.31 2.41 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 50 H 0.08 1.40 7.01 -51.93 -0.36 1.04 16 51 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 LS Contribution 397.82 15.07 6.00 6.00 Total: -1.00 -30.68 397.82 -9.00 -39.68 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.69 Total: 4.17 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -0.91 Total: 0.22 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.13 Total: -43.21 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.25 Total: -23.03 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.68 -9.00 -39.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323893917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.254 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds