Wall clock time and date at job start Tue Mar 31 2020 20:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47378 * 119.99728 * 2 1 3 5 5 C 1.52991 * 109.47358 * 185.00197 * 4 2 1 6 6 H 1.08999 * 110.80391 * 305.69949 * 5 4 2 7 7 C 1.54811 * 110.90789 * 182.07549 * 5 4 2 8 8 C 1.54101 * 104.18956 * 220.92197 * 7 5 4 9 9 O 1.43748 * 107.28984 * 357.96576 * 8 7 5 10 10 C 1.44414 * 107.00297 * 26.49002 * 9 8 7 11 11 N 1.46491 * 109.47378 * 239.99823 * 2 1 3 12 12 C 1.34781 * 119.99807 * 84.72369 * 11 2 1 13 13 O 1.21352 * 120.00054 * 0.02562 * 12 11 2 14 14 C 1.49457 * 120.00040 * 180.02562 * 12 11 2 15 15 O 1.21352 * 119.99593 * 6.73861 * 14 12 11 16 16 N 1.34768 * 120.00026 * 186.74927 * 14 12 11 17 17 C 1.46930 * 120.63193 * 8.41554 * 16 14 12 18 18 C 1.53627 * 108.53916 * 126.37474 * 17 16 14 19 19 C 1.53037 * 109.24537 * 54.85812 * 18 17 16 20 20 C 1.50701 * 109.46182 * 178.48798 * 19 18 17 21 21 H 1.08001 * 119.99730 * 120.07032 * 20 19 18 22 22 C 1.37876 * 120.00079 * 300.06781 * 20 19 18 23 23 N 1.31510 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99940 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46953 * 90.00565 * 24 22 20 26 26 H 1.48499 * 109.47157 * 210.00020 * 24 22 20 27 27 H 1.48496 * 109.47151 * 330.00309 * 24 22 20 28 28 C 1.53039 * 109.53963 * 298.51019 * 19 18 17 29 29 C 1.46923 * 120.62945 * 188.70372 * 16 14 12 30 30 H 1.08994 * 109.47177 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47096 * 300.00474 * 1 2 3 32 32 H 1.09000 * 109.47113 * 60.00063 * 1 2 3 33 33 H 1.09007 * 109.47130 * 305.00494 * 4 2 1 34 34 H 1.09000 * 109.47052 * 64.99781 * 4 2 1 35 35 H 1.08995 * 110.48699 * 339.59357 * 7 5 4 36 36 H 1.09001 * 110.48864 * 102.11199 * 7 5 4 37 37 H 1.08990 * 109.88179 * 117.39262 * 8 7 5 38 38 H 1.09001 * 109.88056 * 238.54669 * 8 7 5 39 39 H 1.09003 * 110.65507 * 201.47782 * 10 9 8 40 40 H 1.09000 * 110.59963 * 78.46923 * 10 9 8 41 41 H 0.97002 * 120.00677 * 265.00352 * 11 2 1 42 42 H 1.08999 * 109.58926 * 246.20406 * 17 16 14 43 43 H 1.08996 * 109.58697 * 6.63328 * 17 16 14 44 44 H 1.09003 * 109.63632 * 294.86496 * 18 17 16 45 45 H 1.09002 * 109.42635 * 174.72829 * 18 17 16 46 46 H 1.09005 * 109.45725 * 58.52595 * 19 18 17 47 47 H 0.96998 * 120.00414 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.49851 * 301.41559 * 28 19 18 49 49 H 1.08996 * 109.52805 * 181.32795 * 28 19 18 50 50 H 1.08994 * 109.58875 * 353.36913 * 29 16 14 51 51 H 1.09010 * 109.58794 * 113.79466 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.6132 1.3137 6 1 4.0179 -0.9756 0.3910 7 6 4.1214 -1.3772 2.5397 8 6 5.2261 -0.4546 3.0901 9 8 5.3050 0.6850 2.2176 10 6 4.0041 0.8432 1.6108 11 7 2.0183 -0.6906 -1.1961 12 6 2.1418 -0.0196 -2.3584 13 8 1.8488 1.1567 -2.4141 14 6 2.6395 -0.7242 -3.5789 15 8 2.8160 -1.9247 -3.5567 16 7 2.8924 -0.0265 -4.7038 17 6 2.8619 1.4425 -4.6964 18 6 4.1917 1.9615 -5.2641 19 6 4.4255 1.3450 -6.6452 20 6 5.7107 1.8796 -7.2227 21 1 6.5132 1.2016 -7.4732 22 6 5.8620 3.2341 -7.4311 23 7 4.8850 4.0596 -7.1256 24 14 7.4554 3.8967 -8.1462 25 1 7.3563 3.9318 -9.6275 26 1 7.6948 5.2697 -7.6335 27 1 8.5817 3.0155 -7.7462 28 6 4.5183 -0.1772 -6.5172 29 6 3.1977 -0.7204 -5.9623 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6053 -0.2617 2.1370 34 1 1.7516 -1.7714 1.2057 35 1 3.3398 -1.5233 3.2853 36 1 4.5397 -2.3362 2.2339 37 1 4.9708 -0.1318 4.0993 38 1 6.1800 -0.9822 3.0978 39 1 4.0778 1.4178 0.6875 40 1 3.3120 1.3187 2.3058 41 1 2.2490 -1.6318 -1.1526 42 1 2.0357 1.7939 -5.3143 43 1 2.7347 1.8002 -3.6747 44 1 5.0082 1.6822 -4.5981 45 1 4.1490 3.0470 -5.3527 46 1 3.5963 1.6041 -7.3036 47 1 4.9916 5.0126 -7.2719 48 1 5.3316 -0.4364 -5.8394 49 1 4.7083 -0.6143 -7.4974 50 1 3.2920 -1.7902 -5.7762 51 1 2.3981 -0.5417 -6.6814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323893917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:22 Heat of formation + Delta-G solvation = -138.495290 kcal Electronic energy + Delta-G solvation = -30655.157756 eV Core-core repulsion = 26553.501369 eV Total energy + Delta-G solvation = -4101.656387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.04112 -40.60790 -39.83458 -38.57091 -37.44114 -35.37335 -34.04841 -33.03360 -31.99881 -31.73116 -30.25930 -28.38935 -27.07252 -26.23901 -24.33300 -24.01072 -23.58851 -22.06610 -21.63353 -21.28856 -20.49507 -18.75882 -18.38228 -18.06687 -17.46326 -17.27042 -16.84586 -16.76846 -16.50798 -16.11669 -15.90537 -15.34261 -15.28748 -14.96324 -14.77059 -14.64097 -14.46197 -14.27697 -14.06026 -13.90528 -13.77690 -13.42412 -13.19852 -13.07738 -12.84017 -12.80747 -12.51087 -12.45251 -12.33723 -12.32657 -12.15944 -11.98091 -11.81261 -11.62403 -11.51641 -11.39869 -11.03843 -11.01367 -10.64329 -10.46391 -10.37103 -10.00965 -9.68512 -8.08055 -6.22081 0.32960 1.32343 1.40723 1.42333 1.51745 2.10478 2.43416 2.49500 2.98533 3.18337 3.29328 3.48812 3.74219 3.87290 4.02298 4.09939 4.17690 4.20004 4.26441 4.30275 4.31548 4.43754 4.49051 4.54002 4.60294 4.66833 4.72655 4.77384 4.83464 4.84285 4.88116 4.90318 4.94838 4.99592 5.06670 5.13558 5.16878 5.17987 5.29960 5.33087 5.37704 5.39251 5.51698 5.62136 5.94203 5.95606 6.03898 6.09815 6.29036 6.37629 6.69974 6.87946 6.94763 7.45746 8.95503 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012018 B = 0.002879 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.314978 B = 9723.865552 C =10875.469631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 H 0.079 0.921 4 C -0.104 4.104 5 C -0.123 4.123 6 H 0.069 0.931 7 C -0.143 4.143 8 C 0.036 3.964 9 O -0.414 6.414 10 C 0.044 3.956 11 N -0.679 5.679 12 C 0.511 3.489 13 O -0.527 6.527 14 C 0.498 3.502 15 O -0.551 6.551 16 N -0.571 5.571 17 C 0.083 3.917 18 C -0.112 4.112 19 C 0.044 3.956 20 C -0.535 4.535 21 H 0.050 0.950 22 C 0.014 3.986 23 N -0.913 5.913 24 Si 0.951 3.049 25 H -0.275 1.275 26 H -0.284 1.284 27 H -0.272 1.272 28 C -0.113 4.113 29 C 0.112 3.888 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.418 0.582 42 H 0.059 0.941 43 H 0.130 0.870 44 H 0.023 0.977 45 H 0.076 0.924 46 H 0.004 0.996 47 H 0.261 0.739 48 H 0.043 0.957 49 H 0.072 0.928 50 H 0.094 0.906 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.139 -11.919 21.745 26.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 H 0.097 0.903 4 C -0.141 4.141 5 C -0.142 4.142 6 H 0.088 0.912 7 C -0.181 4.181 8 C -0.040 4.040 9 O -0.334 6.334 10 C -0.032 4.032 11 N -0.333 5.333 12 C 0.292 3.708 13 O -0.405 6.405 14 C 0.281 3.719 15 O -0.431 6.431 16 N -0.303 5.303 17 C -0.038 4.038 18 C -0.151 4.151 19 C 0.025 3.975 20 C -0.573 4.573 21 H 0.068 0.932 22 C -0.184 4.184 23 N -0.553 5.553 24 Si 0.777 3.223 25 H -0.201 1.201 26 H -0.209 1.209 27 H -0.197 1.197 28 C -0.151 4.151 29 C -0.010 4.010 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.255 0.745 42 H 0.078 0.922 43 H 0.147 0.853 44 H 0.041 0.959 45 H 0.094 0.906 46 H 0.022 0.978 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.090 0.910 50 H 0.112 0.888 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.111 -11.392 21.698 26.146 hybrid contribution 1.069 0.358 -0.988 1.500 sum -8.041 -11.034 20.710 24.805 Atomic orbital electron populations 1.22152 0.93582 1.03220 1.02857 1.21363 0.95192 0.97329 0.83185 0.90326 1.21874 0.92660 1.02839 0.96767 1.22746 0.97132 0.95108 0.99240 0.91249 1.22983 0.98633 0.99162 0.97291 1.23368 1.00358 0.86407 0.93914 1.88878 1.32766 1.49744 1.61977 1.23776 0.84549 0.97251 0.97657 1.45908 1.64206 1.15083 1.08075 1.20018 0.79114 0.86607 0.85040 1.90529 1.49678 1.16105 1.84184 1.20345 0.79510 0.87093 0.84951 1.90678 1.53609 1.14733 1.84083 1.48202 1.64522 1.08577 1.08999 1.22916 0.98148 0.77002 1.05763 1.21872 0.93762 1.02493 0.96981 1.18639 0.95340 0.90735 0.92774 1.21550 1.01472 0.92553 1.41701 0.93170 1.25696 0.99392 0.97439 0.95914 1.69970 1.33263 1.03295 1.48732 0.85662 0.80397 0.77530 0.78687 1.20076 1.20947 1.19663 1.21850 0.95536 0.97564 1.00140 1.21845 0.97794 0.97419 0.83917 0.90949 0.89087 0.94214 0.87157 0.88512 0.88009 0.89795 0.91105 0.89911 0.90990 0.90166 0.74474 0.92239 0.85315 0.95857 0.90580 0.97818 0.92968 0.93823 0.90977 0.88756 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.48 71.98 0.68 -1.43 16 2 C 0.13 2.00 2.51 44.99 0.11 2.12 16 3 H 0.08 1.50 6.81 -2.38 -0.02 1.48 16 4 C -0.10 -0.90 4.15 30.59 0.13 -0.77 16 5 C -0.12 -1.69 3.04 -9.50 -0.03 -1.72 16 6 H 0.07 1.24 7.68 -2.39 -0.02 1.23 16 7 C -0.14 -1.47 6.60 31.59 0.21 -1.26 16 8 C 0.04 0.53 7.70 72.35 0.56 1.09 16 9 O -0.41 -9.61 11.52 -148.98 -1.72 -11.32 16 10 C 0.04 0.80 6.45 72.66 0.47 1.27 16 11 N -0.68 -13.88 4.48 -443.86 -1.99 -15.87 16 12 C 0.51 15.01 7.70 87.27 0.67 15.68 16 13 O -0.53 -17.69 12.84 -3.25 -0.04 -17.73 16 14 C 0.50 16.95 7.73 87.27 0.67 17.62 16 15 O -0.55 -19.33 15.93 -3.25 -0.05 -19.39 16 16 N -0.57 -21.23 2.97 -819.62 -2.43 -23.66 16 17 C 0.08 3.35 6.01 86.51 0.52 3.87 16 18 C -0.11 -5.43 5.17 30.82 0.16 -5.27 16 19 C 0.04 2.18 2.06 -11.51 -0.02 2.16 16 20 C -0.53 -29.60 8.56 25.60 0.22 -29.38 16 21 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 22 C 0.01 0.80 5.30 84.66 0.45 1.25 16 23 N -0.91 -52.52 11.30 21.45 0.24 -52.27 16 24 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 27 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 28 C -0.11 -4.67 5.30 30.67 0.16 -4.51 16 29 C 0.11 4.00 6.44 86.37 0.56 4.55 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 0.51 8.05 -2.38 -0.02 0.49 16 34 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.10 0.56 7.86 -2.39 -0.02 0.54 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.60 8.00 -2.39 -0.02 1.58 16 40 H 0.08 1.13 7.98 -2.39 -0.02 1.11 16 41 H 0.42 7.40 8.09 -92.71 -0.75 6.65 16 42 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.13 5.14 4.30 -48.54 -0.21 4.93 16 44 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 4.13 6.03 -2.39 -0.01 4.12 16 46 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 47 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 48 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 50 H 0.09 3.14 7.01 -2.39 -0.02 3.12 16 51 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 Total: -1.00 -68.00 397.82 1.53 -66.47 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -0.03 Total: 22.47 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 5.52 Total: 5.27 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -4.18 Total: -91.80 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -1.81 Total: -48.44 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -68.00 1.53 -66.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323893917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.023 kcal (2) G-P(sol) polarization free energy of solvation -68.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds