Wall clock time and date at job start Tue Mar 31 2020 20:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47170 * 2 1 4 4 C 1.53005 * 109.47034 * 240.00827 * 2 1 3 5 5 C 1.52999 * 109.46968 * 175.00094 * 4 2 1 6 6 H 1.09003 * 110.45879 * 54.29586 * 5 4 2 7 7 C 1.54511 * 110.50985 * 176.90045 * 5 4 2 8 8 C 1.54481 * 104.06191 * 118.64135 * 7 5 4 9 9 O 1.44423 * 104.80367 * 23.98161 * 8 7 5 10 10 C 1.44648 * 105.36691 * 319.56500 * 9 8 7 11 11 N 1.46496 * 109.47397 * 120.00373 * 2 1 3 12 12 C 1.34773 * 120.00288 * 275.00268 * 11 2 1 13 13 O 1.21352 * 119.99635 * 359.97438 * 12 11 2 14 14 C 1.49445 * 120.00063 * 179.97438 * 12 11 2 15 15 O 1.21349 * 120.00388 * 353.22750 * 14 12 11 16 16 N 1.34782 * 120.00241 * 173.22905 * 14 12 11 17 17 C 1.46934 * 120.62503 * 351.35911 * 16 14 12 18 18 C 1.53190 * 108.77266 * 233.58640 * 17 16 14 19 19 C 1.53041 * 109.31542 * 305.36717 * 18 17 16 20 20 C 1.50696 * 109.45881 * 181.38891 * 19 18 17 21 21 H 1.07993 * 120.00360 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99793 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99957 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00225 * 179.72104 * 22 20 19 25 25 H 1.48503 * 109.46878 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46956 * 120.00117 * 24 22 20 27 27 H 1.48497 * 109.47366 * 240.00300 * 24 22 20 28 28 C 1.53040 * 109.53885 * 61.36488 * 19 18 17 29 29 C 1.46923 * 120.63598 * 171.33709 * 16 14 12 30 30 H 1.09004 * 109.46809 * 299.99559 * 1 2 3 31 31 H 1.09007 * 109.47119 * 59.99322 * 1 2 3 32 32 H 1.08996 * 109.46909 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46472 * 294.99491 * 4 2 1 34 34 H 1.09001 * 109.47121 * 54.99593 * 4 2 1 35 35 H 1.08996 * 110.51067 * 237.28994 * 7 5 4 36 36 H 1.09000 * 110.51321 * 359.97438 * 7 5 4 37 37 H 1.08997 * 110.37241 * 142.81093 * 8 7 5 38 38 H 1.08996 * 110.37242 * 265.03737 * 8 7 5 39 39 H 1.09004 * 110.33821 * 281.59012 * 10 9 8 40 40 H 1.09002 * 110.50750 * 159.18771 * 10 9 8 41 41 H 0.97000 * 119.99814 * 94.99364 * 11 2 1 42 42 H 1.09000 * 109.58279 * 113.80211 * 17 16 14 43 43 H 1.08993 * 109.58548 * 353.37494 * 17 16 14 44 44 H 1.09002 * 109.49461 * 185.41423 * 18 17 16 45 45 H 1.08999 * 109.52533 * 65.33330 * 18 17 16 46 46 H 1.09002 * 109.45684 * 301.35860 * 19 18 17 47 47 H 0.97004 * 119.99935 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.49424 * 58.58426 * 28 19 18 49 49 H 1.08993 * 109.50054 * 178.68438 * 28 19 18 50 50 H 1.08999 * 109.58457 * 246.19983 * 29 16 14 51 51 H 1.08997 * 109.58254 * 6.62900 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3138 6 1 4.0120 -0.9769 -0.3887 7 6 4.1125 -1.3997 -2.5257 8 6 4.8068 -0.3232 -3.3891 9 8 5.1363 0.7358 -2.4641 10 6 3.9932 0.8461 -1.5847 11 7 2.0184 -0.6907 1.1961 12 6 2.1471 -0.0185 2.3571 13 8 1.8589 1.1591 2.4116 14 6 2.6448 -0.7232 3.5773 15 8 2.8160 -1.9244 3.5570 16 7 2.9035 -0.0247 4.7007 17 6 2.8840 1.4444 4.6897 18 6 4.2118 1.9593 5.2541 19 6 4.4472 1.3441 6.6355 20 6 5.7361 1.8748 7.2083 21 1 6.3282 2.5797 6.6438 22 6 6.1594 1.4603 8.4533 23 7 5.4386 0.6014 9.1407 24 14 7.7609 2.1121 9.1603 25 1 8.3817 3.0534 8.1939 26 1 7.4865 2.8220 10.4354 27 1 8.6874 0.9796 9.4136 28 6 4.5340 -0.1787 6.5095 29 6 3.2098 -0.7178 5.9594 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7517 -1.7714 -1.2057 34 1 1.6053 -0.2615 -2.1371 35 1 4.8322 -2.1507 -2.1999 36 1 3.2970 -1.8658 -3.0787 37 1 5.7123 -0.7264 -3.8425 38 1 4.1275 0.0414 -4.1596 39 1 3.1884 1.3928 -2.0763 40 1 4.2738 1.3383 -0.6535 41 1 2.2490 -1.6318 1.1524 42 1 2.0607 1.8035 5.3072 43 1 2.7589 1.8006 3.6672 44 1 4.1734 3.0452 5.3411 45 1 5.0256 1.6764 4.5864 46 1 3.6208 1.6072 7.2957 47 1 5.7366 0.3095 10.0164 48 1 5.3444 -0.4419 5.8298 49 1 4.7249 -0.6145 7.4901 50 1 2.4131 -0.5349 6.6804 51 1 3.2997 -1.7882 5.7746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323893920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:29 Heat of formation + Delta-G solvation = -119.189680 kcal Electronic energy + Delta-G solvation = -30554.501540 eV Core-core repulsion = 26453.682307 eV Total energy + Delta-G solvation = -4100.819232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.83459 -39.84878 -38.61795 -37.04913 -36.47775 -33.65160 -33.14529 -31.22872 -31.08266 -30.20881 -29.61864 -26.64619 -26.38304 -24.76126 -23.37982 -22.70361 -22.23369 -21.19025 -20.54593 -20.33552 -18.91831 -17.39191 -16.98119 -16.69491 -16.48006 -16.08982 -15.90010 -15.66042 -15.31152 -14.82954 -14.54821 -14.41531 -14.08842 -13.81134 -13.50567 -13.35121 -13.26921 -13.07331 -12.77541 -12.70842 -12.56802 -12.39087 -12.25968 -11.92853 -11.78544 -11.64439 -11.20315 -11.17685 -11.06017 -11.00878 -10.92647 -10.82649 -10.57660 -10.37105 -10.09335 -10.08450 -9.57517 -9.52012 -9.41667 -8.93260 -8.66278 -8.36457 -8.08632 -6.00924 -4.07156 1.59026 2.49197 3.28989 3.37306 3.38641 3.41512 3.62999 3.72951 4.05325 4.29706 4.42803 4.46693 4.48129 4.63078 4.70691 4.77010 4.93110 5.02542 5.13350 5.24514 5.28777 5.32166 5.35577 5.38993 5.45252 5.52009 5.62252 5.66331 5.72624 5.84120 5.88953 5.91307 5.96588 6.07716 6.16836 6.31766 6.37562 6.47873 6.56083 6.68570 6.78210 6.99688 7.05350 7.17763 7.31952 7.68122 7.72894 7.86427 7.94487 8.07112 8.24190 8.42449 8.96605 9.57968 11.04578 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.002631 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.496386 B =10638.239704 C =11672.522689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 H 0.094 0.906 4 C -0.118 4.118 5 C -0.126 4.126 6 H 0.088 0.912 7 C -0.151 4.151 8 C 0.043 3.957 9 O -0.375 6.375 10 C 0.048 3.952 11 N -0.700 5.700 12 C 0.512 3.488 13 O -0.509 6.509 14 C 0.497 3.503 15 O -0.541 6.541 16 N -0.562 5.562 17 C 0.069 3.931 18 C -0.124 4.124 19 C 0.046 3.954 20 C -0.511 4.511 21 H 0.055 0.945 22 C 0.060 3.940 23 N -0.891 5.891 24 Si 0.890 3.110 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.285 1.285 28 C -0.122 4.122 29 C 0.104 3.896 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.411 0.589 42 H 0.062 0.938 43 H 0.125 0.875 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.028 0.972 47 H 0.260 0.740 48 H 0.039 0.961 49 H 0.106 0.894 50 H 0.066 0.934 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.333 -4.192 -23.367 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 H 0.112 0.888 4 C -0.156 4.156 5 C -0.145 4.145 6 H 0.107 0.893 7 C -0.189 4.189 8 C -0.033 4.033 9 O -0.294 6.294 10 C -0.029 4.029 11 N -0.354 5.354 12 C 0.294 3.706 13 O -0.386 6.386 14 C 0.279 3.721 15 O -0.420 6.420 16 N -0.293 5.293 17 C -0.052 4.052 18 C -0.162 4.162 19 C 0.027 3.973 20 C -0.549 4.549 21 H 0.074 0.926 22 C -0.141 4.141 23 N -0.531 5.531 24 Si 0.719 3.281 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.160 4.160 29 C -0.017 4.017 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.247 0.753 42 H 0.081 0.919 43 H 0.142 0.858 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.046 0.954 47 H 0.070 0.930 48 H 0.058 0.942 49 H 0.124 0.876 50 H 0.084 0.916 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.246 -3.921 -23.140 25.225 hybrid contribution 0.777 -0.282 0.603 1.024 sum -8.468 -4.203 -22.537 24.439 Atomic orbital electron populations 1.22190 0.94694 1.02481 1.02939 1.21116 0.94415 0.97826 0.83369 0.88823 1.21989 0.94421 1.01743 0.97428 1.22607 0.95849 0.96198 0.99829 0.89340 1.23015 1.00811 0.98769 0.96312 1.23401 1.00106 0.87380 0.92455 1.89191 1.39128 1.55363 1.45720 1.23594 0.88766 0.95840 0.94662 1.45908 1.65835 1.14877 1.08732 1.20464 0.78554 0.86864 0.84724 1.90522 1.48638 1.15375 1.84032 1.19899 0.80443 0.87221 0.84543 1.90706 1.53308 1.14336 1.83662 1.48213 1.63701 1.08582 1.08809 1.22915 0.99224 0.77394 1.05649 1.22022 0.94558 0.99920 0.99680 1.18678 0.97210 0.91063 0.90314 1.21239 1.06560 1.25485 1.01598 0.92629 1.24975 0.97050 0.95076 0.96952 1.69850 1.38189 1.32298 1.12736 0.86560 0.83801 0.78792 0.78990 1.19818 1.21069 1.21068 1.22019 0.92039 0.99902 1.02056 1.22087 1.00044 0.96910 0.82638 0.91646 0.91391 0.92213 0.90531 0.89774 0.90458 0.90306 0.89228 0.92389 0.92013 0.88864 0.75278 0.91941 0.85820 0.91933 0.93135 0.95432 0.93031 0.94216 0.87624 0.91618 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.48 37.16 0.35 -0.88 16 2 C 0.14 1.11 2.50 -67.93 -0.17 0.94 16 3 H 0.09 0.87 6.85 -51.93 -0.36 0.51 16 4 C -0.12 -0.68 3.96 -26.73 -0.11 -0.78 16 5 C -0.13 -0.93 3.05 -89.05 -0.27 -1.21 16 6 H 0.09 0.79 7.66 -51.93 -0.40 0.39 16 7 C -0.15 -0.96 6.74 -25.16 -0.17 -1.13 16 8 C 0.04 0.32 7.64 37.93 0.29 0.61 16 9 O -0.38 -4.08 11.65 -35.23 -0.41 -4.49 16 10 C 0.05 0.43 6.35 37.93 0.24 0.67 16 11 N -0.70 -7.36 4.46 -54.24 -0.24 -7.61 16 12 C 0.51 7.34 7.70 -11.59 -0.09 7.25 16 13 O -0.51 -7.96 12.85 5.50 0.07 -7.89 16 14 C 0.50 8.60 7.73 -11.58 -0.09 8.51 16 15 O -0.54 -10.09 15.93 5.50 0.09 -10.01 16 16 N -0.56 -10.45 2.97 -173.28 -0.52 -10.97 16 17 C 0.07 1.26 5.98 -3.71 -0.02 1.23 16 18 C -0.12 -2.55 5.30 -26.61 -0.14 -2.69 16 19 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 20 C -0.51 -13.80 8.56 -34.44 -0.29 -14.10 16 21 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 23 N -0.89 -24.93 11.31 55.43 0.63 -24.30 16 24 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C -0.12 -2.83 5.15 -26.61 -0.14 -2.96 16 29 C 0.10 2.07 6.44 -3.71 -0.02 2.05 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.37 8.02 -51.93 -0.42 -0.04 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.37 7.73 -51.93 -0.40 -0.04 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.46 7.78 -51.93 -0.40 0.06 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.41 3.99 8.09 -40.82 -0.33 3.66 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.12 2.15 4.32 -54.76 -0.24 1.91 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 48 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.11 2.72 6.03 -51.93 -0.31 2.40 16 50 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 51 H 0.08 1.53 7.01 -51.93 -0.36 1.16 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -30.55 397.53 -9.01 -39.56 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -8.68 Total: 3.58 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.92 Total: -0.01 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.13 Total: -42.87 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.25 Total: -22.39 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.55 -9.01 -39.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323893920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.628 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds