Wall clock time and date at job start Tue Mar 31 2020 20:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47170 * 2 1 4 4 C 1.53005 * 109.47034 * 240.00827 * 2 1 3 5 5 C 1.52999 * 109.46968 * 175.00094 * 4 2 1 6 6 H 1.09003 * 110.45879 * 54.29586 * 5 4 2 7 7 C 1.54511 * 110.50985 * 176.90045 * 5 4 2 8 8 C 1.54481 * 104.06191 * 118.64135 * 7 5 4 9 9 O 1.44423 * 104.80367 * 23.98161 * 8 7 5 10 10 C 1.44648 * 105.36691 * 319.56500 * 9 8 7 11 11 N 1.46496 * 109.47397 * 120.00373 * 2 1 3 12 12 C 1.34773 * 120.00288 * 275.00268 * 11 2 1 13 13 O 1.21352 * 119.99635 * 359.97438 * 12 11 2 14 14 C 1.49445 * 120.00063 * 179.97438 * 12 11 2 15 15 O 1.21349 * 120.00388 * 353.22750 * 14 12 11 16 16 N 1.34782 * 120.00241 * 173.22905 * 14 12 11 17 17 C 1.46934 * 120.62503 * 351.35911 * 16 14 12 18 18 C 1.53190 * 108.77266 * 233.58640 * 17 16 14 19 19 C 1.53041 * 109.31542 * 305.36717 * 18 17 16 20 20 C 1.50696 * 109.45881 * 181.38891 * 19 18 17 21 21 H 1.07993 * 120.00360 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99793 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99957 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00225 * 179.72104 * 22 20 19 25 25 H 1.48503 * 109.46878 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46956 * 120.00117 * 24 22 20 27 27 H 1.48497 * 109.47366 * 240.00300 * 24 22 20 28 28 C 1.53040 * 109.53885 * 61.36488 * 19 18 17 29 29 C 1.46923 * 120.63598 * 171.33709 * 16 14 12 30 30 H 1.09004 * 109.46809 * 299.99559 * 1 2 3 31 31 H 1.09007 * 109.47119 * 59.99322 * 1 2 3 32 32 H 1.08996 * 109.46909 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46472 * 294.99491 * 4 2 1 34 34 H 1.09001 * 109.47121 * 54.99593 * 4 2 1 35 35 H 1.08996 * 110.51067 * 237.28994 * 7 5 4 36 36 H 1.09000 * 110.51321 * 359.97438 * 7 5 4 37 37 H 1.08997 * 110.37241 * 142.81093 * 8 7 5 38 38 H 1.08996 * 110.37242 * 265.03737 * 8 7 5 39 39 H 1.09004 * 110.33821 * 281.59012 * 10 9 8 40 40 H 1.09002 * 110.50750 * 159.18771 * 10 9 8 41 41 H 0.97000 * 119.99814 * 94.99364 * 11 2 1 42 42 H 1.09000 * 109.58279 * 113.80211 * 17 16 14 43 43 H 1.08993 * 109.58548 * 353.37494 * 17 16 14 44 44 H 1.09002 * 109.49461 * 185.41423 * 18 17 16 45 45 H 1.08999 * 109.52533 * 65.33330 * 18 17 16 46 46 H 1.09002 * 109.45684 * 301.35860 * 19 18 17 47 47 H 0.97004 * 119.99935 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.49424 * 58.58426 * 28 19 18 49 49 H 1.08993 * 109.50054 * 178.68438 * 28 19 18 50 50 H 1.08999 * 109.58457 * 246.19983 * 29 16 14 51 51 H 1.08997 * 109.58254 * 6.62900 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3138 6 1 4.0120 -0.9769 -0.3887 7 6 4.1125 -1.3997 -2.5257 8 6 4.8068 -0.3232 -3.3891 9 8 5.1363 0.7358 -2.4641 10 6 3.9932 0.8461 -1.5847 11 7 2.0184 -0.6907 1.1961 12 6 2.1471 -0.0185 2.3571 13 8 1.8589 1.1591 2.4116 14 6 2.6448 -0.7232 3.5773 15 8 2.8160 -1.9244 3.5570 16 7 2.9035 -0.0247 4.7007 17 6 2.8840 1.4444 4.6897 18 6 4.2118 1.9593 5.2541 19 6 4.4472 1.3441 6.6355 20 6 5.7361 1.8748 7.2083 21 1 6.3282 2.5797 6.6438 22 6 6.1594 1.4603 8.4533 23 7 5.4386 0.6014 9.1407 24 14 7.7609 2.1121 9.1603 25 1 8.3817 3.0534 8.1939 26 1 7.4865 2.8220 10.4354 27 1 8.6874 0.9796 9.4136 28 6 4.5340 -0.1787 6.5095 29 6 3.2098 -0.7178 5.9594 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7517 -1.7714 -1.2057 34 1 1.6053 -0.2615 -2.1371 35 1 4.8322 -2.1507 -2.1999 36 1 3.2970 -1.8658 -3.0787 37 1 5.7123 -0.7264 -3.8425 38 1 4.1275 0.0414 -4.1596 39 1 3.1884 1.3928 -2.0763 40 1 4.2738 1.3383 -0.6535 41 1 2.2490 -1.6318 1.1524 42 1 2.0607 1.8035 5.3072 43 1 2.7589 1.8006 3.6672 44 1 4.1734 3.0452 5.3411 45 1 5.0256 1.6764 4.5864 46 1 3.6208 1.6072 7.2957 47 1 5.7366 0.3095 10.0164 48 1 5.3444 -0.4419 5.8298 49 1 4.7249 -0.6145 7.4901 50 1 2.4131 -0.5349 6.6804 51 1 3.2997 -1.7882 5.7746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323893920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:28 Heat of formation + Delta-G solvation = -138.584815 kcal Electronic energy + Delta-G solvation = -30555.342576 eV Core-core repulsion = 26453.682307 eV Total energy + Delta-G solvation = -4101.660269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.04782 -40.61359 -39.81925 -38.58991 -37.41939 -35.39149 -34.01929 -32.95023 -31.99716 -31.85398 -30.19290 -28.35793 -27.02731 -26.22713 -24.42495 -24.04294 -23.64867 -22.07217 -21.62198 -21.18248 -20.49807 -18.69048 -18.52381 -18.04592 -17.38846 -17.20290 -16.86667 -16.68373 -16.52100 -16.16110 -15.92139 -15.32025 -15.28854 -15.04456 -14.86796 -14.61363 -14.48880 -14.14200 -14.06756 -13.86234 -13.69864 -13.47042 -13.15579 -13.06809 -12.88485 -12.85206 -12.55711 -12.44259 -12.32752 -12.24179 -12.17524 -11.97671 -11.77440 -11.63014 -11.48090 -11.37072 -11.19990 -10.86769 -10.73940 -10.46408 -10.37727 -10.03981 -9.69734 -8.09243 -6.23062 0.32607 1.31284 1.39310 1.42027 1.52621 2.09946 2.42749 2.49570 3.04737 3.17080 3.28560 3.49697 3.74419 3.90878 4.01817 4.11048 4.19224 4.20725 4.28645 4.33552 4.34776 4.42692 4.45753 4.56441 4.60782 4.65128 4.71912 4.75997 4.84900 4.85034 4.90060 4.92447 4.95074 4.98180 5.07648 5.11824 5.17102 5.18820 5.28992 5.33743 5.36039 5.42557 5.47208 5.62318 5.88390 5.95067 6.01949 6.08396 6.30924 6.36816 6.69263 6.87224 6.93201 7.44952 8.94492 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.002631 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.496386 B =10638.239704 C =11672.522689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.133 3.867 3 H 0.083 0.917 4 C -0.107 4.107 5 C -0.124 4.124 6 H 0.068 0.932 7 C -0.146 4.146 8 C 0.036 3.964 9 O -0.410 6.410 10 C 0.044 3.956 11 N -0.680 5.680 12 C 0.516 3.484 13 O -0.524 6.524 14 C 0.495 3.505 15 O -0.555 6.555 16 N -0.572 5.572 17 C 0.080 3.920 18 C -0.115 4.115 19 C 0.044 3.956 20 C -0.532 4.532 21 H 0.050 0.950 22 C 0.014 3.986 23 N -0.915 5.915 24 Si 0.951 3.049 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.282 1.282 28 C -0.111 4.111 29 C 0.115 3.885 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.417 0.583 42 H 0.068 0.932 43 H 0.140 0.860 44 H 0.069 0.931 45 H 0.042 0.958 46 H 0.004 0.996 47 H 0.261 0.739 48 H 0.024 0.976 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 -4.570 -25.861 28.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.030 3.970 3 H 0.101 0.899 4 C -0.144 4.144 5 C -0.143 4.143 6 H 0.086 0.914 7 C -0.183 4.183 8 C -0.040 4.040 9 O -0.330 6.330 10 C -0.033 4.033 11 N -0.333 5.333 12 C 0.297 3.703 13 O -0.402 6.402 14 C 0.278 3.722 15 O -0.434 6.434 16 N -0.303 5.303 17 C -0.040 4.040 18 C -0.154 4.154 19 C 0.025 3.975 20 C -0.570 4.570 21 H 0.068 0.932 22 C -0.185 4.185 23 N -0.554 5.554 24 Si 0.778 3.222 25 H -0.194 1.194 26 H -0.205 1.205 27 H -0.208 1.208 28 C -0.149 4.149 29 C -0.006 4.006 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.254 0.746 42 H 0.086 0.914 43 H 0.156 0.844 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.022 0.978 47 H 0.070 0.930 48 H 0.043 0.957 49 H 0.097 0.903 50 H 0.089 0.911 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.319 -4.318 -25.681 28.011 hybrid contribution 1.121 -0.197 1.316 1.740 sum -9.199 -4.516 -24.364 26.432 Atomic orbital electron populations 1.22159 0.93624 1.03146 1.02934 1.21373 0.95144 0.97430 0.83038 0.89897 1.21971 0.92893 1.02727 0.96819 1.22558 0.97064 0.95243 0.99462 0.91373 1.23001 1.01384 0.98188 0.95734 1.23621 1.00970 0.86970 0.92453 1.89150 1.40393 1.56699 1.46758 1.23663 0.88756 0.96977 0.93886 1.45932 1.64067 1.15075 1.08224 1.19880 0.79033 0.86602 0.84771 1.90497 1.49865 1.15754 1.84098 1.20462 0.79531 0.87157 0.85026 1.90690 1.53635 1.15084 1.84037 1.48203 1.64526 1.08728 1.08864 1.22870 0.97669 0.77114 1.06387 1.21893 0.95886 1.00182 0.97404 1.18642 0.95258 0.91833 0.91764 1.21582 1.07691 1.25673 1.02100 0.93163 1.25703 1.00047 0.95350 0.97374 1.69970 1.39515 1.32992 1.12947 0.85606 0.80121 0.78234 0.78289 1.19404 1.20532 1.20779 1.21768 0.93506 0.99274 1.00400 1.21795 0.98242 0.96988 0.83625 0.94025 0.89055 0.91194 0.88774 0.87244 0.90979 0.87747 0.88815 0.90683 0.90336 0.90938 0.74564 0.91404 0.84364 0.91275 0.93869 0.97801 0.92951 0.95699 0.90321 0.91136 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.48 71.98 0.68 -1.24 16 2 C 0.13 1.82 2.50 44.99 0.11 1.93 16 3 H 0.08 1.38 6.85 -2.39 -0.02 1.37 16 4 C -0.11 -0.84 3.96 30.60 0.12 -0.72 16 5 C -0.12 -1.59 3.05 -9.78 -0.03 -1.62 16 6 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 7 C -0.15 -1.47 6.74 31.61 0.21 -1.26 16 8 C 0.04 0.46 7.64 72.49 0.55 1.01 16 9 O -0.41 -8.66 11.65 -148.98 -1.74 -10.39 16 10 C 0.04 0.73 6.35 72.48 0.46 1.19 16 11 N -0.68 -13.13 4.46 -443.87 -1.98 -15.11 16 12 C 0.52 14.25 7.70 87.27 0.67 14.92 16 13 O -0.52 -15.81 12.85 -3.25 -0.04 -15.85 16 14 C 0.50 16.83 7.73 87.27 0.67 17.50 16 15 O -0.55 -20.32 15.93 -3.24 -0.05 -20.37 16 16 N -0.57 -21.21 2.97 -820.48 -2.44 -23.65 16 17 C 0.08 2.89 5.98 86.36 0.52 3.41 16 18 C -0.12 -4.81 5.30 30.67 0.16 -4.65 16 19 C 0.04 2.17 2.06 -11.51 -0.02 2.15 16 20 C -0.53 -29.43 8.56 25.60 0.22 -29.21 16 21 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 22 C 0.01 0.77 5.30 84.65 0.45 1.22 16 23 N -0.91 -52.26 11.31 21.45 0.24 -52.02 16 24 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 27 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 28 C -0.11 -5.32 5.15 30.67 0.16 -5.16 16 29 C 0.12 4.65 6.44 86.36 0.56 5.21 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.11 0.43 8.02 -2.39 -0.02 0.41 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.10 0.53 7.73 -2.39 -0.02 0.51 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 1.01 7.78 -2.38 -0.02 0.99 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.42 7.24 8.09 -92.71 -0.75 6.49 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.14 4.68 4.32 -47.23 -0.20 4.48 16 44 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 45 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 48 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 49 H 0.08 4.21 6.03 -2.39 -0.01 4.19 16 50 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 51 H 0.08 3.22 7.01 -2.39 -0.02 3.20 16 Total: -1.00 -67.28 397.53 1.50 -65.78 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.02 Total: 21.01 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 5.50 Total: 4.70 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -4.18 Total: -90.78 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -1.83 Total: -46.62 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.28 1.50 -65.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323893920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.802 kcal (2) G-P(sol) polarization free energy of solvation -67.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds