Wall clock time and date at job start Tue Mar 31 2020 20:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00115 * 2 1 4 4 C 1.53004 * 109.46860 * 60.74587 * 3 2 1 5 5 C 1.52999 * 109.46969 * 180.74216 * 3 2 1 6 6 H 1.09008 * 109.46890 * 184.99978 * 5 3 2 7 7 C 1.52995 * 109.47509 * 305.00364 * 5 3 2 8 8 N 1.46504 * 109.47003 * 65.00830 * 5 3 2 9 9 C 1.34776 * 120.00371 * 154.99897 * 8 5 3 10 10 O 1.21347 * 119.99542 * 359.97438 * 9 8 5 11 11 C 1.49449 * 120.00050 * 179.97438 * 9 8 5 12 12 O 1.21352 * 120.00048 * 5.10633 * 11 9 8 13 13 N 1.34776 * 120.00040 * 185.09821 * 11 9 8 14 14 C 1.46494 * 120.00225 * 185.12908 * 13 11 9 15 15 C 1.52997 * 109.47274 * 184.68568 * 14 13 11 16 16 C 1.50703 * 115.55008 * 293.65831 * 15 14 13 17 17 H 1.07999 * 120.00000 * 94.93143 * 16 15 14 18 18 C 1.37880 * 120.00067 * 274.66394 * 16 15 14 19 19 N 1.31515 * 120.00078 * 355.53510 * 18 16 15 20 20 Si 1.86799 * 119.99905 * 175.54164 * 18 16 15 21 21 H 1.48499 * 109.47283 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47607 * 119.99792 * 20 18 16 23 23 H 1.48508 * 109.46940 * 239.99794 * 20 18 16 24 24 C 1.52997 * 117.50235 * 79.32876 * 15 14 13 25 25 C 1.53002 * 117.50244 * 147.99151 * 15 14 13 26 26 C 1.52995 * 109.47264 * 300.74791 * 3 2 1 27 27 C 1.53003 * 117.50044 * 131.07773 * 26 3 2 28 28 C 1.52998 * 117.50088 * 62.45433 * 26 3 2 29 29 H 1.09002 * 109.47021 * 188.41843 * 1 2 3 30 30 H 1.09001 * 109.47080 * 308.42059 * 1 2 3 31 31 H 1.09000 * 109.46812 * 68.41942 * 1 2 3 32 32 H 1.08999 * 109.47084 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.46869 * 299.99973 * 4 3 2 34 34 H 1.09004 * 109.47032 * 60.00345 * 4 3 2 35 35 H 1.08994 * 109.47403 * 59.99907 * 7 5 3 36 36 H 1.09003 * 109.46846 * 180.02562 * 7 5 3 37 37 H 1.08997 * 109.47003 * 299.99723 * 7 5 3 38 38 H 0.97009 * 119.99435 * 334.99292 * 8 5 3 39 39 H 0.96997 * 119.99677 * 5.13258 * 13 11 9 40 40 H 1.08999 * 109.47340 * 64.67996 * 14 13 11 41 41 H 1.09009 * 109.46981 * 304.68279 * 14 13 11 42 42 H 0.96991 * 119.99837 * 185.00605 * 19 18 16 43 43 H 1.09002 * 117.50160 * 215.00450 * 24 15 14 44 44 H 1.08999 * 117.50053 * 0.02562 * 24 15 14 45 45 H 1.08998 * 117.49623 * 359.97129 * 25 15 14 46 46 H 1.09003 * 117.49891 * 144.97335 * 25 15 14 47 47 H 1.09002 * 115.54757 * 276.79114 * 26 3 2 48 48 H 1.08996 * 117.49701 * 0.02562 * 27 26 3 49 49 H 1.08998 * 117.49619 * 145.02310 * 27 26 3 50 50 H 1.09000 * 117.50391 * 214.98396 * 28 26 3 51 51 H 1.09003 * 117.49827 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5737 2.0580 1.2586 5 6 3.5354 1.1846 -0.0187 6 1 3.9795 2.1761 0.0709 7 6 3.9924 0.3133 1.1529 8 7 3.9612 0.5709 -1.2790 9 6 5.1996 0.8034 -1.7572 10 8 5.9618 1.5215 -1.1441 11 6 5.6341 0.1769 -3.0426 12 8 4.8435 -0.4652 -3.7024 13 7 6.9040 0.3251 -3.4691 14 6 7.3012 -0.1922 -4.7808 15 6 8.8072 0.0002 -4.9702 16 6 9.2735 1.4305 -5.0605 17 1 9.6299 1.9391 -4.1770 18 6 9.2501 2.0880 -6.2722 19 7 8.9048 1.4419 -7.3644 20 14 9.7093 3.8964 -6.3625 21 1 10.0564 4.3874 -5.0047 22 1 10.8768 4.0664 -7.2642 23 1 8.5590 4.6734 -6.8903 24 6 9.7389 -1.0049 -4.2901 25 6 9.5524 -1.0399 -5.8091 26 6 1.5440 2.0713 -1.2397 27 6 1.0063 3.4889 -1.0336 28 6 0.0456 2.3486 -1.3767 29 1 -0.3633 -1.0166 0.1505 30 1 -0.3633 0.6386 0.8052 31 1 -0.3633 0.3780 -0.9556 32 1 2.0174 3.0536 1.2588 33 1 0.4872 2.1441 1.2719 34 1 1.9059 1.5124 2.1418 35 1 3.5483 -0.6780 1.0634 36 1 5.0790 0.2277 1.1398 37 1 3.6756 0.7700 2.0905 38 1 3.3517 -0.0029 -1.7692 39 1 7.5549 0.7742 -2.9074 40 1 6.7650 0.3470 -5.5617 41 1 7.0602 -1.2536 -4.8410 42 1 8.9580 1.8835 -8.2264 43 1 10.6891 -0.6317 -3.9080 44 1 9.2791 -1.8035 -3.7081 45 1 8.9698 -1.8616 -6.2256 46 1 10.3796 -0.6897 -6.4265 47 1 2.1048 1.8732 -2.1531 48 1 0.9852 3.8759 -0.0149 49 1 1.2134 4.2237 -1.8115 50 1 -0.3794 2.3333 -2.3803 51 1 -0.6081 1.9850 -0.5839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325657217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:11 Heat of formation + Delta-G solvation = -73.006357 kcal Electronic energy + Delta-G solvation = -30543.139771 eV Core-core repulsion = 26444.323198 eV Total energy + Delta-G solvation = -4098.816573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.93264 -41.01010 -39.60161 -38.47385 -36.83127 -36.55218 -35.03607 -33.96871 -32.92409 -29.80726 -28.74256 -28.25195 -27.43949 -26.27028 -24.69110 -23.36911 -22.95108 -22.51889 -21.43280 -21.21420 -20.46680 -19.53725 -18.22408 -17.93051 -17.53368 -17.22169 -16.96833 -16.61371 -16.53081 -16.24658 -15.78833 -15.73186 -15.43094 -15.10449 -14.87462 -14.68336 -14.42262 -14.07628 -13.88814 -13.66681 -13.49007 -13.18960 -13.04211 -12.99471 -12.95616 -12.87194 -12.81743 -12.56713 -12.36222 -12.31580 -12.02330 -11.99918 -11.78086 -11.43170 -11.20404 -11.02339 -10.97895 -10.73400 -10.46684 -10.36566 -10.24609 -10.11967 -9.98020 -8.11489 -6.25213 0.36954 1.36249 1.38997 1.43544 1.53048 2.15750 2.41059 2.55047 2.72086 2.94725 3.15979 3.39484 3.47428 3.59793 3.65945 3.90812 4.00023 4.09761 4.18764 4.24055 4.34233 4.37945 4.50378 4.51712 4.61138 4.63572 4.65848 4.67990 4.74553 4.79084 4.89893 4.90529 4.93284 4.96572 4.99848 5.01373 5.12145 5.16686 5.21508 5.27517 5.32108 5.35438 5.39609 5.51967 5.67622 5.76572 6.00029 6.26063 6.35036 6.44559 6.76694 6.82466 6.99211 7.44527 8.95306 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.002700 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.496565 B =10369.661780 C =11016.504823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.387 6.387 3 C 0.146 3.854 4 C -0.180 4.180 5 C 0.156 3.844 6 H 0.096 0.904 7 C -0.156 4.156 8 N -0.679 5.679 9 C 0.515 3.485 10 O -0.539 6.539 11 C 0.495 3.505 12 O -0.557 6.557 13 N -0.669 5.669 14 C 0.175 3.825 15 C -0.003 4.003 16 C -0.507 4.507 17 H 0.058 0.942 18 C 0.028 3.972 19 N -0.903 5.903 20 Si 0.946 3.054 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.287 1.287 24 C -0.181 4.181 25 C -0.145 4.145 26 C -0.204 4.204 27 C -0.173 4.173 28 C -0.172 4.172 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.417 0.583 39 H 0.415 0.585 40 H 0.039 0.961 41 H 0.054 0.946 42 H 0.260 0.740 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.086 0.914 48 H 0.119 0.881 49 H 0.088 0.912 50 H 0.096 0.904 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.042 0.147 18.353 26.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.307 6.307 3 C 0.107 3.893 4 C -0.237 4.237 5 C 0.053 3.947 6 H 0.114 0.886 7 C -0.214 4.214 8 N -0.332 5.332 9 C 0.295 3.705 10 O -0.416 6.416 11 C 0.275 3.725 12 O -0.437 6.437 13 N -0.319 5.319 14 C 0.052 3.948 15 C -0.003 4.003 16 C -0.545 4.545 17 H 0.076 0.924 18 C -0.173 4.173 19 N -0.541 5.541 20 Si 0.772 3.228 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.213 1.213 24 C -0.218 4.218 25 C -0.183 4.183 26 C -0.223 4.223 27 C -0.210 4.210 28 C -0.208 4.208 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.254 0.746 39 H 0.251 0.749 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.104 0.896 48 H 0.137 0.863 49 H 0.107 0.893 50 H 0.114 0.886 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.024 0.098 18.125 26.277 hybrid contribution 0.414 1.005 -1.014 1.486 sum -18.610 1.103 17.111 25.305 Atomic orbital electron populations 1.23395 0.80235 1.03525 1.01586 1.87945 1.21167 1.26563 1.95022 1.21062 0.90715 0.83679 0.93890 1.22541 1.03276 1.01457 0.96413 1.21233 0.92449 0.98179 0.82867 0.88587 1.22112 1.00915 1.00796 0.97599 1.45785 1.13454 1.49472 1.24470 1.19976 0.83478 0.81734 0.85300 1.90739 1.53392 1.37891 1.59582 1.20403 0.83349 0.81741 0.86984 1.90699 1.53137 1.41447 1.58415 1.45793 1.10057 1.56166 1.19851 1.20830 0.95967 0.96165 0.81862 1.19065 0.88026 0.91509 1.01735 1.20691 1.43356 0.95889 0.94580 0.92414 1.25641 0.94686 1.01284 0.95715 1.70093 1.47749 1.38038 0.98193 0.85687 0.77559 0.81240 0.78277 1.19095 1.20588 1.21278 1.23021 1.01677 1.02245 0.94865 1.22393 1.02900 1.00538 0.92452 1.22858 0.98787 1.00724 0.99899 1.23234 1.03208 0.90468 1.04099 1.23375 0.91263 1.02102 1.04089 0.89272 0.91954 0.92198 0.89949 0.89939 0.90201 0.91451 0.93518 0.88956 0.74603 0.74863 0.94235 0.92797 0.93070 0.89842 0.89270 0.90699 0.91525 0.89573 0.86275 0.89313 0.88594 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.10 113.37 1.03 1.12 16 2 O -0.39 -6.72 9.20 -148.98 -1.37 -8.09 16 3 C 0.15 2.38 0.47 -10.79 -0.01 2.37 16 4 C -0.18 -1.90 6.67 71.98 0.48 -1.42 16 5 C 0.16 3.30 1.95 44.99 0.09 3.39 16 6 H 0.10 2.20 7.58 -2.38 -0.02 2.18 16 7 C -0.16 -3.00 9.04 71.98 0.65 -2.34 16 8 N -0.68 -18.13 4.08 -443.86 -1.81 -19.94 16 9 C 0.51 17.26 7.85 87.27 0.69 17.94 16 10 O -0.54 -19.79 16.16 -3.24 -0.05 -19.84 16 11 C 0.49 19.14 7.88 87.27 0.69 19.83 16 12 O -0.56 -23.39 16.47 -3.25 -0.05 -23.45 16 13 N -0.67 -27.41 5.47 -464.42 -2.54 -29.95 16 14 C 0.18 7.98 5.53 86.38 0.48 8.46 16 15 C 0.00 -0.12 1.46 -52.93 -0.08 -0.20 16 16 C -0.51 -26.67 8.65 25.60 0.22 -26.44 16 17 H 0.06 3.02 7.82 -2.91 -0.02 3.00 16 18 C 0.03 1.49 5.43 84.66 0.46 1.95 16 19 N -0.90 -50.75 12.64 21.45 0.27 -50.48 16 20 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 C -0.18 -7.38 9.96 30.62 0.30 -7.08 16 25 C -0.14 -6.59 9.12 30.62 0.28 -6.31 16 26 C -0.20 -3.59 5.04 -10.79 -0.05 -3.65 16 27 C -0.17 -2.43 9.61 30.60 0.29 -2.14 16 28 C -0.17 -2.21 7.63 30.59 0.23 -1.98 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.48 5.57 -2.39 -0.01 0.47 16 31 H 0.06 0.68 5.12 -2.39 -0.01 0.67 16 32 H 0.08 0.79 6.86 -2.39 -0.02 0.78 16 33 H 0.08 0.63 5.37 -2.39 -0.01 0.62 16 34 H 0.08 0.76 6.57 -2.39 -0.02 0.75 16 35 H 0.07 1.33 7.56 -2.39 -0.02 1.31 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.29 6.56 -2.39 -0.02 1.27 16 38 H 0.42 11.09 7.65 -92.70 -0.71 10.39 16 39 H 0.41 16.73 7.87 -92.71 -0.73 16.00 16 40 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.05 2.36 8.05 -2.38 -0.02 2.34 16 42 H 0.26 14.03 8.32 -92.72 -0.77 13.26 16 43 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 44 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 46 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 47 H 0.09 2.01 7.22 -2.39 -0.02 1.99 16 48 H 0.12 1.24 5.87 -2.39 -0.01 1.23 16 49 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.12 1.09 4.83 -2.39 -0.01 1.08 16 Total: -1.00 -63.30 402.36 1.75 -61.55 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: -0.47 Total: 41.48 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 5.76 Total: 3.51 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -4.08 Total: -100.36 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -1.48 Total: -51.38 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -63.30 1.75 -61.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325657217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.454 kcal (2) G-P(sol) polarization free energy of solvation -63.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds