Wall clock time and date at job start Tue Mar 31 2020 20:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 114.00030 * 2 1 4 4 C 1.53005 * 109.47425 * 60.14486 * 3 2 1 5 5 C 1.53001 * 109.47528 * 180.14622 * 3 2 1 6 6 H 1.08994 * 109.47202 * 176.84120 * 5 3 2 7 7 C 1.52996 * 109.46890 * 56.83584 * 5 3 2 8 8 N 1.46502 * 109.46848 * 296.84275 * 5 3 2 9 9 C 1.34779 * 119.99758 * 205.00110 * 8 5 3 10 10 O 1.21339 * 120.00001 * 359.97438 * 9 8 5 11 11 C 1.49453 * 119.99714 * 179.97438 * 9 8 5 12 12 O 1.21351 * 120.00354 * 5.07820 * 11 9 8 13 13 N 1.34773 * 119.99783 * 185.08113 * 11 9 8 14 14 C 1.46503 * 120.00048 * 185.34900 * 13 11 9 15 15 C 1.52998 * 109.47093 * 184.60903 * 14 13 11 16 16 C 1.50699 * 115.55049 * 299.72277 * 15 14 13 17 17 H 1.07998 * 119.99720 * 95.43183 * 16 15 14 18 18 C 1.37876 * 119.99968 * 275.16898 * 16 15 14 19 19 N 1.31512 * 120.00410 * 355.69853 * 18 16 15 20 20 Si 1.86808 * 119.99625 * 175.70381 * 18 16 15 21 21 H 1.48496 * 109.47166 * 90.00094 * 20 18 16 22 22 H 1.48502 * 109.46679 * 209.99505 * 20 18 16 23 23 H 1.48500 * 109.47094 * 329.99180 * 20 18 16 24 24 C 1.52998 * 117.50100 * 85.40036 * 15 14 13 25 25 C 1.53010 * 117.49940 * 154.05908 * 15 14 13 26 26 C 1.53003 * 109.47161 * 300.14511 * 3 2 1 27 27 C 1.53000 * 117.50193 * 136.02758 * 26 3 2 28 28 C 1.52997 * 60.00097 * 252.51266 * 27 26 3 29 29 H 1.09002 * 109.47084 * 188.89399 * 1 2 3 30 30 H 1.08997 * 109.46861 * 308.88700 * 1 2 3 31 31 H 1.08997 * 109.46738 * 68.89225 * 1 2 3 32 32 H 1.08996 * 109.47095 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.46780 * 300.00098 * 4 3 2 34 34 H 1.09002 * 109.46972 * 59.99767 * 4 3 2 35 35 H 1.08999 * 109.47012 * 65.84499 * 7 5 3 36 36 H 1.08999 * 109.47238 * 185.83485 * 7 5 3 37 37 H 1.08999 * 109.47744 * 305.84148 * 7 5 3 38 38 H 0.96997 * 120.00233 * 24.99180 * 8 5 3 39 39 H 0.97001 * 120.00207 * 5.34253 * 13 11 9 40 40 H 1.09001 * 109.47431 * 64.59963 * 14 13 11 41 41 H 1.09011 * 109.46723 * 304.60362 * 14 13 11 42 42 H 0.96996 * 120.00086 * 185.00765 * 19 18 16 43 43 H 1.08999 * 117.49702 * 215.00132 * 24 15 14 44 44 H 1.08993 * 117.49895 * 0.02562 * 24 15 14 45 45 H 1.09005 * 117.49290 * 359.97421 * 25 15 14 46 46 H 1.08995 * 117.49839 * 144.96704 * 25 15 14 47 47 H 1.09002 * 115.54928 * 281.73568 * 26 3 2 48 48 H 1.09001 * 117.49666 * 0.02562 * 27 26 3 49 49 H 1.08995 * 117.50117 * 145.01799 * 27 26 3 50 50 H 1.09000 * 117.49645 * 252.50884 * 28 27 26 51 51 H 1.09003 * 117.50033 * 107.48914 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5617 2.0635 1.2511 5 6 3.5355 1.1847 -0.0037 6 1 3.9785 2.1789 -0.0603 7 6 3.9788 0.3591 -1.2131 8 7 3.9759 0.5231 1.2270 9 6 5.2198 0.7378 1.6994 10 8 5.9751 1.4785 1.1051 11 6 5.6689 0.0633 2.9552 12 8 4.9487 -0.7477 3.4994 13 7 6.8738 0.3559 3.4833 14 6 7.3641 -0.3882 4.6463 15 6 8.6916 0.2123 5.1132 16 6 9.8073 0.1894 4.1005 17 1 9.9935 1.0553 3.4826 18 6 10.5939 -0.9351 3.9666 19 7 10.4261 -1.9555 4.7790 20 14 11.8980 -1.0090 2.6311 21 1 13.1799 -0.4789 3.1612 22 1 12.0854 -2.4176 2.1999 23 1 11.4653 -0.1895 1.4708 24 6 8.6300 1.4049 6.0697 25 6 9.0697 0.0322 6.5849 26 6 1.5559 2.0660 -1.2474 27 6 1.1256 3.5233 -1.0687 28 6 0.0766 2.4443 -1.3444 29 1 -0.3633 -1.0153 0.1589 30 1 -0.3633 0.6451 0.7999 31 1 -0.3633 0.3701 -0.9587 32 1 2.0047 3.0593 1.2508 33 1 0.4751 2.1495 1.2536 34 1 1.8854 1.5216 2.1398 35 1 3.7432 0.9010 -2.1290 36 1 5.0535 0.1852 -1.1602 37 1 3.4555 -0.5971 -1.2119 38 1 3.3723 -0.0692 1.7020 39 1 7.4165 1.0590 3.0935 40 1 7.5139 -1.4326 4.3727 41 1 6.6332 -0.3250 5.4525 42 1 11.0261 -2.7162 4.7326 43 1 9.3964 2.1730 5.9663 44 1 7.6438 1.7615 6.3665 45 1 8.3723 -0.5138 7.2204 46 1 10.1252 -0.1033 6.8204 47 1 2.0697 1.8023 -2.1719 48 1 1.1666 3.9404 -0.0625 49 1 1.3564 4.2188 -1.8756 50 1 -0.3828 2.4299 -2.3328 51 1 -0.5730 2.1513 -0.5196 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325657221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:17 Heat of formation + Delta-G solvation = -58.469491 kcal Electronic energy + Delta-G solvation = -30430.773701 eV Core-core repulsion = 26332.587493 eV Total energy + Delta-G solvation = -4098.186208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.87574 -39.86846 -38.13646 -36.68774 -36.26625 -35.47932 -33.36719 -31.96499 -31.40518 -29.98605 -27.34653 -27.02325 -25.47244 -24.58772 -24.06253 -22.85505 -21.75014 -21.11008 -20.06603 -19.65619 -19.35856 -18.09850 -17.02099 -16.61154 -16.11446 -16.03710 -15.91514 -15.33963 -15.17897 -14.91551 -14.67426 -14.49542 -14.12479 -13.95876 -13.72556 -13.34055 -13.11874 -12.93274 -12.68030 -12.60454 -12.38496 -12.33669 -11.97930 -11.84892 -11.62577 -11.60372 -11.29014 -11.23866 -11.11068 -10.98360 -10.93058 -10.62196 -10.51217 -10.45545 -10.23684 -9.77870 -9.59613 -9.18662 -9.13328 -9.06499 -8.52480 -8.36911 -8.13847 -6.07658 -4.17444 1.84657 2.69293 3.17477 3.28014 3.35990 3.40121 3.53956 3.67898 4.01506 4.28039 4.30116 4.37537 4.44979 4.55090 4.63428 4.87087 4.97533 5.00486 5.10836 5.18035 5.20389 5.21554 5.25564 5.35851 5.38635 5.40873 5.47286 5.50022 5.58411 5.68268 5.74804 5.84064 5.92494 5.98002 6.20937 6.29394 6.37097 6.42639 6.48839 6.68826 6.77713 6.87170 7.04448 7.09479 7.29568 7.36033 7.51500 7.82292 7.93111 8.21459 8.32646 8.58157 8.84829 9.50505 10.99433 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018277 B = 0.002513 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.572148 B =11139.055778 C =11663.297726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.368 6.368 3 C 0.139 3.861 4 C -0.186 4.186 5 C 0.163 3.837 6 H 0.103 0.897 7 C -0.163 4.163 8 N -0.698 5.698 9 C 0.509 3.491 10 O -0.520 6.520 11 C 0.495 3.505 12 O -0.541 6.541 13 N -0.665 5.665 14 C 0.159 3.841 15 C 0.022 3.978 16 C -0.501 4.501 17 H 0.062 0.938 18 C 0.074 3.926 19 N -0.875 5.875 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.271 1.271 24 C -0.210 4.210 25 C -0.140 4.140 26 C -0.178 4.178 27 C -0.176 4.176 28 C -0.180 4.180 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.415 0.585 39 H 0.414 0.586 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.262 0.738 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.116 0.884 48 H 0.103 0.897 49 H 0.096 0.904 50 H 0.097 0.903 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.132 7.893 -10.584 24.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.287 6.287 3 C 0.100 3.900 4 C -0.243 4.243 5 C 0.059 3.941 6 H 0.121 0.879 7 C -0.221 4.221 8 N -0.352 5.352 9 C 0.290 3.710 10 O -0.395 6.395 11 C 0.274 3.726 12 O -0.420 6.420 13 N -0.315 5.315 14 C 0.037 3.963 15 C 0.021 3.979 16 C -0.539 4.539 17 H 0.080 0.920 18 C -0.130 4.130 19 N -0.511 5.511 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.196 1.196 24 C -0.247 4.247 25 C -0.179 4.179 26 C -0.197 4.197 27 C -0.213 4.213 28 C -0.217 4.217 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.252 0.748 39 H 0.251 0.749 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.106 0.894 47 H 0.134 0.866 48 H 0.121 0.879 49 H 0.115 0.885 50 H 0.115 0.885 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.908 7.443 -10.612 24.600 hybrid contribution 0.551 0.034 -0.682 0.877 sum -20.357 7.478 -11.294 24.451 Atomic orbital electron populations 1.23088 0.81488 1.02575 1.00575 1.87985 1.19666 1.26248 1.94823 1.21147 0.92550 0.83519 0.92831 1.22559 1.01929 1.01596 0.98251 1.20928 0.90389 0.98140 0.84658 0.87938 1.22161 1.02381 1.01037 0.96551 1.45765 1.14517 1.48597 1.26310 1.20492 0.82418 0.81919 0.86171 1.90748 1.52994 1.36197 1.59524 1.19942 0.83481 0.83909 0.85278 1.90712 1.54291 1.35240 1.61749 1.45867 1.16773 1.37600 1.31254 1.21172 0.94303 0.95928 0.84910 1.19026 0.92778 0.95765 0.90346 1.20376 1.14326 0.99723 1.19429 0.91989 1.24984 0.97027 0.95267 0.95738 1.69983 1.37020 1.07252 1.36888 0.86622 0.81739 0.77388 0.82540 1.20660 1.21173 1.19569 1.23043 1.00058 0.92544 1.09081 1.22472 1.00663 0.96703 0.98018 1.22878 0.98526 0.98128 1.00184 1.23166 1.03252 0.91205 1.03680 1.23179 0.91562 1.03595 1.03384 0.89943 0.93681 0.92830 0.90671 0.91683 0.90960 0.91650 0.91714 0.91167 0.74785 0.74933 0.90870 0.93472 0.92858 0.90247 0.91656 0.91743 0.89425 0.86629 0.87897 0.88506 0.88471 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.18 101.05 0.93 1.06 16 2 O -0.37 -3.59 9.09 -35.23 -0.32 -3.91 16 3 C 0.14 1.24 0.47 -90.61 -0.04 1.20 16 4 C -0.19 -1.54 6.81 37.16 0.25 -1.29 16 5 C 0.16 1.83 1.94 -67.93 -0.13 1.70 16 6 H 0.10 1.21 7.58 -51.93 -0.39 0.81 16 7 C -0.16 -1.81 9.06 37.16 0.34 -1.47 16 8 N -0.70 -9.40 4.31 -54.24 -0.23 -9.63 16 9 C 0.51 8.56 7.85 -11.58 -0.09 8.47 16 10 O -0.52 -9.65 16.16 5.51 0.09 -9.56 16 11 C 0.49 9.52 7.88 -11.59 -0.09 9.43 16 12 O -0.54 -11.24 16.47 5.50 0.09 -11.15 16 13 N -0.67 -13.60 5.43 -60.72 -0.33 -13.93 16 14 C 0.16 3.58 5.54 -4.04 -0.02 3.56 16 15 C 0.02 0.51 1.53 -155.66 -0.24 0.27 16 16 C -0.50 -13.04 8.36 -34.44 -0.29 -13.33 16 17 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 18 C 0.07 1.98 5.43 -17.82 -0.10 1.88 16 19 N -0.88 -24.22 12.67 55.43 0.70 -23.52 16 20 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.21 -4.40 9.95 -26.69 -0.27 -4.66 16 25 C -0.14 -3.19 9.18 -26.69 -0.25 -3.44 16 26 C -0.18 -1.31 4.91 -90.62 -0.44 -1.75 16 27 C -0.18 -1.10 9.69 -26.73 -0.26 -1.36 16 28 C -0.18 -1.05 7.62 -26.73 -0.20 -1.26 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.28 5.55 -51.93 -0.29 -0.01 16 31 H 0.05 0.33 5.52 -51.93 -0.29 0.04 16 32 H 0.07 0.59 6.64 -51.93 -0.34 0.25 16 33 H 0.06 0.44 5.22 -51.93 -0.27 0.17 16 34 H 0.07 0.69 7.24 -51.93 -0.38 0.31 16 35 H 0.06 0.59 6.59 -51.93 -0.34 0.25 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.80 7.42 -51.93 -0.39 0.41 16 38 H 0.42 5.50 7.39 -40.82 -0.30 5.20 16 39 H 0.41 8.43 7.67 -40.82 -0.31 8.11 16 40 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 41 H 0.05 1.02 8.07 -51.92 -0.42 0.60 16 42 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 43 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 47 H 0.12 0.86 6.46 -51.93 -0.34 0.52 16 48 H 0.10 0.63 5.89 -51.93 -0.31 0.33 16 49 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.10 0.54 5.09 -51.93 -0.26 0.27 16 LS Contribution 402.14 15.07 6.06 6.06 Total: -1.00 -29.42 402.14 -7.84 -37.26 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -7.98 Total: 13.48 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.90 Total: -1.00 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.14 Total: -47.08 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.14 Total: -24.62 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.42 -7.84 -37.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325657221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.208 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds