Wall clock time and date at job start Tue Mar 31 2020 20:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 114.00030 * 2 1 4 4 C 1.53005 * 109.47425 * 60.14486 * 3 2 1 5 5 C 1.53001 * 109.47528 * 180.14622 * 3 2 1 6 6 H 1.08994 * 109.47202 * 176.84120 * 5 3 2 7 7 C 1.52996 * 109.46890 * 56.83584 * 5 3 2 8 8 N 1.46502 * 109.46848 * 296.84275 * 5 3 2 9 9 C 1.34779 * 119.99758 * 205.00110 * 8 5 3 10 10 O 1.21339 * 120.00001 * 359.97438 * 9 8 5 11 11 C 1.49453 * 119.99714 * 179.97438 * 9 8 5 12 12 O 1.21351 * 120.00354 * 5.07820 * 11 9 8 13 13 N 1.34773 * 119.99783 * 185.08113 * 11 9 8 14 14 C 1.46503 * 120.00048 * 185.34900 * 13 11 9 15 15 C 1.52998 * 109.47093 * 184.60903 * 14 13 11 16 16 C 1.50699 * 115.55049 * 299.72277 * 15 14 13 17 17 H 1.07998 * 119.99720 * 95.43183 * 16 15 14 18 18 C 1.37876 * 119.99968 * 275.16898 * 16 15 14 19 19 N 1.31512 * 120.00410 * 355.69853 * 18 16 15 20 20 Si 1.86808 * 119.99625 * 175.70381 * 18 16 15 21 21 H 1.48496 * 109.47166 * 90.00094 * 20 18 16 22 22 H 1.48502 * 109.46679 * 209.99505 * 20 18 16 23 23 H 1.48500 * 109.47094 * 329.99180 * 20 18 16 24 24 C 1.52998 * 117.50100 * 85.40036 * 15 14 13 25 25 C 1.53010 * 117.49940 * 154.05908 * 15 14 13 26 26 C 1.53003 * 109.47161 * 300.14511 * 3 2 1 27 27 C 1.53000 * 117.50193 * 136.02758 * 26 3 2 28 28 C 1.52997 * 60.00097 * 252.51266 * 27 26 3 29 29 H 1.09002 * 109.47084 * 188.89399 * 1 2 3 30 30 H 1.08997 * 109.46861 * 308.88700 * 1 2 3 31 31 H 1.08997 * 109.46738 * 68.89225 * 1 2 3 32 32 H 1.08996 * 109.47095 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.46780 * 300.00098 * 4 3 2 34 34 H 1.09002 * 109.46972 * 59.99767 * 4 3 2 35 35 H 1.08999 * 109.47012 * 65.84499 * 7 5 3 36 36 H 1.08999 * 109.47238 * 185.83485 * 7 5 3 37 37 H 1.08999 * 109.47744 * 305.84148 * 7 5 3 38 38 H 0.96997 * 120.00233 * 24.99180 * 8 5 3 39 39 H 0.97001 * 120.00207 * 5.34253 * 13 11 9 40 40 H 1.09001 * 109.47431 * 64.59963 * 14 13 11 41 41 H 1.09011 * 109.46723 * 304.60362 * 14 13 11 42 42 H 0.96996 * 120.00086 * 185.00765 * 19 18 16 43 43 H 1.08999 * 117.49702 * 215.00132 * 24 15 14 44 44 H 1.08993 * 117.49895 * 0.02562 * 24 15 14 45 45 H 1.09005 * 117.49290 * 359.97421 * 25 15 14 46 46 H 1.08995 * 117.49839 * 144.96704 * 25 15 14 47 47 H 1.09002 * 115.54928 * 281.73568 * 26 3 2 48 48 H 1.09001 * 117.49666 * 0.02562 * 27 26 3 49 49 H 1.08995 * 117.50117 * 145.01799 * 27 26 3 50 50 H 1.09000 * 117.49645 * 252.50884 * 28 27 26 51 51 H 1.09003 * 117.50033 * 107.48914 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5617 2.0635 1.2511 5 6 3.5355 1.1847 -0.0037 6 1 3.9785 2.1789 -0.0603 7 6 3.9788 0.3591 -1.2131 8 7 3.9759 0.5231 1.2270 9 6 5.2198 0.7378 1.6994 10 8 5.9751 1.4785 1.1051 11 6 5.6689 0.0633 2.9552 12 8 4.9487 -0.7477 3.4994 13 7 6.8738 0.3559 3.4833 14 6 7.3641 -0.3882 4.6463 15 6 8.6916 0.2123 5.1132 16 6 9.8073 0.1894 4.1005 17 1 9.9935 1.0553 3.4826 18 6 10.5939 -0.9351 3.9666 19 7 10.4261 -1.9555 4.7790 20 14 11.8980 -1.0090 2.6311 21 1 13.1799 -0.4789 3.1612 22 1 12.0854 -2.4176 2.1999 23 1 11.4653 -0.1895 1.4708 24 6 8.6300 1.4049 6.0697 25 6 9.0697 0.0322 6.5849 26 6 1.5559 2.0660 -1.2474 27 6 1.1256 3.5233 -1.0687 28 6 0.0766 2.4443 -1.3444 29 1 -0.3633 -1.0153 0.1589 30 1 -0.3633 0.6451 0.7999 31 1 -0.3633 0.3701 -0.9587 32 1 2.0047 3.0593 1.2508 33 1 0.4751 2.1495 1.2536 34 1 1.8854 1.5216 2.1398 35 1 3.7432 0.9010 -2.1290 36 1 5.0535 0.1852 -1.1602 37 1 3.4555 -0.5971 -1.2119 38 1 3.3723 -0.0692 1.7020 39 1 7.4165 1.0590 3.0935 40 1 7.5139 -1.4326 4.3727 41 1 6.6332 -0.3250 5.4525 42 1 11.0261 -2.7162 4.7326 43 1 9.3964 2.1730 5.9663 44 1 7.6438 1.7615 6.3665 45 1 8.3723 -0.5138 7.2204 46 1 10.1252 -0.1033 6.8204 47 1 2.0697 1.8023 -2.1719 48 1 1.1666 3.9404 -0.0625 49 1 1.3564 4.2188 -1.8756 50 1 -0.3828 2.4299 -2.3328 51 1 -0.5730 2.1513 -0.5196 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325657221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:16 Heat of formation + Delta-G solvation = -77.261205 kcal Electronic energy + Delta-G solvation = -30431.588571 eV Core-core repulsion = 26332.587493 eV Total energy + Delta-G solvation = -4099.001077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.91517 -40.98816 -39.59439 -38.45900 -36.87313 -36.55119 -35.00524 -33.97362 -32.41722 -30.73957 -28.75209 -27.90499 -27.42890 -25.49580 -25.16028 -23.34419 -23.00446 -22.67228 -21.43374 -21.24158 -20.35703 -19.49368 -18.15291 -17.95285 -17.35629 -17.25378 -16.92421 -16.60972 -16.45755 -16.34566 -15.82039 -15.65971 -15.54079 -15.17218 -14.86065 -14.58103 -14.42594 -14.26764 -13.78412 -13.62338 -13.50743 -13.21028 -13.15506 -12.99943 -12.96018 -12.83218 -12.74881 -12.67329 -12.38550 -12.22207 -12.01226 -11.98452 -11.74876 -11.42047 -11.19228 -11.02399 -10.97887 -10.73761 -10.46084 -10.36429 -10.29370 -10.13338 -9.93416 -8.11205 -6.24859 0.38195 1.36123 1.40101 1.44047 1.52210 2.17149 2.41200 2.55560 2.74841 2.95569 3.16603 3.41921 3.58841 3.59061 3.67272 3.77909 4.03218 4.11646 4.20188 4.24142 4.30660 4.39090 4.50219 4.51018 4.61414 4.63285 4.67391 4.68458 4.75659 4.77657 4.86463 4.91880 4.92954 4.96990 5.00165 5.02452 5.15339 5.20093 5.25613 5.28173 5.31214 5.35408 5.35702 5.52231 5.68377 5.76821 6.01035 6.25368 6.35358 6.46652 6.78088 6.82829 7.00757 7.45081 8.95467 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018277 B = 0.002513 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.572148 B =11139.055778 C =11663.297726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.390 6.390 3 C 0.146 3.854 4 C -0.186 4.186 5 C 0.158 3.842 6 H 0.100 0.900 7 C -0.158 4.158 8 N -0.680 5.680 9 C 0.515 3.485 10 O -0.539 6.539 11 C 0.495 3.505 12 O -0.557 6.557 13 N -0.668 5.668 14 C 0.174 3.826 15 C -0.003 4.003 16 C -0.508 4.508 17 H 0.058 0.942 18 C 0.029 3.971 19 N -0.903 5.903 20 Si 0.944 3.056 21 H -0.274 1.274 22 H -0.289 1.289 23 H -0.270 1.270 24 C -0.180 4.180 25 C -0.146 4.146 26 C -0.190 4.190 27 C -0.175 4.175 28 C -0.170 4.170 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.418 0.582 39 H 0.415 0.585 40 H 0.039 0.961 41 H 0.056 0.944 42 H 0.260 0.740 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.115 0.885 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.108 0.892 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.945 9.289 -11.655 27.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.309 6.309 3 C 0.106 3.894 4 C -0.243 4.243 5 C 0.055 3.945 6 H 0.118 0.882 7 C -0.216 4.216 8 N -0.332 5.332 9 C 0.296 3.704 10 O -0.416 6.416 11 C 0.275 3.725 12 O -0.437 6.437 13 N -0.318 5.318 14 C 0.051 3.949 15 C -0.004 4.004 16 C -0.545 4.545 17 H 0.077 0.923 18 C -0.172 4.172 19 N -0.541 5.541 20 Si 0.770 3.230 21 H -0.200 1.200 22 H -0.215 1.215 23 H -0.194 1.194 24 C -0.218 4.218 25 C -0.184 4.184 26 C -0.209 4.209 27 C -0.212 4.212 28 C -0.206 4.206 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.255 0.745 39 H 0.252 0.748 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.133 0.867 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.126 0.874 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.757 8.851 -11.699 27.075 hybrid contribution 1.026 -0.400 -0.363 1.160 sum -21.730 8.451 -12.062 26.251 Atomic orbital electron populations 1.23251 0.80091 1.03292 1.01564 1.87947 1.21244 1.26691 1.95032 1.21019 0.90610 0.83702 0.94057 1.22561 1.03104 1.01393 0.97202 1.21165 0.92443 0.97581 0.83340 0.88243 1.22111 1.00672 1.01246 0.97559 1.45769 1.13102 1.47721 1.26657 1.19991 0.83335 0.81829 0.85290 1.90743 1.53756 1.37272 1.59839 1.20371 0.82822 0.83494 0.85788 1.90696 1.54645 1.35902 1.62416 1.45786 1.17301 1.37586 1.31078 1.20819 0.94191 0.94159 0.85735 1.19067 0.92673 0.98264 0.90371 1.20648 1.14792 0.99399 1.19689 0.92345 1.25629 0.99004 0.95214 0.97396 1.70081 1.37920 1.07717 1.38359 0.85764 0.79859 0.77007 0.80334 1.20007 1.21462 1.19428 1.23035 1.01271 0.91438 1.06012 1.22394 0.99714 0.98601 0.97731 1.22787 1.00023 0.98901 0.99195 1.23238 1.03118 0.90790 1.04065 1.23267 0.90700 1.02425 1.04251 0.89484 0.92773 0.91690 0.90308 0.89966 0.92460 0.89353 0.94025 0.91474 0.74495 0.74838 0.94286 0.92552 0.93080 0.89888 0.89150 0.90652 0.91601 0.86736 0.87790 0.87829 0.87408 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.18 113.37 1.04 1.20 16 2 O -0.39 -6.99 9.09 -148.98 -1.35 -8.34 16 3 C 0.15 2.37 0.47 -10.79 -0.01 2.36 16 4 C -0.19 -2.75 6.81 71.98 0.49 -2.25 16 5 C 0.16 3.40 1.94 44.99 0.09 3.49 16 6 H 0.10 2.25 7.58 -2.39 -0.02 2.23 16 7 C -0.16 -3.38 9.06 71.98 0.65 -2.73 16 8 N -0.68 -18.01 4.31 -443.88 -1.91 -19.92 16 9 C 0.52 17.25 7.85 87.27 0.69 17.94 16 10 O -0.54 -19.94 16.16 -3.21 -0.05 -19.99 16 11 C 0.49 19.07 7.88 87.27 0.69 19.76 16 12 O -0.56 -23.15 16.47 -3.25 -0.05 -23.20 16 13 N -0.67 -27.39 5.43 -464.39 -2.52 -29.91 16 14 C 0.17 7.88 5.54 86.38 0.48 8.36 16 15 C 0.00 -0.14 1.53 -52.93 -0.08 -0.22 16 16 C -0.51 -26.54 8.36 25.60 0.21 -26.33 16 17 H 0.06 3.03 7.82 -2.91 -0.02 3.00 16 18 C 0.03 1.54 5.43 84.65 0.46 2.00 16 19 N -0.90 -50.86 12.67 21.45 0.27 -50.59 16 20 Si 0.94 43.28 29.54 68.60 2.03 45.30 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 C -0.18 -7.28 9.95 30.62 0.30 -6.98 16 25 C -0.15 -6.61 9.18 30.62 0.28 -6.33 16 26 C -0.19 -2.37 4.91 -10.79 -0.05 -2.42 16 27 C -0.18 -1.75 9.69 30.59 0.30 -1.46 16 28 C -0.17 -1.49 7.62 30.59 0.23 -1.25 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.54 5.55 -2.39 -0.01 0.52 16 31 H 0.06 0.62 5.52 -2.39 -0.01 0.61 16 32 H 0.08 1.11 6.64 -2.39 -0.02 1.09 16 33 H 0.08 0.92 5.22 -2.39 -0.01 0.91 16 34 H 0.06 1.02 7.24 -2.39 -0.02 1.00 16 35 H 0.09 1.46 6.59 -2.39 -0.02 1.45 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.47 7.42 -2.39 -0.02 1.46 16 38 H 0.42 10.86 7.39 -92.71 -0.68 10.18 16 39 H 0.42 16.90 7.67 -92.71 -0.71 16.19 16 40 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 2.41 8.07 -2.38 -0.02 2.39 16 42 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 43 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 44 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 45 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 46 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 47 H 0.11 1.45 6.46 -2.39 -0.02 1.43 16 48 H 0.10 1.03 5.89 -2.39 -0.01 1.01 16 49 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 50 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.11 0.80 5.09 -2.39 -0.01 0.79 16 Total: -1.00 -62.76 402.14 1.75 -61.01 By element: Atomic # 1 Polarization: 40.92 SS G_CDS: -0.43 Total: 40.49 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 5.77 Total: 5.14 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -4.16 Total: -100.41 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -1.46 Total: -51.54 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -62.76 1.75 -61.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325657221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.248 kcal (2) G-P(sol) polarization free energy of solvation -62.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds